Name: Rodentibacter mrazii Ppn418
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140305

Type strain:

Species: Rodentibacter mrazii

Strain Designation: Ppn418

Culture col. no.: DSM 103979, CCUG 69669

Strain history: <- H. Christensen, University of Copenhagen, Veterinary Disease Biology, Denmark <- R. Boot, Laboratory for Infectious Disease and Screening, Bilthoven, Netherlands

NCBI tax ID(s): 1908257 (species)

Section

Rodentibacter mrazii Ppn418 is a microaerophile, mesophilic, Gram-negative animal pathogen that forms circular colonies and was isolated from nasopharynx of wood mouse Apodemus sylvaticus.

colony-forming
Gram-negative
animal pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Rodentibacter*
	Species	**Rodentibacter mrazii**
	Full Scientific Name (PNU)	Rodentibacter mrazii Adhikary et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43243]	Gram stain	negative
[Ref.: #43243]	Motility	no

[Ref.: #43243]	Type of hemolysis	gamma
[Ref.: #43243]	Colony size	1-2 mm
[Ref.: #43243]	Colony shape	circular
[Ref.: #43243]	Incubation period	1 day
[Ref.: #43243]	Cultivation medium used	Bovine blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42912]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #42912]

Culture medium growth

[Ref.: #42912]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #42912]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42912]			growth	37 °C
[Ref.: #63644]			growth	37 °C

[Ref.: #42912]	Temperature range	mesophilic
[Ref.: #63644]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63644]

Oxygen tolerance

microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43243]	(+)-D-arabitol ChEBI	-	builds acid from
[Ref.: #43243]	(+)-D-fucose ChEBI	-	builds acid from
[Ref.: #43243]	(+)-D-glucose ChEBI	+	builds acid from
[Ref.: #43243]	(+)-D-glucose ChEBI	-	builds gas from
[Ref.: #43243]	(+)-D-glycogen	-	builds acid from
[Ref.: #43243]	(-)-D-fructose ChEBI	+	builds acid from
[Ref.: #43243]	(-)-D-fructose ChEBI	-	builds gas from
[Ref.: #43243]	(-)-D-ribose ChEBI	+	builds acid from
[Ref.: #43243]	(-)-L-sorbose ChEBI	-	builds acid from
[Ref.: #43243]	(-)-L-xylose ChEBI	-	builds acid from
[Ref.: #43243]	amygdalin ChEBI	-	builds acid from
[Ref.: #43243]	arbutin ChEBI	-	builds acid from
[Ref.: #43243]	cellobiose ChEBI	-	builds acid from
[Ref.: #43243]	D-galactose ChEBI	+	builds acid from
[Ref.: #43243]	D-galactose ChEBI	-	builds gas from
[Ref.: #43243]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43243]	D-mannose ChEBI	+	builds acid from
[Ref.: #43243]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #43243]	D-xylose ChEBI	+	builds acid from
[Ref.: #43243]	erythritol ChEBI	-	builds acid from
[Ref.: #43243]	esculin ChEBI	-	builds acid from
[Ref.: #43243]	galactarate ChEBI	+	builds acid from
[Ref.: #43243]	galactitol ChEBI	-	builds acid from
[Ref.: #43243]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43243]	glucose ChEBI	-	fermentation
[Ref.: #43243]	inulin ChEBI	-	builds acid from
[Ref.: #43243]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43243]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43243]	lactose ChEBI	+	builds acid from
[Ref.: #43243]	malonate ChEBI	+	builds base from
[Ref.: #43243]	maltose ChEBI	+	builds acid from
[Ref.: #43243]	maltose ChEBI	-	builds gas from
[Ref.: #43243]	melezitose ChEBI	-	builds acid from
[Ref.: #43243]	melibiose ChEBI	+	builds acid from
[Ref.: #43243]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43243]	nad ChEBI	-	required for growth
[Ref.: #43243]	raffinose ChEBI	+	builds acid from
[Ref.: #43243]	ribitol ChEBI	-	builds acid from
[Ref.: #43243]	salicin ChEBI	-	builds acid from
[Ref.: #43243]	sucrose ChEBI	+	builds acid from
[Ref.: #43243]	tetrathionate ChEBI	-	reduction
[Ref.: #43243]	trehalose ChEBI	+	builds acid from
[Ref.: #43243]	turanose ChEBI	-	builds acid from
[Ref.: #43243]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43243]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #43243]		acetoin ChEBI

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43243]		acetoin ChEBI	-
[Ref.: #43243]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43243]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43243]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43243]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43243]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43243]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43243]	beta-galactosidase	+	3.2.1.23
[Ref.: #43243]	beta-glucosidase	-	3.2.1.21
[Ref.: #43243]	beta-glucuronidase	+/-	3.2.1.31
[Ref.: #43243]	beta-xylosidase	-
[Ref.: #43243]	catalase	+	1.11.1.6
[Ref.: #43243]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43243]	gelatinase	-
[Ref.: #43243]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43243]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #43243]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #43243]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42912]	Sample type/isolated from	nasopharynx of wood mouse Apodemus sylvaticus
[Ref.: #42912]	Host species	Apodemus sylvaticus
[Ref.: #42912]	Country	Netherlands
[Ref.: #42912]	Country ISO 3 Code	NLD
[Ref.: #42912]	Continent	Europe

[Ref.: #43243]	Sample type/isolated from	sample from Apodemus silvaticus

[Ref.: #63644]	Sample type/isolated from	Apodemus sylvaticus,nasopharynx,rodent
[Ref.: #63644]	Country	Netherlands
[Ref.: #63644]	Country ISO 3 Code	NLD
[Ref.: #63644]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX858294 (>99% sequence identity) for Rodentibacter mrazii from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples	107
Plant Samples
Total Samples	109

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42912]	Pathogenicity (animal)	yes, in single cases
[Ref.: #42912]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42912]	Rodentibacter mrazii strain Ppn418 16S ribosomal RNA gene, partial sequence	KX858294	1357	ENA	1908257 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rodentibacter mrazii Ppn418	GCA_001998825	contig	GenBank	1908257 tax ID	*
[Ref.: #66792]	Rodentibacter mrazii ppn418	2791354949	draft	JGI IMG/M	1908257 tax ID	*

[Ref.: #43243]	GC-content	40 mol%
[Ref.: #42912]	GC-content	40.0 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #42912]

Culture collection no.

DSM 103979, CCUG 69669

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies.	Adhikary S, Nicklas W, Bisgaard M, Boot R, Kuhnert P, Waberschek T, Aalbaek B, Korczak B, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001866	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42912

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103979

#43243

Sadhana Adhikary, Werner Nicklas, Magne Bisgaard, Ron Boot, Peter Kuhnert, Torsten Waberschek, Bent Aalbaek, Bozena Korczak and Henrik Christensen: Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies. IJSEM 67: 1793 - 1806 2017 ( DOI 10.1099/ijsem.0.001866 , PubMed 28629498 )

#63644 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 69669

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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