Name: Rubrobacter radiotolerans P-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14035

Type strain:

Species: Rubrobacter radiotolerans

Strain Designation: P-1

Culture col. no.: DSM 5868, ATCC 51242, DSM 46359, IAM 12072, JCM 2153, BCRC 17324, CIP 106991, IFO 14777, IMET 11468, NBRC 14777, NCIMB 12766, VKM Ac-1989

Strain history: CIP <- 2001, JCM <- IAM <- Yoshinaka: strain P-1

NCBI tax ID(s): 643560 (strain), 42256 (species)

SI-ID 46143

ATCC 51242, JCM 2153, DSM 5868, IAM12072, IFO 14777, NCIMB 12766, CIP 106991, DSM 46359, IMET 11468, VKM Ac-1989, NBRC 14777, BCRC 17324, CCRC 17324

Section

Rubrobacter radiotolerans P-1 is an aerobe, mesophilic, Gram-positive bacterium of the family Rubrobacteraceae.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Rubrobacteria*
	Order	*Rubrobacterales*
	Family	*Rubrobacteraceae*
	Genus	*Rubrobacter*
	Species	**Rubrobacter radiotolerans**
	Full Scientific Name (LPSN)	Rubrobacter radiotolerans (Yoshinaka et al. 1973) Suzuki et al. 1989

Synonym

Arthrobacter radiotolerans

Information on morphological and physiological properties Morphology

[Ref.: #43368]	Gram stain	positive

[Ref.: #122128]	Cell shape	rod-shaped

[Ref.: #122128]	Motility	no

[Ref.: #43368]	Colony color	bright pink
[Ref.: #43368]	Cultivation medium used	Thermus medium

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

[Ref.: #66793]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2342]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #2342]

Culture medium growth

[Ref.: #2342]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2342]

Culture medium composition

expand / minimize

[Ref.: #33032]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33032]

Culture medium growth

[Ref.: #33032]

Culture medium composition

expand / minimize

[Ref.: #43368]

Culture medium

Thermus medium

[Ref.: #43368]

Culture medium growth

[Ref.: #122128]

Culture medium

CIP Medium 72

[Ref.: #122128]

Culture medium growth

[Ref.: #122128]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2342]		growth	37 °C
[Ref.: #33032]		growth	37 °C
[Ref.: #43368]		optimum	45-50 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #122128]		growth	25-45 °C
[Ref.: #122128]	no	growth	10 °C
[Ref.: #122128]	no	growth	15 °C

[Ref.: #2342]	Temperature range	mesophilic
[Ref.: #33032]	Temperature range	mesophilic
[Ref.: #43368]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122128]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43368]	Oxygen tolerance	aerobe
[Ref.: #122128]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43368]		NaCl		growth	6	%
[Ref.: #122128]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43368]	4-nitrophenyl alpha-D-glucopyranoside ChEBI	-	degradation
[Ref.: #43368]	4-nitrophenyl beta-D-glucopyranoside ChEBI	-	degradation
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	arbutin ChEBI	+	degradation
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	casein	-	degradation
[Ref.: #43368]	cellobiose ChEBI	+	growth
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	cellulose ChEBI	-	degradation
[Ref.: #43368]	citrate ChEBI	-	assimilation
[Ref.: #122128]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-fructose ChEBI	+	growth
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-galactose ChEBI	-	carbon source
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-glucose ChEBI	+	growth
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-mannitol ChEBI	-	carbon source
[Ref.: #43368]	D-mannitol ChEBI	+	carbon source
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-mannose ChEBI	+	growth
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-sorbitol ChEBI	-	assimilation
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	D-trehalose ChEBI	+	growth
[Ref.: #43368]	D-xylose ChEBI	-	carbon source
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	elastin ChEBI	-	degradation
[Ref.: #43368]	erythritol ChEBI	+	growth
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	esculin ChEBI	+	degradation
[Ref.: #122128]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	fibrin ChEBI	-	degradation
[Ref.: #43368]	galactitol ChEBI	-	carbon source
[Ref.: #68371]	galactitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	gelatin ChEBI	+	degradation
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	hippurate ChEBI	+	degradation
[Ref.: #122128]	hippurate ChEBI	+	hydrolysis
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	L-arabinose ChEBI	+	growth
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	L-asparagine ChEBI	+	growth
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	L-glutamate ChEBI	+	growth
[Ref.: #43368]	L-proline ChEBI	+	growth
[Ref.: #43368]	L-rhamnose ChEBI	+	growth
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	L-serine ChEBI	-	assimilation
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	lactose ChEBI	+	growth
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	malate ChEBI	+	growth
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	melibiose ChEBI	-	carbon source
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #122128]	nitrate ChEBI	+	reduction
[Ref.: #122128]	nitrate ChEBI	+	respiration
[Ref.: #122128]	nitrite ChEBI	-	reduction
[Ref.: #43368]	olive oil	-	degradation
[Ref.: #43368]	p-nitrophenyl palmitate ChEBI	-	degradation
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43368]	pyruvate ChEBI	+	growth
[Ref.: #43368]	raffinose ChEBI	+	growth
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	ribitol ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	salicin ChEBI	+	growth
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	starch ChEBI	-	degradation
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	sucrose ChEBI	+	growth
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43368]	tween 80 ChEBI	-	degradation
[Ref.: #43368]	tyrosine ChEBI	-	degradation
[Ref.: #43368]	xylan ChEBI	-	degradation
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122128]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122128]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122128]		acetoin ChEBI	+
[Ref.: #122128]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122128]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #43368]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122128]	amylase	-
[Ref.: #43368]	beta-galactosidase	+	3.2.1.23
[Ref.: #122128]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122128]	caseinase	-	3.4.21.50
[Ref.: #43368]	catalase	+	1.11.1.6
[Ref.: #122128]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #43368]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43368]	DNase	-
[Ref.: #122128]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122128]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #122128]	gelatinase	-
[Ref.: #122128]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #122128]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122128]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122128]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122128]	oxidase	-
[Ref.: #122128]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122128]	tryptophan deaminase	-
[Ref.: #122128]	tween esterase	+
[Ref.: #122128]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122128]	10780	not determinedn.d.	+	-	-	+	+	+	-	-	-	+	+	+	+	-	+	+	+	+	+	-	-	+	-	-	-	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122128]	1949	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122128]	9975	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2342]	Sample type/isolated from	Thermo-mineral water spring
[Ref.: #2342]	Geographic location (country and/or sea, region)	Misasa, Tottori Pref.
[Ref.: #2342]	Country	Japan
[Ref.: #2342]	Country ISO 3 Code	JPN
[Ref.: #2342]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Thermo-mineral water spring at Misasa
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tottori Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #122128]	Sample type/isolated from	Environment, Thermo-mineral water spring
[Ref.: #122128]	Geographic location (country and/or sea, region)	Tottori
[Ref.: #122128]	Country	Japan
[Ref.: #122128]	Country ISO 3 Code	JPN
[Ref.: #122128]	Continent	Asia

[Ref.: #33032]	Geographic location (country and/or sea, region)	Tottori
[Ref.: #33032]	Country	Japan
[Ref.: #33032]	Country ISO 3 Code	JPN
[Ref.: #33032]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Thermal spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X87134 (>99% sequence identity) for Rubrobacter radiotolerans subclade from Microbeatlas

Aquatic Samples	53
Soil Samples	167
Animal Samples	57
Plant Samples	8
Total Samples	285

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2342]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122128]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43368]	16S rRNA gene	X87134		GenBank
[Ref.: #2342]	Rubrobacter radiotolerans 16S ribosomal RNA gene, complete sequence	U65647	1550	ENA	42256 tax ID
[Ref.: #20218]	Rubrobacter radiotolerans partial 16S rRNA gene, type strain DSM 5868	X98372	1480	ENA	643560 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rubrobacter radiotolerans DSM 5868	GCA_900175965	contig	GenBank	643560 tax ID
[Ref.: #66792]	Rubrobacter radiotolerans DSM 5868 strain DSM 5868	643560.4	wgs	PATRIC	643560 tax ID	*
[Ref.: #66792]	Rubrobacter radiotolerans DSM 5868	2505679031	complete	JGI IMG/M	643560 tax ID	*

[Ref.: #67770]	GC-content	66.5 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	67.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #2342]

Culture collection no.

DSM 5868, ATCC 51242, DSM 46359, IAM 12072, JCM 2153, BCRC 17324, CIP 106991, IFO 14777, IMET 11468, NBRC 14777, NCIMB 12766, VKM Ac-1989

[Ref.: #83202]

SI-ID 46143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rubrobacter indicoceani sp. nov., a new marine actinobacterium isolated from Indian Ocean sediment.	Chen RW, Wang KX, Wang FZ, He YQ, Long LJ, Tian XP	Int J Syst Evol Microbiol	10.1099/ijsem.0.003018	2018	*

References

#2342

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5868

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33032 ; Curators of the CIP;

#43368

Laura Carreto, Edward Moore, M. Fernanda Nobre, Robin Wait, Paul W. Riley, Richard J, Sharp, Milton S. da Costa: Rubrobacter xylanophilus sp. nov., a New Thermophilic Species Isolated from a Thermally Polluted Effluent. IJSEM 1996: 460 - 465 46 ( DOI 10.1099/00207713-46-2-460 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83202

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46143.1 )

#122128 Collection of Institut Pasteur ; Curators of the CIP; CIP 106991
* These data were automatically processed and therefore are not curated

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