Name: Traorella massiliensis DSM 103514
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140324

Type strain:

Species: Traorella massiliensis

Culture col. no.: DSM 103514, CSUR P3110, Marseille-P3110

Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P3110 <- Federation de bacteriologie et virologie hygiene hospitaliere, Hopital de la Timone, Marseille {2016}

NCBI tax ID(s): 1903263 (species)

Section

Traorella massiliensis DSM 103514 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from colon liquid sample from 76-year-old woman.

Gram-positive
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Erysipelotrichia*
	Order	*Erysipelotrichales*
	Family	*Erysipelotrichaceae*
	Genus	"Traorella"
	Species	"Traorella massiliensis"
	Full Scientific Name (LPSN)	Traorella massiliensis Bonnet et al. 2019

Synonym

"Traorella massiliensis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42931]

Culture medium

CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)

[Ref.: #42931]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #42931]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42931]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.434

[Ref.: #69481]	Ability of spore formation	yes Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.973

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42931]	Sample type/isolated from	colon liquid sample from 76-year-old woman
[Ref.: #42931]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #42931]	Country	France
[Ref.: #42931]	Country ISO 3 Code	FRA
[Ref.: #42931]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	-
#Host Body-Site	#Gastrointestinal tract	#Large intestine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT615365 (>99% sequence identity) for Traorella massiliensis subclade from Microbeatlas

Aquatic Samples	231
Soil Samples	125
Animal Samples	14763
Plant Samples	51
Total Samples	15170

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42931]	Traorella massiliensis partial 16S rRNA gene, type strain Marseille-P3110T	LT615365	1499	ENA	1903263 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Traorella massiliensis Marseille-P3110T	GCA_900104665	scaffold	GenBank	1903263 tax ID	*
[Ref.: #66792]	Traorella massiliensis Marseille-P3110	2788499998	draft	JGI IMG/M	1903263 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Traorella massiliensis Marseille-P3110 NCBI: GCA_900104665.1
[Ref.: #69481]	spore-forming	yes	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Traorella massiliensis Marseille-P3110 NCBI: GCA_900104665.1
[Ref.: #69480]	motile	no	94.044	no
[Ref.: #69480]	glucose-ferment	yes	70.812	no
[Ref.: #69480]	flagellated	no	97.898	no
[Ref.: #69480]	gram-positive	yes	95.596	no
[Ref.: #69480]	anaerobic	yes	98.383	no
[Ref.: #69480]	aerobic	no	98.694	no
[Ref.: #69480]	halophile	no	71.58	no
[Ref.: #69480]	spore-forming	no	80.731	no
[Ref.: #69480]	thermophile	no	95.277	yes
[Ref.: #69480]	glucose-util	yes	91.261	no

Availability in culture collections External links

[Ref.: #42931]

Culture collection no.

DSM 103514, CSUR P3110, Marseille-P3110

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome sequence and description of Traorella massiliensis gen. nov., sp. nov., a new bacterial genus isolated from human left colon.	Bonnet M, Mailhe M, Ricaboni D, Labas N, Richez M, Vitton V, Benezech A, Fournier PE, Million M, Raoult D, Khelaifia S	New Microbes New Infect	10.1016/j.nmni.2019.100520	2019	*
Phylogeny	'Traorella massiliensis' gen. nov., sp. nov., a new bacterial species isolated from the left colon of a 76-year-old woman.	Mailhe M, Ricaboni D, Vitton V, Lagier JC, Fournier PE, Raoult D	New Microbes New Infect	10.1016/j.nmni.2016.12.009	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42931

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103514

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Traorella massiliensis Marseille-P3110

Traorella massiliensis Marseille-P3110

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