Name: Paenibacillus konkukensis SK-3146
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140318

Type strain:

Species: Paenibacillus konkukensis

Strain Designation: SK-3146

Culture col. no.: DSM 104139, KACC 18876, LMG 29568

Strain history: <- W. Im, Hankyoung National University, Anseong-city, Republic of Korea; SK-3146 <- S.-K. Kim

NCBI tax ID(s): 2020716 (species)

SI-ID 407808

DSM 104139

Section

Paenibacillus konkukensis SK-3146 is an aerobe, spore-forming, thermophilic bacterium that forms circular colonies and was isolated from animal feed.

colony-forming
Gram-positive
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus konkukensis**
	Full Scientific Name (LPSN)	Paenibacillus konkukensis Im et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43311]	Gram stain	positive

[Ref.: #43311]	Cell length	1.5-2.5 µm

[Ref.: #43311]	Cell width	0.5-1 µm

[Ref.: #43311]	Cell shape	rod-shaped

[Ref.: #43311]	Motility	no

[Ref.: #43311]	Colony size	1.2-2.5 mm
[Ref.: #43311]	Colony color	milky
[Ref.: #43311]	Colony shape	circular
[Ref.: #43311]	Incubation period	2 days
[Ref.: #43311]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43311]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43311]

Culture medium growth

[Ref.: #42925]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #42925]

Culture medium growth

[Ref.: #42925]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42925]

Culture medium composition

expand / minimize

[Ref.: #43311]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43311]

Culture medium growth

[Ref.: #43311]

Culture medium

Dnase agar

[Ref.: #43311]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #42925]		growth	30 °C
[Ref.: #43311]	no	growth	50 °C
[Ref.: #43311]	no	growth	15 °C
[Ref.: #43311]		growth	18-45 °C
[Ref.: #43311]		optimum	30 °C

[Ref.: #42925]	Temperature range	mesophilic
[Ref.: #43311]	Temperature range	thermophilic
[Ref.: #43311]	Temperature range	psychrophilic
[Ref.: #43311]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43311]			optimum	7-8
[Ref.: #43311]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43311]

Oxygen tolerance

aerobe

[Ref.: #43311]	Spore description	ellipsoidal terminal endospores are formed in swollen sporangia
[Ref.: #43311]	Type of spore	endospore
[Ref.: #43311]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43311]		NaCl		growth	1-3	%
[Ref.: #43311]		NaCl	no	growth	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43311]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43311]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43311]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #43311]	acetate ChEBI	-	assimilation
[Ref.: #43311]	adipate ChEBI	-	assimilation
[Ref.: #43311]	arginine ChEBI	+	assimilation
[Ref.: #43311]	D-glucose ChEBI	-	assimilation
[Ref.: #43311]	D-mannitol ChEBI	+	carbon source
[Ref.: #43311]	D-mannitol ChEBI	+	energy source
[Ref.: #43311]	D-mannose ChEBI	-	assimilation
[Ref.: #43311]	D-ribose ChEBI	+	carbon source
[Ref.: #43311]	D-ribose ChEBI	+	energy source
[Ref.: #43311]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43311]	decanoate ChEBI	-	assimilation
[Ref.: #43311]	esculin ChEBI	+	hydrolysis
[Ref.: #43311]	gluconate ChEBI	+	carbon source
[Ref.: #43311]	gluconate ChEBI	+	energy source
[Ref.: #43311]	glycogen ChEBI	-	assimilation
[Ref.: #43311]	itaconate ChEBI	-	assimilation
[Ref.: #43311]	L-alanine ChEBI	-	assimilation
[Ref.: #43311]	L-arabinose ChEBI	+	carbon source
[Ref.: #43311]	L-arabinose ChEBI	+	energy source
[Ref.: #43311]	L-fucose ChEBI	-	assimilation
[Ref.: #43311]	L-proline ChEBI	-	assimilation
[Ref.: #43311]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43311]	L-serine ChEBI	-	assimilation
[Ref.: #43311]	lactate ChEBI	-	assimilation
[Ref.: #43311]	maltose ChEBI	+	carbon source
[Ref.: #43311]	maltose ChEBI	+	energy source
[Ref.: #43311]	melibiose ChEBI	+	carbon source
[Ref.: #43311]	melibiose ChEBI	+	energy source
[Ref.: #43311]	myo-inositol ChEBI	+	carbon source
[Ref.: #43311]	myo-inositol ChEBI	+	energy source
[Ref.: #43311]	nitrate ChEBI	+	reduction
[Ref.: #43311]	propionate ChEBI	-	assimilation
[Ref.: #43311]	salicin ChEBI	+	carbon source
[Ref.: #43311]	salicin ChEBI	+	energy source
[Ref.: #43311]	sodium acetate ChEBI	-	assimilation
[Ref.: #43311]	sodium malonate ChEBI	-	assimilation
[Ref.: #43311]	suberic acid ChEBI	-	assimilation
[Ref.: #43311]	sucrose ChEBI	+	carbon source
[Ref.: #43311]	sucrose ChEBI	+	energy source
[Ref.: #43311]	urea ChEBI	+	assimilation
[Ref.: #43311]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43311]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43311]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #43311]	acid phosphatase	+	3.1.3.2
[Ref.: #43311]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43311]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43311]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43311]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43311]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43311]	beta-glucosidase	+	3.2.1.21
[Ref.: #43311]	esterase (C 4)	+
[Ref.: #43311]	esterase Lipase (C 8)	+
[Ref.: #43311]	leucine arylamidase	+	3.4.11.1
[Ref.: #43311]	trypsin	+	3.4.21.4
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42925]	Sample type/isolated from	animal feed
[Ref.: #42925]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #42925]	Country	Republic of Korea
[Ref.: #42925]	Country ISO 3 Code	KOR
[Ref.: #42925]	Continent	Asia

[Ref.: #43311]	Sample type/isolated from	animal feed
[Ref.: #43311]	Country	Republic of Korea
[Ref.: #43311]	Country ISO 3 Code	KOR
[Ref.: #43311]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Animal feed

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX462877 (>99% sequence identity) for Paenibacillus konkukensis from Microbeatlas

Aquatic Samples	1
Soil Samples	11
Animal Samples
Plant Samples	3
Total Samples	15

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42925]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42925]	Paenibacillus konkukensis strain SK-3146 16S ribosomal RNA gene, partial sequence	KX462877	1465	ENA	2020716 tax ID

[Ref.: #42925]

GC-content

53.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #42925]

Culture collection no.

DSM 104139, KACC 18876, LMG 29568

[Ref.: #96622]

SI-ID 407808

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus konkukensis sp. nov., isolated from animal feed.	Im WT, Yi KJ, Lee SS, Moon HI, Jeon CO, Kim DW, Kim SK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001955	2017	*
	Potential Probiotic Acceptability of a Novel Strain of Paenibacillus konkukensis SK 3146 and Its Dietary Effects on Growth Performance, Intestinal Microbiota, and Meat Quality in Broilers.	Moon SG, Kothari D, Lee WD, Kim JI, Kim KI, Kim YG, Ga GW, Kim EJ, Kim SK	Animals (Basel)	10.3390/ani12111471	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42925

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104139

#43311

Wan-Taek Im, Kwon-Jung Yi, Sang-Suk Lee, Hyung In Moon, Che Ok Jeon, Dong-Woon Kim, Soo-Ki Kim: Paenibacillus konkukensis sp. nov., isolated from animal feed. IJSEM 67: 2343 - 2348 2017 ( DOI 10.1099/ijsem.0.001955 , PubMed 28699880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96622

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407808.1 )

* These data were automatically processed and therefore are not curated

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