Alistipes finegoldii DSM 17242 is an anaerobe, rod-shaped bacterium that was isolated from human, appendix tissue, 14-year-old boy.
rod-shaped anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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Last LPSN update
2026-05-29 08:28:11 |
| Domain Bacteria |
| Phylum Bacteroidota |
| Class Bacteroidia |
| Order Bacteroidales |
| Family Rikenellaceae |
| Genus Alistipes |
| Species Alistipes finegoldii |
| Full scientific name Alistipes finegoldii Rautio et al. 2003 |
| BacDive ID | Other strains from Alistipes finegoldii (3) | Type strain |
|---|---|---|
| 152192 | A. finegoldii CCUG 46022 | |
| 156871 | A. finegoldii CCUG 66207 | |
| 156948 | A. finegoldii CCUG 67279 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6849 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive  | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 6849 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water | ||
| 41769 | MEDIUM 6 - Columbia agar with 10 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |||
| 119353 | CIP Medium 6 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 119353 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68380 | 17632 ChEBI | nitrate | - | reduction | from API rID32A |
| 119353 | 17632 ChEBI | nitrate | - | reduction | |
| 119353 | 17632 ChEBI | nitrate | + | respiration | |
| 119353 | 16301 ChEBI | nitrite | - | reduction | |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68380 | 16199 ChEBI | urea | - | hydrolysis | from API rID32A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68380 | alanine arylamidase | + | 3.4.11.2 | from API rID32A |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68380 | alkaline phosphatase | + | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68380 | alpha-fucosidase | + | 3.2.1.51 | from API rID32A |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68380 | alpha-galactosidase | + | 3.2.1.22 | from API rID32A |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68380 | alpha-glucosidase | + | 3.2.1.20 | from API rID32A |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 119353 | amylase | - | ||
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 119353 | beta-galactosidase | - | 3.2.1.23 | |
| 68380 | beta-galactosidase | + | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 119353 | caseinase | - | 3.4.21.50 | |
| 119353 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 119353 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 119353 | gelatinase | +/- | ||
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 119353 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | + | 3.4.11.1 | from API rID32A |
| 119353 | lipase | - | ||
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API rID32A |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 119353 | oxidase | - | ||
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 119353 | protease | - | ||
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 119353 | tween esterase | + | ||
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 119353 | urease | - | 3.5.1.5 | |
| 68380 | urease | - | 3.5.1.5 | from API rID32A |
| 68382 | valine arylamidase | - | from API zym |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6849 | - | - | + | + | - | + | +/- | - | - | + | - | - | + | + | - | - | + | - | - | + | - | - | - | - | + | - | - | + | - | |
| 6849 | - | - | + | + | - | + | +/- | - | - | + | - | - | - | + | - | + | + | - | - | + | - | - | - | - | + | - | - | +/- | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM26536v1 assembly for Alistipes finegoldii DSM 17242 | complete | GCA_000265365   | 679935.3  | 2509601035  | 679935 | 99.2 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Enzymology | Identification of 3-ketocapnine reductase activity within the human microbiota. | Wu X, Hou L, Zhang H, Ma Y, Wang J, Cai M, Tang X. | mLife | 10.1002/mlf2.12134 | 2024 | |
| Genetics | Unraveling the Gut Microbiome-Diet Connection: Exploring the Impact of Digital Precision and Personalized Nutrition on Microbiota Composition and Host Physiology. | Bianchetti G, De Maio F, Abeltino A, Serantoni C, Riente A, Santarelli G, Sanguinetti M, Delogu G, Martinoli R, Barbaresi S, Spirito M, Maulucci G. | Nutrients | 10.3390/nu15183931 | 2023 | |
| Pathogenicity | Altered gut microbiota of obesity subjects promotes colorectal carcinogenesis in mice. | Kang X, Ng SK, Liu C, Lin Y, Zhou Y, Kwong TNY, Ni Y, Lam TYT, Wu WKK, Wei H, Sung JJY, Yu J, Wong SH. | EBioMedicine | 10.1016/j.ebiom.2023.104670 | 2023 | |
| Association between seizure reduction during ketogenic diet treatment of epilepsy and changes in circulatory metabolites and gut microbiota composition. | Dahlin M, Wheelock CE, Prast-Nielsen S. | EBioMedicine | 10.1016/j.ebiom.2024.105400 | 2024 | | |
| Metabolism | Fatty acid activation and utilization by Alistipes finegoldii, a representative Bacteroidetes resident of the human gut microbiome. | Radka CD, Frank MW, Rock CO, Yao J. | Mol Microbiol | 10.1111/mmi.14445 | 2020 | |
| Lactobacillus acidophilus potentiates oncolytic virotherapy through modulating gut microbiota homeostasis in hepatocellular carcinoma. | Zhang J, Yang J, Luo J, Wu W, Luo H, Wei W, Lyu H, Wang Y, Yi H, Zhang Y, Fan Z, Lyu H, Kanakaveti VP, Qin B, Yuan P, Yang R, Zhang H, Zuo T, Felsher DW, Lee MH, Li K. | Nat Commun | 10.1038/s41467-025-58407-z | 2025 | | |
| Metabolism | Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets. | Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P. | Sci Rep | 10.1038/s41598-017-10369-z | 2017 | |
| Assessment of Gram- and Viability-Staining Methods for Quantifying Bacterial Community Dynamics Using Flow Cytometry. | Duquenoy A, Bellais S, Gasc C, Schwintner C, Dore J, Thomas V. | Front Microbiol | 10.3389/fmicb.2020.01469 | 2020 | | |
| Gut Microbiota in Human Systemic Lupus Erythematosus and a Mouse Model of Lupus. | Luo XM, Edwards MR, Mu Q, Yu Y, Vieson MD, Reilly CM, Ahmed SA, Bankole AA. | Appl Environ Microbiol | 10.1128/aem.02288-17 | 2018 | | |
| Pathogenicity | Metronidazole- and carbapenem-resistant bacteroides thetaiotaomicron isolated in Rochester, Minnesota, in 2014. | Sadarangani SP, Cunningham SA, Jeraldo PR, Wilson JW, Khare R, Patel R. | Antimicrob Agents Chemother | 10.1128/aac.00677-15 | 2015 | |
| Atlas of mRNA translation and decay for bacteria. | Huch S, Nersisyan L, Ropat M, Barrett D, Wu M, Wang J, Valeriano VD, Vardazaryan N, Huerta-Cepas J, Wei W, Du J, Steinmetz LM, Engstrand L, Pelechano V. | Nat Microbiol | 10.1038/s41564-023-01393-z | 2023 | | |
| Genetics | The Primary Research on the Gut Microbes in KKAy Mice. | Li Y, Han L, Xu M, Guo J, Feng M, Wang X. | Indian J Microbiol | 10.1007/s12088-013-0410-3 | 2014 | |
| Genetics | Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses. | Chung YW, Gwak HJ, Moon S, Rho M, Ryu JH. | PLoS One | 10.1371/journal.pone.0227886 | 2020 | |
| Metagenomic analysis of the medicinal leech gut microbiota. | Maltz MA, Bomar L, Lapierre P, Morrison HG, McClure EA, Sogin ML, Graf J. | Front Microbiol | 10.3389/fmicb.2014.00151 | 2014 | | |
| Developing standards for the microbiome field. | Amos GCA, Logan A, Anwar S, Fritzsche M, Mate R, Bleazard T, Rijpkema S. | Microbiome | 10.1186/s40168-020-00856-3 | 2020 | | |
| Metabolism | Slimy partners: the mucus barrier and gut microbiome in ulcerative colitis. | Fang J, Wang H, Zhou Y, Zhang H, Zhou H, Zhang X. | Exp Mol Med | 10.1038/s12276-021-00617-8 | 2021 | |
| Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family beta-carotene 15,15'-monooxygenase. | Culligan EP, Sleator RD, Marchesi JR, Hill C. | PLoS One | 10.1371/journal.pone.0103318 | 2014 | | |
| Design, construction, and in vivo augmentation of a complex gut microbiome. | Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA. | Cell | 10.1016/j.cell.2022.08.003 | 2022 | | |
| Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements. | Coyne MJ, Roelofs KG, Comstock LE. | BMC Genomics | 10.1186/s12864-016-2377-z | 2016 | | |
| The Genus Alistipes: Gut Bacteria With Emerging Implications to Inflammation, Cancer, and Mental Health. | Parker BJ, Wearsch PA, Veloo ACM, Rodriguez-Palacios A. | Front Immunol | 10.3389/fimmu.2020.00906 | 2020 | | |
| Investigating the pathogenesis of urolithiasis through gut microbiome, plasma metabolome and inflammatory proteome: a mediation Mendelian randomization study. | Wu G, Zhu W, Li G, Xu Y, Liu Y, Tao L, Hao Z. | Clin Epigenetics | 10.1186/s13148-025-02014-8 | 2025 | | |
| Studies on Two Convergently Evolved Cysteate Synthases in Sulfonolipid Biosynthesis. | Yang S, Wang K, Hu Y, Zhang L, Zhang C, Liu Y, Li Z, Jiang L, Han Y, Naowarojna N, Wei Y, Zhang Y. | ACS Chem Biol | 10.1021/acschembio.5c00142 | 2025 | | |
| Alistipes finegoldii augments the efficacy of immunotherapy against solid tumors. | Wu ZY, Wu QW, Han Y, Xiang SJ, Wang YN, Wu WW, Chen YX, Feng ZQ, Wang YY, Xu ZG, He HC, He JJ, Chen JQ, Sheng H, Zhang QH, Wang ZX, Liao K, Zhao Q, Mei WJ, Ding PR, Qiu MZ, Wang F, Ju HQ, Luo HY, Zhao X, Xu RH. | Cancer Cell | 10.1016/j.ccell.2025.07.002 | 2025 | | |
| Phylogeny | Polyphenol-mediated microbiome modulation in STEMI patients: a pilot study. | Issilbayeva A, Sergazy S, Zhashkeyev A, Gulyayev A, Kozhakhmetov S, Shulgau Z, Nurgaziyev M, Nurgaziyeva A, Zhetkenev S, Mukhanbetzhanov N, Jarmukhanov Z, Mukhanbetzhanova Z, Vinogradova E, Zhumadilov Z, Kushugulova A, Aljofan M. | Front Med (Lausanne) | 10.3389/fmed.2025.1522373 | 2025 | |
| The ecology of the microbiota in children with obesity is associated with the intake of carbohydrates and insulin resistance. | Prodam F, Ricotti R, Caramaschi A, Mancioppi V, Antoniotti V, Caputo M, Archero F, Filigheddu N, Tini S, Celano S, Manfredi M, Massa N, Bellone S, Bona E. | Clin Nutr | 10.1016/j.clnu.2025.08.018 | 2025 | | |
| Genetics | Links between gut microbiota with specific serum metabolite groups in pregnant women with overweight or obesity. | Lotankar M, Houttu N, Benchraka C, Lahti L, Laitinen K. | Nutr Metab Cardiovasc Dis | 10.1016/j.numecd.2025.104095 | 2025 | |
| Genetics | Bile-processed Rhizoma Coptidis alleviates type 2 diabetes mellitus through modulating the gut microbiota and short-chain fatty acid metabolism. | Zhu Y, Tian Q, Huang Q, Wang J. | Int Immunopharmacol | 10.1016/j.intimp.2025.114645 | 2025 | |
| Mendelian randomization analysis revealed a gut microbiota-eye axis in acute anterior uveitis. | Mi Y, Chen L, Liao N, Wan M. | Eye (Lond) | 10.1038/s41433-025-03715-3 | 2025 | | |
| The Composition of the Fecal and Mucosa-adherent Microbiota Varies Based on Age and Disease Activity in Ulcerative Colitis. | Malham M, Vestergaard MV, Bataillon T, Villesen P, Dempfle A, Bang C, Engsbro AL, Jakobsen C, Franke A, Wewer V, Thingholm LB, Petersen AM. | Inflamm Bowel Dis | 10.1093/ibd/izae179 | 2025 | | |
| Bacterial diversity and specific taxa are associated with decolonization of carbapenemase-producing enterobacterales after fecal microbiota transplantation. | Davido B, Watson AR, de Truchis P, Galazzo G, Dinh A, Batista R, Terveer EM, Lawrence C, Michelon H, Jobard M, Saleh-Mghir A, Kuijper EJ, Caballero S. | J Infect | 10.1016/j.jinf.2024.106216 | 2024 | | |
| Distinguishing tuberculosis from non-tuberculous mycobacteria and other respiratory conditions by microbiome patterns. | Oh JY, Ko YK, Jeon MH, Doo HM, Roh S, Gim JA. | Sci Rep | 10.1038/s41598-025-90776-9 | 2025 | | |
| Genetics | nf-UnO pipeline: A metagenomic co-assembly pipeline for novel pathogen detection from mNGS outbreak sets. | Guzman-Cole C, Huang AD. | Bioinformatics | 10.1093/bioinformatics/btaf436 | 2025 | |
| Phenotype | Characteristics of gut microbiota in high-methylated colorectal cancer. | Saito T, Karasawa H, Ouchi K, Ono T, Kajiwara T, Kohyama A, Ikeda-Ohtsubo W, Fukuda S, Fujishima F, Ozawa Y, Suzuki H, Watanabe K, Ishioka C, Kamei T, Ohnuma S, Abe T, Unno M. | Int J Clin Oncol | 10.1007/s10147-025-02812-3 | 2025 | |
| Intestinal Microbiota Composition in Patients with Type 2 Diabetes and Effects of Oral Antidiabetics. | Kalkan AT, Yorulmaz G, Akalin A, Dinleyici EC. | J Clin Med | 10.3390/jcm14082786 | 2025 | | |
| Genetics | Links between gut microbiome, metabolome, clinical variables and non-alcoholic fatty liver disease severity in bariatric patients. | Schwenger KJP, Sharma D, Ghorbani Y, Xu W, Lou W, Comelli EM, Fischer SE, Jackson TD, Okrainec A, Allard JP. | Liver Int | 10.1111/liv.15864 | 2024 | |
| Alistipes Bacteremia in Older Patients with Digestive and Cancer Comorbidities, Japan, 2016-2023. | Watanabe N, Watari T, Hosokawa N, Otsuka Y. | Emerg Infect Dis | 10.3201/eid3104.241284 | 2025 | | |
| Characteristics of gut flora in children who go to bed early versus late. | Mao C, Xi C, Du R, Chen W, Song N, Qian Y, Tian X. | Sci Rep | 10.1038/s41598-024-75006-y | 2024 | | |
| Genetics | Comparative Analysis of Microbiological Profiles and Antibiotic Resistance Genes in Subjects with Colorectal Cancer and Healthy Individuals. | Li J, Zhu Y, Chang Q, Gong Y, Wan J, Xu S. | Pol J Microbiol | 10.33073/pjm-2025-006 | 2025 | |
| Phylogeny | Exploring the Intestinal Microbiota Profile in Prostate Cancer Patients and Healthy Controls. | Cocomazzi G, Villani A, Mencarelli G, Contu V, De Ruvo D, Virgili E, Marino F, Baldini GM, Binda E, Parmegiani L, Ciampaglia W, Capone L, Perri F, Cisternino A, Pazienza V, Panebianco C. | Microorganisms | 10.3390/microorganisms13092105 | 2025 | |
| mbSparse: an autoencoder-based imputation method to address sparsity in microbiome data. | Qi C, Cai Y, He G, Qian K, Guo M, Cheng L. | Gut Microbes | 10.1080/19490976.2025.2552347 | 2025 | | |
| Fecal gut microbiota and amino acids as noninvasive diagnostic biomarkers of Pediatric inflammatory bowel disease. | Vermeer E, Jagt JZ, Lap EM, Struys EA, Budding AE, Verhoeven-Duif NM, Bosma M, van Limbergen JE, Koot BGP, de Jonge R, Benninga MA, Acharjee A, de Boer NKH, de Meij TGJ. | Gut Microbes | 10.1080/19490976.2025.2517828 | 2025 | | |
| Severe Cognitive Decline in Long-term Care Is Related to Gut Microbiome Production of Metabolites Involved in Neurotransmission, Immunomodulation, and Autophagy. | Shoubridge AP, Carpenter L, Flynn E, Papanicolas LE, Collins J, Gordon D, Lynn DJ, Whitehead C, Leong LEX, Cations M, De Souza DP, Narayana VK, Choo JM, Wesselingh SL, Crotty M, Inacio MC, Ivey K, Taylor SL, Rogers GB. | J Gerontol A Biol Sci Med Sci | 10.1093/gerona/glaf053 | 2025 | | |
| Mediation effect and metabolic pathways of gut microbiota in the associations between lifestyles and dyslipidemia. | Zeng L, Yu B, Zeng P, Duoji Z, Zuo H, Lian J, Yang T, Dai Y, Feng Y, Yu P, Yang J, Yang S, Dou Q. | NPJ Biofilms Microbiomes | 10.1038/s41522-025-00721-x | 2025 | | |
| Phylogeny | Gut microbiota dysbiosis and short-chain fatty acid depletion in phlegm-dampness polycystic ovary syndrome: a cross-sectional 16S rRNA sequencing analysis. | Xia XY, Chen Y, Zhang XJ, Wang J, Xu HY, Zhao R. | BMC Endocr Disord | 10.1186/s12902-025-02076-y | 2025 | |
| Pathogenicity | Differences of the 6N and 6J Substrains of C57BL/6 Mice in the Development of Experimental Autoimmune Encephalomyelitis | Alvarez-Lopez A, Ponce-Espana E, Cruz-Chamorro I, Santos-Sanchez G, Bejarano I, Alvarez-Sanchez N, Lardone P, Carrillo-Vico A. | MedComm (2020) | 2025 | | |
| Interplay of gut microbiome and metabolome in various blood pressure phenotypes based on ambulatory BP monitoring reveal new insights in nondipper patients. | Ozbek DA, Koc NS, Inal N, Kablan SE, Kaygusuz Y, Karahan S, Uyaroglu OA, Yildirim T, Ergunay K, Nemutlu E, Akyon Y, Altun B. | J Hypertens | 10.1097/hjh.0000000000004086 | 2025 | | |
| Phylogeny | Polyphenol-mediated microbiome modulation in STEMI patients: a pilot study | Issilbayeva A, Sergazy S, Zhashkeyev A, Gulyayev A, Kozhakhmetov S, Shulgau Z, Nurgaziyev M, Nurgaziyeva A, Zhetkenev S, Mukhanbetzhanov N, Jarmukhanov Z, Mukhanbetzhanova Z, Vinogradova E, Zhumadilov Z, Kushugulova A, Aljofan M. | Front Med (Lausanne) | 2025 | | |
| Metabolism | Investigating the role of Akkermansia muciniphila Akk11 in modulating obesity and intestinal dysbiosis: a comparative study of live and pasteurized treatments. | Feng S, Wang W, Zhang X, Helal SE, Peng N, Zhang Z. | Front Microbiol | 10.3389/fmicb.2025.1638771 | 2025 | |
| A broad inhibitor of acyl-acyl carrier protein synthetases. | Todorinova M, Beld J, Jaremko KL. | Biochem Biophys Rep | 10.1016/j.bbrep.2023.101549 | 2023 | | |
| Effect of Earthworm Digestion on Abundance, Composition and Diversity of Bacterial Pathogens in Sewage Sludge from Wastewater Treatment Plants. | Aira M, Dominguez J. | Microorganisms | 10.3390/microorganisms13112507 | 2025 | | |
| Dietary switch and intermittent fasting ameliorate the disrupted postprandial short-chain fatty acid response in diet-induced obese mice. | Ceperuelo-Mallafre V, Rodriguez-Pena MM, Badia J, Villanueva-Carmona T, Cedo L, Marsal-Beltran A, Benaiges E, Nunez-Roa C, Salmeron-Pelado L, Osuna-Prieto FJ, Bosch R, Pellitero S, Fernandez-Veledo S, Vendrell J. | EBioMedicine | 10.1016/j.ebiom.2025.105827 | 2025 | | |
| Pathogenicity | Eurotium cristatum, a Probiotic Fungus from Fuzhuan Brick Tea, and Its Polysaccharides Ameliorated DSS-Induced Ulcerative Colitis in Mice by Modulating the Gut Microbiota. | Lu X, Jing Y, Zhang N, Cao Y. | J Agric Food Chem | 10.1021/acs.jafc.1c08301 | 2022 | |
| Impact of a defined bacterial community including and excluding Megamonas hypermegale on broiler cecal microbiota and resistance to Salmonella infection. | Schultz Marcolla C, Ju T, Ten K, Sivakumar Sharma U, Moeun L, Willing BP. | Appl Environ Microbiol | 10.1128/aem.00948-25 | 2025 | | |
| Genetics | Bacterial taxonomic and functional changes following oral lyophilized donor fecal microbiota transplantation in patients with ulcerative colitis. | Raich SS, Majzoub ME, Haifer C, Paramsothy S, Shamim MMI, Borody TJ, Leong RW, Kaakoush NO. | mSystems | 10.1128/msystems.00991-25 | 2025 | |
| Predictive Role of Gut Microbiota in Weight Loss Achievement after Bariatric Surgery. | Gutierrez-Repiso C, Garrido-Sanchez L, Alcaide-Torres J, Cornejo-Pareja I, Ocana-Wilhelmi L, Garcia-Fuentes E, Moreno-Indias I, Tinahones FJ. | J Am Coll Surg | 10.1097/xcs.0000000000000145 | 2022 | | |
| Enhancing pediatric attention-deficit hyperactivity disorder treatment: exploring the gut microbiota effects of French maritime pine bark extract and methylphenidate intervention. | Weyns AS, Ahannach S, Van Rillaer T, De Bruyne T, Lebeer S, Hermans N. | Front Nutr | 10.3389/fnut.2024.1422253 | 2024 | | |
| Bacterial dysbiosis in newly diagnosed treatment naïve pediatric ulcerative colitis in Saudi Arabia. | El Mouzan M, Al Mofarreh M, Alsaleem B, Al Sarkhy A, Alanazi A, Khormi M, Almasoud A, Assiri A. | Saudi J Gastroenterol | 10.4103/sjg.sjg_66_24 | 2025 | | |
| Lactobacillus casei Zhang exerts anti-obesity effect to obese glut1 and gut-specific-glut1 knockout mice via gut microbiota modulation mediated different metagenomic pathways. | He Q, Zhang Y, Ma D, Zhang W, Zhang H. | Eur J Nutr | 10.1007/s00394-021-02764-0 | 2022 | | |
| Characterization of the fecal microbiota in gastrointestinal cancer patients and healthy people. | Li N, Bai C, Zhao L, Ge Y, Li X. | Clin Transl Oncol | 10.1007/s12094-021-02754-y | 2022 | | |
| Nutraceutical supplement slim reshaped colon histomorphology and reduces Mucispirillum schaedleri in obese mice. | Freitas JA, Nehmi Filho V, Santamarina AB, Murata GM, Franco LAM, Fonseca JV, Martins RC, Souza GA, Benicio G, Sabbag IM, de Souza EA, Otoch JP, Pessoa AFM. | Front Microbiol | 10.3389/fmicb.2025.1494994 | 2025 | | |
| Microbiota based personalized nutrition improves hyperglycaemia and hypertension parameters and reduces inflammation: a prospective, open label, controlled, randomized, comparative, proof of concept study. | Kallapura G, Prakash AS, Sankaran K, Manjappa P, Chaudhary P, Ambhore S, Dhar D. | PeerJ | 10.7717/peerj.17583 | 2024 | | |
| Phylogeny | Oral-to-rectum microbial transmission in orthopedic patients without a history of intestinal disorders. | Lin G, Kageyama S, Maeda A, Sakamoto E, Ma J, Asakawa M, Furuta M, Yamashita Y, Takeshita T. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1358684 | 2024 | |
| Genetics | Atopic dermatitis-alleviating effects of lactiplantibacillus plantarum LRCC5195 paraprobiotics through microbiome modulation and safety assessment via genomic characterization and in vitro analysis. | Lim A, Baek J, Seo M, Kim KY, Kim S, Kwak W, Lee J, Kwak J, Yoon WJ, Kim W, Yoon S. | Sci Rep | 10.1038/s41598-025-16102-5 | 2025 | |
| Reduced Sulfur Diet Reshapes the Microbiome and Metabolome in Mild-Moderate Ulcerative Colitis. | Ye J, Raman M, Taylor LM, Yousuf M, Panaccione R, Turbide C, Sinha SR, Haskey N. | Int J Mol Sci | 10.3390/ijms26104596 | 2025 | | |
| Comparison of metagenomic analysis of fecal and gastrointestinal tract samples for identifying beneficial gut microorganisms. | Ahn JS, Han EJ, Chung HJ. | Front Microbiol | 10.3389/fmicb.2025.1533580 | 2025 | | |
| Metabolism | Metabolic and transcriptional effects of bazedoxifene/conjugated estrogens in a model of obesity-associated breast cancer risk. | Giles ED, Cook KL, Jenschke RM, Corleto KA, Landrock D, Mahmood TN, Sanchez KE, Levin A, Hursting SD, Kimler BF, Komm BS, Fabian CJ. | JCI Insight | 10.1172/jci.insight.182694 | 2025 | |
| Association between gut microbiota and onset of type 2 diabetes mellitus: a two-sample Mendelian randomization study. | Zhang H, Ma L, Peng W, Wang B, Sun Y. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1327032 | 2024 | | |
| Pathogenicity | Effects of oral sialic acid on gut development, liver function and gut microbiota in mice. | Ma J, Gong S, He Y, Gao W, Hao W, Lan X. | Lett Appl Microbiol | 10.1111/lam.13447 | 2021 | |
| Fecal microbiota transplantation unveils sex-specific differences in a controlled cortical impact injury mouse model. | Pasam T, Dandekar MP. | Front Microbiol | 10.3389/fmicb.2023.1336537 | 2023 | | |
| Combining Bifidobacterium longum subsp. infantis and human milk oligosaccharides synergistically increases short chain fatty acid production ex vivo. | De Bruyn F, James K, Cottenet G, Dominick M, Katja J. | Commun Biol | 10.1038/s42003-024-06628-1 | 2024 | | |
| Multiomics Revealed the Multi-Dimensional Effects of Late Sleep on Gut Microbiota and Metabolites in Children in Northwest China. | Xiang X, Chen J, Zhu M, Gao H, Liu X, Wang Q, Wang Q. | Nutrients | 10.3390/nu15204315 | 2023 | | |
| Association of Gut Dysbiosis with Disease Phenotype and Treatment in Systemic Lupus Erythematosus. | Medina-Martinez I, Gil-Gutierrez R, Garcia-Garcia J, de la Hera-Fernandez FJ, Navarrete-Navarrete N, Zamora-Pasadas M, Ortego-Centeno N, Callejas-Rubio JL, Garcia-Garcia F, Galvez-Peralta J, Rodriguez-Nogales A, Correa-Rodriguez M, Rueda-Medina B. | Med Sci (Basel) | 10.3390/medsci13030151 | 2025 | | |
| Genetics | Amoxicillin Resistance: An In Vivo Study on the Effects of an Approved Formulation on Antibiotic Resistance in Broiler Chickens. | Kerek A, Szabo A, Jerzsele A. | Animals (Basel) | 10.3390/ani15131944 | 2025 | |
| Phylogeny | Distinct gut microbial species, but not phylum-to-genus composition, associate with insulin resistance: a unique perspective from the Kazakh population. | Abildinova GZ, Benberin VV, Vochshenkova TA, Mussin NM, Afshar A, Tamadon A. | Front Microbiol | 10.3389/fmicb.2025.1683885 | 2025 | |
| Machine learning prediction of obesity-associated gut microbiota: identifying Bifidobacterium pseudocatenulatum as a potential therapeutic target. | Wu H, Li Y, Jiang Y, Li X, Wang S, Zhao C, Yang X, Chang B, Yang J, Qiao J. | Front Microbiol | 10.3389/fmicb.2024.1488656 | 2024 | | |
| Gut Microbiota Dysbiosis and Its Role in the Development of Irritable Bowel Syndrome. | Saleem MM, Masood S, Rahmatullah MM, Ayesha Imdad I, Mohammed Aslam Sange A, Nasr D. | Cureus | 10.7759/cureus.83084 | 2025 | | |
| Metabolism | Ginseng Polysaccharides Inhibit Aspergillus sydowii-Driven Lung Adenocarcinoma via Modulating Gut Microbiota-Bile Acid Metabolism Axis. | He J, Shu X, Pan H, Wang M, Song Y, Zhou F, Lian L, Chen L, Ma G, Zhao Y, Li R, Liu L. | Cancers (Basel) | 10.3390/cancers17193134 | 2025 | |
| Prioritizing gut microbial SNPs linked to immunotherapy outcomes in NSCLC patients by integrative bioinformatics analysis. | Raziq MF, Khan N, Manzoor H, Tariq HMA, Rafiq M, Rasool S, Kayani MUR, Huang L. | J Transl Med | 10.1186/s12967-025-06370-0 | 2025 | | |
| Pathogenicity | Inflammation Mediated by Gut Microbiome Alterations Promotes Lung Cancer Development and an Immunosuppressed Tumor Microenvironment. | Rahal Z, Liu Y, Peng F, Yang S, Jamal MA, Sharma M, Moreno H, Damania AV, Wong MC, Ross MC, Sinjab A, Zhou T, Chen M, Tarifa Reischle I, Feng J, Chukwuocha C, Tang E, Abaya C, Lim JK, Leung CH, Lin HY, Deboever N, Lee JJ, Sepesi B, Gibbons DL, Wargo JA, Fujimoto J, Wang L, Petrosino JF, Ajami NJ, Jenq RR, Moghaddam SJ, Cascone T, Hoffman K, Kadara H. | Cancer Immunol Res | 10.1158/2326-6066.cir-24-0469 | 2024 | |
| A Prospective Study on the Association of Mediterranean Diet Adherence and Physical Activity with Inflammatory Bowel Disease in Children. | Lin Y, Li J, Shi Q, Zhang K, Yang J. | J Inflamm Res | 10.2147/jir.s525799 | 2025 | | |
| Enzymology | Novel Endo-beta-N-Acetylglucosaminidases Derived from Human Fecal Samples Selectively Release N-Glycans from Model Glycoproteins. | Bolino M, Haththotuwe Gamage N, Duman H, Abiodun O, De Mello AS, Karav S, Frese SA. | Foods | 10.3390/foods14081288 | 2025 | |
| Concomitant decrease of double-positive lymphocyte population CD4CD8alphaalpha and Faecalibacterium prausnitzii in patients with colorectal cancer. | Touchefeu Y, Duchalais E, Bruley des Varannes S, Alameddine J, Mirallie E, Matysiak-Budnik T, Le Bastard Q, Javaudin F, Rimbert M, Jotereau F, Montassier E. | Eur J Gastroenterol Hepatol | 10.1097/meg.0000000000001842 | 2021 | | |
| Genetics | A novel computational approach for the mining of signature pathways using species co-occurrence networks in gut microbiomes. | Kim S, Thapa I, Ali H. | BMC Microbiol | 10.1186/s12866-024-03633-6 | 2024 | |
| Korean Red Ginseng extract treatment prevents post-antibiotic dysbiosis-induced bone loss in mice. | Kang HJ, Chargo N, Chennupati S, Neugebauer K, Cho JY, Quinn R, McCabe LR, Parameswaran N. | J Ginseng Res | 10.1016/j.jgr.2022.08.006 | 2023 | | |
| Bacterial profiling of colorectal cancer biopsies: a culture-based study in Indian patients. | Kushwaha M, Chaudhary S, Singh AK, Makharia GK, Kumar A. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1535477 | 2025 | | |
| Microbiome Alterations Driven by Trypanosoma cruzi Infection in Two Disjunctive Murine Models. | Castaneda S, Munoz M, Hotez PJ, Bottazzi ME, Paniz-Mondolfi AE, Jones KM, Mejia R, Poveda C, Ramirez JD. | Microbiol Spectr | 10.1128/spectrum.00199-23 | 2023 | | |
| Microbiome gut community structure and functionality are associated with symptom severity in non-responsive celiac disease patients undergoing a gluten-free diet. | Marcos-Zambrano LJ, Lacruz-Pleguezuelos B, Aguilar-Aguilar E, Marcos-Pasero H, Valdes A, Loria-Kohen V, Cifuentes A, Ramirez de Molina A, Diaz-Ruiz A, Pancaldi V, Carrillo de Santa Pau E. | mSystems | 10.1128/msystems.00143-25 | 2025 | | |
| Pathogenicity | A Mediterranean Diet Pattern Improves Intestinal Inflammation Concomitant with Reshaping of the Bacteriome in Ulcerative Colitis: A Randomised Controlled Trial. | Haskey N, Estaki M, Ye J, Shim RK, Singh S, Dieleman LA, Jacobson K, Gibson DL. | J Crohns Colitis | 10.1093/ecco-jcc/jjad073 | 2023 | |
| Genetics | Structural and functional characterization of gut microbiota in dyslipidemic patients from high-altitude Tibetan pastoral areas. | Chen J, Luo Y, Hao Y, Wang Q, Wang Q. | Front Nutr | 10.3389/fnut.2025.1676238 | 2025 | |
| Healthy Ageing and Gut Microbiota: A Study on Longevity in Adults. | Deng L, Xu J, Xue Q, Wei Y, Wang J. | Microorganisms | 10.3390/microorganisms13071657 | 2025 | | |
| Gut Microbiota Patterns Predicting Long-Term Weight Loss Success in Individuals with Obesity Undergoing Nonsurgical Therapy. | Bischoff SC, Nguyen NK, Seethaler B, Beisner J, Kugler P, Stefan T. | Nutrients | 10.3390/nu14153182 | 2022 | | |
| Vibrio cholerae can Recycle Fatty Acids Via an Acyl-Acyl Carrier Protein Synthetase. | Platt AJ, Ma AT, Beld J. | Curr Microbiol | 10.1007/s00284-025-04332-9 | 2025 | | |
| Pathogenicity | Epithelial Dual Oxidase 2 Shapes the Mucosal Microbiome and Contributes to Inflammatory Susceptibility. | Castrillon-Betancur JC, Lopez-Agudelo VA, Sommer N, Cleeves S, Bernardes JP, Weber-Stiehl S, Rosenstiel P, Sommer F. | Antioxidants (Basel) | 10.3390/antiox12101889 | 2023 | |
| Tissue and stool microbiome in pediatric inflammatory bowel disease patients: diversity differs in patients with relapsing and non-relapsing Crohn's disease. | Hrala M, Deissova T, Andrla P, Radova L, Zahornacka S, Bohosova J, Machackova T, Kren L, Hrunka M, Pinkasova T, Ambrozova M, Bosak J, Slaby O, Smajs D, Jabandziev P. | Gut Pathog | 10.1186/s13099-025-00766-5 | 2025 | | |
| Macrophage Metabolic Reprogramming in Inflammatory Bowel Diseases: From Pathogenesis to Therapy. | Zhang YF, Shi TT, Lin YL, Zhu YT, Lin S, Fang TY. | J Inflamm Res | 10.2147/jir.s534447 | 2025 | | |
| Feeding Rainbow Trout with Different Types of Non-Starch Polysaccharides: Impacts on Serum Metabolome and Gut Microbiota. | Zhou H, Liu Y, Fan J, Huang H, Deng J, Tan B. | Metabolites | 10.3390/metabo12121167 | 2022 | | |
| Metabolism | Insights from metagenomics into gut microbiome associated with acute coronary syndrome therapy. | Guan Y, Zhao S, Li J, Zhang W, Guo Z, Luo Y, Jiang X, Li J, Liu J, Chen X, Zhao Z, Zhang Z. | Front Microbiol | 10.3389/fmicb.2024.1369478 | 2024 | |
| Comparative time-series analyses of gut microbiome profiles in genetically and chemically induced lupus-prone mice and the impacts of fecal transplantation. | Chatthanathon P, Leelahavanichkul A, Cheibchalard T, Wilantho A, Hirankarn N, Somboonna N. | Sci Rep | 10.1038/s41598-024-77672-4 | 2024 | | |
| Butyrate-Producing Bacteria and Insulin Homeostasis: The Microbiome and Insulin Longitudinal Evaluation Study (MILES). | Cui J, Ramesh G, Wu M, Jensen ET, Crago O, Bertoni AG, Gao C, Hoffman KL, Sheridan PA, Wong KE, Wood AC, Chen YI, Rotter JI, Petrosino JF, Rich SS, Goodarzi MO. | Diabetes | 10.2337/db22-0168 | 2022 | | |
| Interventions targeting the gut microbiota and their possible effect on gastrointestinal and neurobehavioral symptoms in autism spectrum disorder. | Takyi E, Nirmalkar K, Adams J, Krajmalnik-Brown R. | Gut Microbes | 10.1080/19490976.2025.2499580 | 2025 | | |
| Phylogeny | A Possible Link between Gut Microbiome Composition and Cardiovascular Comorbidities in Psoriatic Patients. | Valentini V, Silvestri V, Bucalo A, Marraffa F, Risicato M, Grassi S, Pellacani G, Ottini L, Richetta AG. | J Pers Med | 10.3390/jpm12071118 | 2022 | |
| Pathogenicity | Amorphous cellulose feed supplement alters the broiler caecal microbiome. | De Maesschalck C, Eeckhaut V, Maertens L, De Lange L, Marchal L, Daube G, Dewulf J, Haesebrouck F, Ducatelle R, Taminau B, Van Immerseel F. | Poult Sci | 10.3382/ps/pez090 | 2019 | |
| Phylogeny | Gut microbial predictors of first-line immunotherapy efficacy in advanced NSCLC patients. | Grenda A, Iwan E, Kuznar-Kaminska B, Bomba A, Bielinska K, Krawczyk P, Chmielewska I, Frak M, Szczyrek M, Rolska-Kopinska A, Jankowski T, Kieszko R, Milanowski J. | Sci Rep | 10.1038/s41598-025-89406-1 | 2025 | |
| Evaluating the Effects of Sugar Shift® Symbiotic on Microbiome Composition and LPS Regulation: A Double-Blind, Placebo-Controlled Study. | Garcia G, Soto J, Netherland M, Hasan NA, Buchaca E, Martinez D, Carlin M, de Jesus Cano R. | Microorganisms | 10.3390/microorganisms12122525 | 2024 | | |
| Antimicrobial Effects of Kelisha Capsule on Escherichia coli Induced Diarrhea in Mice. | Shi G, Lu X, Wang G, Qian K, Peng X, Zhu Y, Wu J, Ke H, Chen L, Zheng Y, Yang T, Shi X, Huang P. | Drug Des Devel Ther | 10.2147/dddt.s511158 | 2025 | | |
| Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate. | Sastre DE, Sultana N, V A S Navarro M, Huliciak M, Du J, Cifuente JO, Flowers M, Liu X, Lollar P, Trastoy B, Guerin ME, Sundberg EJ. | Nat Commun | 10.1038/s41467-024-48802-3 | 2024 | | |
| Systematic review: The gut microbiota as a link between colorectal cancer and obesity. | Ruiz-Malagon AJ, Rodriguez-Sojo MJ, Redondo E, Rodriguez-Cabezas ME, Galvez J, Rodriguez-Nogales A. | Obes Rev | 10.1111/obr.13872 | 2025 | | |
| Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China. | Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1374544 | 2024 | | |
| Machine learning framework for gut microbiome biomarkers discovery and modulation analysis in large-scale obese population. | Liu Y, Zhu J, Wang H, Lu W, Lee YK, Zhao J, Zhang H. | BMC Genomics | 10.1186/s12864-022-09087-2 | 2022 | | |
| Enzymology | Aspirin Reduces Colorectal Tumor Development in Mice and Gut Microbes Reduce its Bioavailability and Chemopreventive Effects. | Zhao R, Coker OO, Wu J, Zhou Y, Zhao L, Nakatsu G, Bian X, Wei H, Chan AWH, Sung JJY, Chan FKL, El-Omar E, Yu J. | Gastroenterology | 10.1053/j.gastro.2020.05.004 | 2020 | |
| Phylogeny | Comparison of Fecal Microbiota and Metabolites Between Captive and Grazing Male Reindeer. | Zhao F, Zhao Q, Li S, Zhu Y, Si H, Feng J, Li Z. | Animals (Basel) | 10.3390/ani14243606 | 2024 | |
| Enterotype-stratified gut microbial signatures in MASLD and cirrhosis based on integrated microbiome data. | Yuan H, Zhou J, Wu X, Wang S, Park S. | Front Microbiol | 10.3389/fmicb.2025.1568672 | 2025 | | |
| Reduced abundance of Fusobacterium signifies cardiovascular benefits of sodium glucose cotransporter 2 inhibitor in type 2 diabetes: a single arm clinical trial. | Yang S, Deng J, Weng X, Ma Z, Lin N, Xiao Y, Zuo R, Hu Y, Zheng C, Zeng X, Lin Q, Hou K. | Front Pharmacol | 10.3389/fphar.2025.1600464 | 2025 | | |
| Boosting the immunotherapy response by nutritional interventions. | Zitvogel L, Kroemer G. | J Clin Invest | 10.1172/jci161483 | 2022 | | |
| Phylogeny | Microbiota of Children With Complex Appendicitis: Different Composition and Diversity of The Microbiota in Children With Complex Compared With Simple Appendicitis. | The SML, Bakx R, Budding AE, de Meij TGJ, van der Lee JH, Bunders MJ, Poort L, Heij HA, van Heurn LWE, Gorter RR. | Pediatr Infect Dis J | 10.1097/inf.0000000000002434 | 2019 | |
| Type 1 interferon signalling orchestrated by gut microbiota suppresses IgE-mediated anaphylaxis associated with vitamin D3 signalling. | Chen B, Song T, Hao F, Yang Z, Yang J. | World Allergy Organ J | 10.1016/j.waojou.2025.101089 | 2025 | | |
| Drugs Versus Microbiota: How Pharmacotherapy Affects Gut and Probiotic Bacteria. | Zawistowska-Rojek A, Tyski S. | Pharmaceuticals (Basel) | 10.3390/ph18091372 | 2025 | | |
| Fecal bacterial biomarkers and blood biochemical indicators as potential key factors in the development of colorectal cancer. | Cai P, Yang Q, Lu J, Dai X, Xiong J. | mSystems | 10.1128/msystems.00043-25 | 2025 | | |
| Biochemical characterization of the first step in sulfonolipid biosynthesis in Alistipes finegoldii. | Radka CD, Miller DJ, Frank MW, Rock CO. | J Biol Chem | 10.1016/j.jbc.2022.102195 | 2022 | | |
| The association between the gut microbiome and 24-h blood pressure measurements in the SCAPIS study. | Lin YT, Sayols-Baixeras S, Baldanzi G, Dekkers KF, Hammar U, Nguyen D, Nielsen N, Eklund AC, Varotsis G, Holm JB, Nielsen HB, Lind L, Bergstrom G, Smith JG, Engstrom G, Arnlov J, Sundstrom J, Orho-Melander M, Fall T. | Commun Med (Lond) | 10.1038/s43856-025-00980-x | 2025 | | |
| Antimicrobial Susceptibility Profile of Rare Anaerobic Bacteria. | Wolf LJ, Stingu CS. | Antibiotics (Basel) | 10.3390/antibiotics12010063 | 2022 | | |
| Immunomodulatory Role of Vitamin D on Gut Microbiome in Children. | Tabassum A, Ali A, Zahedi FD, Ismail NAS. | Biomedicines | 10.3390/biomedicines11051441 | 2023 | | |
| Recipient microbiome-related features predicting metabolic improvement following fecal microbiota transplantation in adults with severe obesity and metabolic syndrome: a secondary analysis of a phase 2 clinical trial. | Zhang Z, Mocanu V, Deehan EC, Hotte N, Zhu Y, Wei S, Kao DH, Karmali S, Birch DW, Walter J, Madsen KL. | Gut Microbes | 10.1080/19490976.2024.2345134 | 2024 | | |
| Fiber Intervention Study in Prader-Willi Syndrome: Insights into Metabolic and Microbiota Shifts. | Tan Q, Peng Y, Deehan EC, Vieira FT, Ho BWP, Afhami S, Wine E, Madsen KL, Field CJ, Pakseresht M, Ilkayeva O, Newgard CB, Walter J, Tun HM, Haqq AM. | J Clin Endocrinol Metab | 10.1210/clinem/dgaf142 | 2025 | | |
| The intestinal mucosa-associated microbiota in IBD-associated arthritis displays lower relative abundance of Roseburia intestinalis. | Alizadeh M, Wong U, Siaton BC, France MT, Patil SA, George L, Hudhud D, Motwani K, Scott WH, Raufman JP, von Rosenvinge EC, Cross RK, Ravel J. | Gut Microbes | 10.1080/19490976.2025.2505114 | 2025 | | |
| May Sulfites in Wine Affect Gut Microbiota? An In Vitro Study of Their Digestion and Interplay with Wine Polyphenols. | Relano de la Guia E, Cueva C, Molinero N, Ruano A, Motilva MJ, Bartolome B, Moreno-Arribas MV. | J Agric Food Chem | 10.1021/acs.jafc.5c02710 | 2025 | | |
| Phylogeny | The gut-kidney axis is regulated by astragaloside IV to inhibit cyclosporine A-induced nephrotoxicity. | Han C, Gao RR, Zhou L, Li W. | Front Pharmacol | 10.3389/fphar.2025.1518481 | 2025 | |
| Genetics | Systems genetics uncovers associations among host amylase locus, gut microbiome, and metabolic traits in mice. | Zhang Q, Hutchison ER, Pan C, Warren MF, Keller MP, Attie AD, Lusis AJ, Rey FE. | Microbiome | 10.1186/s40168-025-02093-y | 2025 | |
| Pathogenicity | Konjaku flour reduces obesity in mice by modulating the composition of the gut microbiota. | Kang Y, Li Y, Du Y, Guo L, Chen M, Huang X, Yang F, Hong J, Kong X. | Int J Obes (Lond) | 10.1038/s41366-018-0187-x | 2019 | |
| Initial gut microbiota composition is a determining factor in the promotion of colorectal cancer by oral iron supplementation: evidence from a murine model. | Cuisiniere T, Hajjar R, Oliero M, Calve A, Fragoso G, Rendos HV, Gerkins C, Taleb N, Gagnon-Konamna M, Dagbert F, Loungnarath R, Sebajang H, Schwenter F, Wassef R, Ratelle R, De Broux E, Richard C, Santos MM. | Microbiome | 10.1186/s40168-025-02101-1 | 2025 | | |
| Exploring the Gut Microbiota: Key Insights Into Its Role in Obesity, Metabolic Syndrome, and Type 2 Diabetes. | Sasidharan Pillai S, Gagnon CA, Foster C, Ashraf AP. | J Clin Endocrinol Metab | 10.1210/clinem/dgae499 | 2024 | | |
| Genetics | Non-small cell lung cancer patients treated with Anti-PD1 immunotherapy show distinct microbial signatures and metabolic pathways according to progression-free survival and PD-L1 status. | Dora D, Ligeti B, Kovacs T, Revisnyei P, Galffy G, Dulka E, Krizsan D, Kalcsevszki R, Megyesfalvi Z, Dome B, Weiss GJ, Lohinai Z. | Oncoimmunology | 10.1080/2162402x.2023.2204746 | 2023 | |
| Metabolism | Distinct Diet-Microbiota-Metabolism Interactions in Overweight and Obese Pregnant Women: a Metagenomics Approach. | Lotankar M, Mokkala K, Houttu N, Koivuniemi E, Sorensen N, Nielsen HB, Munukka E, Lahti L, Laitinen K. | Microbiol Spectr | 10.1128/spectrum.00893-21 | 2022 | |
| Impact of occupational pesticide exposure on the human gut microbiome. | Gois MFB, Fernandez-Pato A, Huss A, Gacesa R, Wijmenga C, Weersma RK, Fu J, Vermeulen RCH, Zhernakova A, Lenters VC, Kurilshikov A. | Front Microbiol | 10.3389/fmicb.2023.1223120 | 2023 | | |
| Bariatric Surgery Is Associated with Lower Concentrations of Fecal Secondary Bile Acids and Their Metabolizing Microbial Enzymes: A Pilot Study. | Hussan H, Ali MR, Lyo V, Webb A, Pietrzak M, Zhu J, Choueiry F, Li H, Cummings BP, Marco ML, Medici V, Clinton SK. | Obes Surg | 10.1007/s11695-024-07420-0 | 2024 | | |
| Effects of GLP-1 Analogues and Agonists on the Gut Microbiota: A Systematic Review. | Gofron KK, Wasilewski A, Malgorzewicz S. | Nutrients | 10.3390/nu17081303 | 2025 | | |
| The Relationship of Adherence to the Mediterranean Diet with Disease Activity and Quality of Life in Crohn's Disease Patients. | Migdanis A, Migdanis I, Gkogkou ND, Papadopoulou SK, Giaginis C, Manouras A, Polyzou Konsta MA, Kosti RI, Oikonomou KA, Argyriou K, Potamianos S, Kapsoritakis A. | Medicina (Kaunas) | 10.3390/medicina60071106 | 2024 | | |
| Effects of enriched seafood sticks (heat-inactivated B. animalis subsp. lactis CECT 8145, inulin, omega-3) on cardiometabolic risk factors and gut microbiota in abdominally obese subjects: randomized controlled trial. | Companys J, Calderon-Perez L, Pla-Paga L, Llaurado E, Sandoval-Ramirez BA, Gosalbes MJ, Arregui A, Barandiaran M, Caimari A, Del Bas JM, Arola L, Valls RM, Sola R, Pedret A. | Eur J Nutr | 10.1007/s00394-022-02904-0 | 2022 | | |
| Curcumin beta-D-Glucuronide Modulates an Autoimmune Model of Multiple Sclerosis with Altered Gut Microbiota in the Ileum and Feces. | Khadka S, Omura S, Sato F, Nishio K, Kakeya H, Tsunoda I. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.772962 | 2021 | | |
| Phylogeny | Identifying fecal microbiota signatures of colorectal cancer in a Vietnamese cohort. | Nhung PTT, Le HTT, Nguyen QH, Huyen DT, Quyen DV, Song LH, Van Thuan T, Tran TTT. | Front Microbiol | 10.3389/fmicb.2024.1388740 | 2024 | |
| Moxibustion attenuates liver metastasis of colorectal cancer by regulating gut microbial dysbiosis. | Song YF, Zhou JY, Zhuang Y, Guo J, Wang XD, Wang YH, Zhao TT, Chen L, Chen H, Sun JH, Pei LX. | Am J Cancer Res | 2023 | | ||
| Gut microbial features may influence antiviral IgG levels after vaccination against viral respiratory infectious diseases: the evidence from two-sample bidirectional mendelian randomization. | Tu J, Wang Y, Ye X, Wang Y, Zou Y, Jia L, Yang S, Yu R, Liu W, Huang P. | BMC Infect Dis | 10.1186/s12879-024-09189-0 | 2024 | | |
| Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study. | Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y. | Front Microbiol | 10.3389/fmicb.2023.1181328 | 2023 | | |
| Helicobacter pylori serology is associated with worse overall survival in patients with melanoma treated with immune checkpoint inhibitors. | Tonneau M, Nolin-Lapalme A, Kazandjian S, Auclin E, Panasci J, Benlaifaoui M, Ponce M, Al-Saleh A, Belkaid W, Naimi S, Mihalcioiu C, Watson I, Bouin M, Miller W, Hudson M, Wong MK, Pezo RC, Turcotte S, Belanger K, Jamal R, Oster P, Velin D, Richard C, Messaoudene M, Elkrief A, Routy B. | Oncoimmunology | 10.1080/2162402x.2022.2096535 | 2022 | | |
| Intratumorally specific microbial-derived lipopolysaccharide contributes to non-small cell lung cancer progression. | Sha G, Wu Z, Wang B, Ding Y, Xiao Z, Zhang W, Zhou J, Zhou Y, Ji G, Tian Z, Zhang W, Zhao X. | Virulence | 10.1080/21505594.2025.2548626 | 2025 | | |
| Poria cocos polysaccharides exert prebiotic function to attenuate the adverse effects and improve the therapeutic outcome of 5-FU in ApcMin/+ mice. | Yin L, Huang G, Khan I, Su L, Xia W, Law BYK, Wong VKW, Wu Q, Wang J, Leong WK, Hsiao WLW. | Chin Med | 10.1186/s13020-022-00667-8 | 2022 | | |
| Exploring Bile-Acid Changes and Microflora Profiles in Chicken Fatty Liver Disease Model. | Yang WY, Chang PE, Li SJ, Ding ST, Lin YY. | Animals (Basel) | 10.3390/ani14070992 | 2024 | | |
| Comparative effects of vegetarian diet and rendered animal by-product on the chicken gut health. | Yan R, Manjunatha V, Thomas A, Shankar V, Lumpkins B, Hoerr FJ, Greene A, Jiang X. | Poult Sci | 10.1016/j.psj.2025.105360 | 2025 | | |
| Fecal microbiota transplantation significantly improved respiratory failure of amyotrophic lateral sclerosis. | Yan J, Chen H, Zhang Y, Peng L, Wang Z, Lan X, Yu S, Yang Y. | Gut Microbes | 10.1080/19490976.2024.2353396 | 2024 | | |
| Fecal Lcn-2 level is a sensitive biological indicator for gut dysbiosis and intestinal inflammation in multiple sclerosis. | Yadav SK, Ito N, Mindur JE, Kumar H, Youssef M, Suresh S, Kulkarni R, Rosario Y, Balashov KE, Dhib-Jalbut S, Ito K. | Front Immunol | 10.3389/fimmu.2022.1015372 | 2022 | | |
| A comprehensive narrative review on precision medicine approach to hypertension: exploring the role of genetics, epigenetics, microbiome, and artificial intelligence. | Sami A, Ashraf R, Nisar S, Mustehsan ZH, Javed MA, Ozsahin DU, Waheed Y. | J Health Popul Nutr | 10.1186/s41043-025-01058-z | 2025 | | |
| Alterations in the Gut Microbiota of Tibetan Patients With Echinococcosis. | Cao D, Pang M, Wu D, Chen G, Peng X, Xu K, Fan H. | Front Microbiol | 10.3389/fmicb.2022.860909 | 2022 | | |
| High-fat diet feeding exacerbates HIV-1 rectal transmission. | Lohani SC, Ramer-Tait AE, Li Q. | mSystems | 10.1128/msystems.01322-23 | 2024 | | |
| Lymphocyte and neutrophil count combined with intestinal bacteria abundance predict the severity of COVID-19. | Chen L, Yin Z, Zhou D, Li X, Yu C, Luo C, Jin Y, Zhang L, Song J, Rasche L, Einsele H, Tu L, Zhou X, Bai T, Hou X. | Microbiol Spectr | 10.1128/spectrum.03027-23 | 2024 | | |
| A specific gut microbiota signature is associated with an enhanced GLP-1 and GLP-2 secretion and improved metabolic control in patients with type 2 diabetes after metabolic Roux-en-Y gastric bypass. | Hernandez-Montoliu L, Rodriguez-Pena MM, Puig R, Astiarraga B, Guerrero-Perez F, Virgili N, Lopez-Urdiales R, Osorio J, Monseny R, Lazzara C, Sobrino L, Perez-Maraver M, Perez-Prieto M, Pellitero S, Fernandez-Veledo S, Vendrell J, Vilarrasa N. | Front Endocrinol (Lausanne) | 10.3389/fendo.2023.1181744 | 2023 | | |
| A low-cost, easy-to-use prototype bioreactor model for the investigation of human gut microbiota: validation using a prebiotic treatment. | Agrinier AL, Pilon G, Marette A. | Front Microbiol | 10.3389/fmicb.2024.1250366 | 2024 | | |
| Clinical effectiveness of fecal microbial transplantation for metabolic syndrome: Advances in clinical efficacy and multi-omics research. | Wang H, Tian J, Mi J. | Curr Res Microb Sci | 10.1016/j.crmicr.2025.100415 | 2025 | | |
| Genetics | Shotgun Metagenomics Study Suggests Alteration in Sulfur Metabolism and Oxidative Stress in Children with Autism and Improvement after Microbiota Transfer Therapy. | Nirmalkar K, Qureshi F, Kang DW, Hahn J, Adams JB, Krajmalnik-Brown R. | Int J Mol Sci | 10.3390/ijms232113481 | 2022 | |
| Limited predictive value of the gut microbiome and metabolome for response to biological therapy in inflammatory bowel disease. | Prins FM, Hidding IJ, Klaassen MAY, Collij V, Schultheiss JPD, Uniken Venema WTC, Bangma A, Aardema JB, Jansen BH, Mares WGN, Witteman BJM, Festen EAM, Dijkstra G, Visschedijk MC, Fidder HH, Vich Vila A, Oldenburg B, Gacesa R, Weersma RK. | Gut Microbes | 10.1080/19490976.2024.2391505 | 2024 | | |
| Multi-omics analysis of fecal samples in colorectal cancer Egyptians patients: a pilot study. | Khattab RH, Abo-Hammam RH, Salah M, Hanora AM, Shabayek S, Zakeer S. | BMC Microbiol | 10.1186/s12866-023-02991-x | 2023 | | |
| Parvimonas micra forms a distinct bacterial network with oral pathobionts in colorectal cancer patients. | Lowenmark T, Kohn L, Kellgren T, Rosenbaum W, Bronnec V, Lofgren-Burstrom A, Zingmark C, Larsson P, Dahlberg M, Schroeder BO, Wai SN, Ljuslinder I, Edin S, Palmqvist R. | J Transl Med | 10.1186/s12967-024-05720-8 | 2024 | | |
| Pathogenicity | Alterations in Gut Microbiome-Host Relationships After Immune Perturbation in Patients With Multiple Sclerosis. | Gupta VK, Janda GS, Pump HK, Lele N, Cruz I, Cohen I, Ruff WE, Hafler DA, Sung J, Longbrake EE. | Neurol Neuroimmunol Neuroinflamm | 10.1212/nxi.0000000000200355 | 2025 | |
| In Vitro and In Vivo Antihyperglycemic Effects of New Metabiotics from Boletus edulis. | Zanfirescu A, Avram I, Gatea F, Rosca R, Vamanu E. | Life (Basel) | 10.3390/life14010068 | 2023 | | |
| Zooming into Gut Dysbiosis in Parkinson's Disease: New Insights from Functional Mapping. | Turco L, Opallo N, Buommino E, De Caro C, Pirozzi C, Mattace Raso G, Lembo F, Coretti L. | Int J Mol Sci | 10.3390/ijms24119777 | 2023 | | |
| Impact of cigarette smoking on gut microbial dysbiosis: a structured literature review. | Imade EE, Obayagbona NO. | Gut Microbiome (Camb) | 10.1017/gmb.2024.3 | 2024 | | |
| The Relationship Between Gut Microbiome Features and Chemotherapy Response in Gastrointestinal Cancer. | Li N, Bai C, Zhao L, Sun Z, Ge Y, Li X. | Front Oncol | 10.3389/fonc.2021.781697 | 2021 | | |
| Metabolism | Treatment-Related Mechanisms of Tibetan Medicine Terminalia chebula (TC) Aqueous Extract Against Mouse Gastroenteritis Caused by Yak-Origin Salmonella Determined Using Intestinal Microbiome Analysis and Metabolomics. | Li D, Zhang K, Xue X, Bai Z, Yang, Qi J, Suolang S. | Animals (Basel) | 10.3390/ani15050755 | 2025 | |
| Gut microbial signatures are associated with Lynch syndrome (LS) and cancer history in Druze communities in Israel. | Naddaf R, Carasso S, Reznick-Levi G, Hasnis E, Qarawani A, Maza I, Gefen T, Half EE, Geva-Zatorsky N. | Sci Rep | 10.1038/s41598-023-47723-3 | 2023 | | |
| Association of Gut Microbial Dysbiosis and Hypertension: A Systematic Review. | Naik SS, Ramphall S, Rijal S, Prakash V, Ekladios H, Mulayamkuzhiyil Saju J, Mandal N, Kham NI, Shahid R, Venugopal S. | Cureus | 10.7759/cureus.29927 | 2022 | | |
| Identification of a 10-species microbial signature of inflammatory bowel disease by machine learning and external validation. | Yu S, Li J, Ye Z, Zhang M, Guo X, Wang X, Liu L, Wang Y, Zhou X, Fu W, Zhang MQ, Chen YG. | Cell Regen | 10.1186/s13619-025-00246-w | 2025 | | |
| Genetics | Gut microbiota dysbiosis induced by alcohol exposure in pubertal and adult mice. | Yang J, Wang H, Lin X, Liu J, Feng Y, Bai Y, Liang H, Hu T, Wu Z, Lai J, Liu J, Zou Y, Wei S, Yan P. | mSystems | 10.1128/msystems.01366-24 | 2024 | |
| Genetics | Exploration of fecal microbiota in newly diagnosed patients with inflammatory bowel disease using shotgun metagenomics. | Orejudo M, Gomez MJ, Riestra S, Rivero M, Gutierrez A, Rodriguez-Lago I, Fernandez-Salazar L, Ceballos D, Benitez JM, Aguas M, Baston-Rey I, Bermejo F, Casanova MJ, Lorente-Poyatos RH, Ber Y, Ginard D, Esteve M, de Francisco R, Garcia MJ, Frances R, Rodriguez A, Alcaide Suarez N, Guerra Del Rio E, Soto P, Nos P, Barreiro-de Acosta M, Guerra I, Hervias Cruz D, Dominguez Cajal M, Royo V, Aceituno M, Aldars-Garcia L, Garre A, Ramirez C, Soleto I, Schuppe-Koistinen I, Engstrand L, Baldan-Martin M, Sanchez-Cabo F, Gisbert JP, Chaparro M. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1595884 | 2025 | |
| The microbiome of the neovagina: a systematic review and comparison of surgical techniques. | Stoehr JR, Moss C, A HJ. | Int J Transgend Health | 10.1080/26895269.2023.2237014 | 2024 | | |
| Microbial Community of Healthy Thai Vegetarians and Non-Vegetarians, Their Core Gut Microbiota, and Pathogen Risk. | Ruengsomwong S, La-Ongkham O, Jiang J, Wannissorn B, Nakayama J, Nitisinprasert S. | J Microbiol Biotechnol | 10.4014/jmb.1603.03057 | 2016 | | |
| Polysaccharide from Edible Alga Enteromorpha clathrata Improves Ulcerative Colitis in Association with Increased Abundance of Parabacteroides spp. in the Gut Microbiota of Dextran Sulfate Sodium-Fed Mice. | Ma M, Fu T, Wang Y, Zhang A, Gao P, Shang Q, Yu G. | Mar Drugs | 10.3390/md20120764 | 2022 | | |
| Enzymology | Statin therapy associated Lactobacillus intestinalis attenuates pancreatic fibrosis through remodeling intestinal homeostasis. | Sui Y, Zhang T, Ou S, Li G, Liu L, Lu T, Zhang C, Cao Y, Bai R, Zhou H, Zhao X, Yuan Y, Wang G, Chen H, Kong R, Sun B, Li L. | NPJ Biofilms Microbiomes | 10.1038/s41522-025-00695-w | 2025 | |
| Florfenicol-induced dysbiosis impairs intestinal homeostasis and host immune system in laying hens. | Yu K, Choi I, Kim M, Pyung YJ, Lee JS, Choi Y, Won S, Kim Y, Park BC, Han SH, Park TS, Dalgaard TS, Yun CH. | J Anim Sci Biotechnol | 10.1186/s40104-025-01186-w | 2025 | | |
| Genetics | Screening potential biomarkers associated with insulin resistance in high-fat diet-fed mice by integrating metagenomics and untargeted metabolomics. | Zhou Y, Tang J, Du W, Zhang Y, Ye B-C. | Microbiol Spectr | 10.1128/spectrum.04094-23 | 2024 | |
| Associations of fruit, whole grain, and total energy intakes with gut microbiome diversity and composition. | Wang Y, Zhang K, Dai L, Sun F, Wang D, Meng S, Zhao J, Liu Y, Liu W, Li C, Wang Y, Lu W, Zhu Y. | Food Nutr Res | 10.29219/fnr.v67.9725 | 2023 | | |
| Taxonomic and functional profiling of fecal metagenomes for the early detection of colorectal cancer. | Wu X, Tang Z, Zhao R, Wang Y, Wang X, Liu S, Zou H. | Front Oncol | 10.3389/fonc.2023.1218056 | 2023 | | |
| Phylogeny | Mycobacterium avium subspecies paratuberculosis (MAP) infection, and its impact on gut microbiome of individuals with multiple sclerosis. | Ashraf H, Dikarlo P, Masia A, Zarbo IR, Solla P, Ijaz UZ, Sechi LA. | Sci Rep | 10.1038/s41598-024-74975-4 | 2024 | |
| Temporal Dynamics of the Intestinal Microbiome Following Short-Term Dietary Restriction. | Anderson EM, Rozowsky JM, Fazzone BJ, Schmidt EA, Stevens BR, O'Malley KA, Scali ST, Berceli SA. | Nutrients | 10.3390/nu14142785 | 2022 | | |
| Effect of probiotics intake on constipation in children: an umbrella review. | Dong M, Wu Y, Zhang M, Chen P, Zhang Z, Wang S. | Front Nutr | 10.3389/fnut.2023.1218909 | 2023 | | |
| Pathogenicity | Effects of Smoking on Inflammatory Markers in a Healthy Population as Analyzed via the Gut Microbiota. | Yan S, Ma Z, Jiao M, Wang Y, Li A, Ding S. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.633242 | 2021 | |
| 2'FL and LNnT Exert Antipathogenic Effects against C. difficile ATCC 9689 In Vitro, Coinciding with Increased Levels of Bifidobacteriaceae and/or Secondary Bile Acids. | Vigsnaes LK, Ghyselinck J, Van den Abbeele P, McConnell B, Moens F, Marzorati M, Bajic D. | Pathogens | 10.3390/pathogens10080927 | 2021 | | |
| Phylogeny | Standardization of 16S rRNA gene sequencing using nanopore long read sequencing technology for clinical diagnosis of culture negative infections. | Butler I, Turner O, Mohammed K, Akhtar M, Evans D, Lambourne J, Harris K, O'Sullivan DM, Sergaki C. | Front Cell Infect Microbiol | 10.3389/fcimb.2025.1517208 | 2025 | |
| Multi-Omics Analysis Reveals Intratumor Microbes as Immunomodulators in Colorectal Cancer. | Liu Z, Zhang X, Zhang H, Zhang H, Yi Z, Zhang Q, Liu Q, Liu X. | Microbiol Spectr | 10.1128/spectrum.05038-22 | 2023 | | |
| Restoration of intestinal secondary bile acid synthesis: A potential approach to improve pancreatic beta cell function in type 1 diabetes. | Liu Q, Hua Y, He R, Xiang L, Li S, Zhang Y, Chen R, Qian L, Jiang X, Wang C, Li Y, Wu H, Liu Y. | Cell Rep Med | 10.1016/j.xcrm.2025.102130 | 2025 | | |
| Pathogenicity | The Influence of Probiotic Supplementation on the Obesity Indexes, Neuroinflammatory and Oxidative Stress Markers, Gut Microbial Diversity, and Working Memory in Obese Thai Children. | Khongtan S, Sivamaruthi BS, Thangaleela S, Kesika P, Bharathi M, Sirilun S, Choeisoongnern T, Peerajan S, Sittiprapaporn P, Chaiyasut C. | Foods | 10.3390/foods12213890 | 2023 | |
| Genetics | Early-life gut microbiome maturity regulates blood-brain barrier and cognitive development. | Zemmel ZM, Fan X, Yu Y, Markiewicz E, Tsai HM, Lu L, Little JC, Ramaswamy R, Andrews B, Claud EC, Lu J. | Gut Microbes | 10.1080/19490976.2025.2551879 | 2025 | |
| Epilactose as a Promising Butyrate-Promoter Prebiotic via Microbiota Modulation. | Cardoso BB, Amorim C, Franco-Duarte R, Alves JI, Barbosa SG, Silverio SC, Rodrigues LR. | Life (Basel) | 10.3390/life14050643 | 2024 | | |
| Protection effect of gut microbiota composition and acetate absorption against hypertension-induced damages on the longevity population in Guangxi, China. | Zhang Q, Meng N, Liu Y, Zhao H, Zhao Z, Hao D, Li R, Han K, Li H, Ma J, Yu X, Qi Z, Li Q. | Front Nutr | 10.3389/fnut.2022.1070223 | 2022 | | |
| Enzymology | Druggable proteins of Alistipes reveal promising antimicrobial targets against chronic intestinal inflammation. | Sohail S, Wisal A, Rana S, Abid Khan RM, Ullah A, Khan FA, Irfan M, Imran M, Carvalho PVSD, Rozental R, Shaheen F, Hassan SS. | Front Pharmacol | 10.3389/fphar.2025.1555062 | 2025 | |
| Microbiota and Serum Metabolic Profile Changes in Korean Native Hanwoo Steer in Response to Diet Feeding Systems. | Jung JS, Soundharrajan I, Kim D, Baik M, Ha S, Choi KC. | Int J Mol Sci | 10.3390/ijms232012391 | 2022 | | |
| Microbial dysbiosis index for assessing colitis status in mouse models: A systematic review and meta-analysis. | Kim MJ, Jung DR, Lee JM, Kim I, Son H, Kim ES, Shin JH. | iScience | 10.1016/j.isci.2023.108657 | 2024 | | |
| Pathogenicity | Aging-Induced Dysbiosis of Gut Microbiota as a Risk Factor for Increased Listeria monocytogenes Infection. | Alam MS, Gangiredla J, Hasan NA, Barnaba T, Tartera C. | Front Immunol | 10.3389/fimmu.2021.672353 | 2021 | |
| Prediction model of poorly differentiated colorectal cancer (CRC) based on gut bacteria. | Qi Z, Zhibo Z, Jing Z, Zhanbo Q, Shugao H, Weili J, Jiang L, Shuwen H. | BMC Microbiol | 10.1186/s12866-022-02712-w | 2022 | | |
| Pathogenicity | Oral iron supplementation after antibiotic exposure induces a deleterious recovery of the gut microbiota. | Cuisiniere T, Calve A, Fragoso G, Oliero M, Hajjar R, Gonzalez E, Santos MM. | BMC Microbiol | 10.1186/s12866-021-02320-0 | 2021 | |
| Phylogeny | Classification of Parabacteroides distasonis and other Bacteroidetes using O- antigen virulence gene: RfbA-Typing and hypothesis for pathogenic vs. probiotic strain differentiation. | Bank NC, Singh V, Rodriguez-Palacios A. | Gut Microbes | 10.1080/19490976.2021.1997293 | 2022 | |
| Effect of combined probiotics and doxycycline therapy on the gut-skin axis in rosacea. | Yu J, Duan Y, Zhang M, Li Q, Cao M, Song W, Zhao F, Kwok L-Y, Zhang H, Li R, Sun Z. | mSystems | 10.1128/msystems.01201-24 | 2024 | | |
| Genetics | A multi-omics approach to overeating and inactivity-induced muscle atrophy in db/db mice. | Okamura T, Hamaguchi M, Kobayashi G, Ichikawa T, Hasegawa Y, Miyoshi T, Senmaru T, Nakanishi N, Sasano R, Fukui M. | J Cachexia Sarcopenia Muscle | 10.1002/jcsm.13550 | 2024 | |
| Surgery for Crohn's Disease Is Associated With a Dysbiotic Microbiome and Metabolome: Results From Two Prospective Cohorts. | Lewis JD, Daniel SG, Li H, Hao F, Patterson AD, Hecht AL, Brensinger CM, Wu GD, Bittinger K, DINE-CD, SPARC IBD Investigators. | Cell Mol Gastroenterol Hepatol | 10.1016/j.jcmgh.2024.05.005 | 2024 | | |
| A Novel Efficient L-Lysine Exporter Identified by Functional Metagenomics. | Malla S, van der Helm E, Darbani B, Wieschalka S, Forster J, Borodina I, Sommer MOA. | Front Microbiol | 10.3389/fmicb.2022.855736 | 2022 | | |
| A review on gut microbiota: a central factor in the pathophysiology of obesity. | Cunningham AL, Stephens JW, Harris DA. | Lipids Health Dis | 10.1186/s12944-021-01491-z | 2021 | | |
| Genetics | Exploring the Microbial Community and Functional Characteristics of the Livestock Feces Using the Whole Metagenome Shotgun Sequencing. | Kim H, Kim ES, Cho JH, Song M, Cho JH, Kim S, Keum GB, Kwak J, Doo H, Pandey S, Park SH, Lee JH, Jung H, Hur TY, Kim JK, Oh KK, Kim HB, Lee JH. | J Microbiol Biotechnol | 10.4014/jmb.2209.09013 | 2023 | |
| Distinctive patterns of sulfide- and butyrate-metabolizing bacteria after bariatric surgery: potential implications for colorectal cancer risk. | Hussan H, Clinton SK, Grainger EM, Webb M, Wang C, Webb A, Needleman B, Noria S, Zhu J, Choueiry F, Pietrzak M, Bailey MT. | Gut Microbes | 10.1080/19490976.2023.2255345 | 2023 | | |
| Dietary Supplement of Amomum villosum Lour. Polysaccharide Attenuates Ulcerative Colitis in BALB/c Mice. | Luo D, Zeng J, Guan J, Xu Y, Jia RB, Chen J, Jiang G, Zhou C. | Foods | 10.3390/foods11223737 | 2022 | | |
| Maternal Exposure to Endocrine-Disrupting Chemicals: Analysis of Their Impact on Infant Gut Microbiota Composition. | Vacca M, Calabrese FM, Loperfido F, Maccarini B, Cerbo RM, Sommella E, Salviati E, Voto L, De Angelis M, Ceccarelli G, Di Napoli I, Raspini B, Porri D, Civardi E, Garofoli F, Campiglia P, Cena H, De Giuseppe R. | Biomedicines | 10.3390/biomedicines12010234 | 2024 | | |
| Breast cancer but not the menopausal status is associated with small changes of the gut microbiota. | Zeber-Lubecka N, Kulecka M, Jagiello-Gruszfeld A, Dabrowska M, Kluska A, Piatkowska M, Baginska K, Glowienka M, Surynt P, Tenderenda M, Mikula M, Ostrowski J. | Front Oncol | 10.3389/fonc.2024.1279132 | 2024 | | |
| Rapid design of bacteriophage cocktails to suppress the burden and virulence of gut-resident carbapenem-resistant Klebsiella pneumoniae. | Rotman E, McClure S, Glazier J, Fuerte-Stone J, Foldi J, Erani A, McGann R, Arnold J, Lin H, Valaitis S, Mimee M. | Cell Host Microbe | 10.1016/j.chom.2024.09.004 | 2024 | | |
| Breaking the Cycle: Can Vitamin D Bridge the Gap Between Gut Microbiota and Immune Dynamics in Multiple Sclerosis? | Gencer Bingol F, Kocyigit E, Celik E, Agagunduz D, Budan F. | Int J Mol Sci | 10.3390/ijms26125464 | 2025 | | |
| Oral exposure to Staphylococcus aureus enterotoxin B could promote the Ovalbumin-induced food allergy by enhancing the activation of DCs and T cells. | Yuan J, Tong P, Meng X, Wu Y, Li X, Gao J, Chen H. | Front Immunol | 10.3389/fimmu.2023.1250458 | 2023 | | |
| Pathogenicity | Gut microbiota composition is associated with disease severity and host immune responses in COVID-19. | Fan R, Liu S, Sun N, Yang Y, Deng X, Hu B, Sun C, Wen C, Li H, Cheng D, Huang C, Hou P, Zhang T. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1274690 | 2023 | |
| Gut Microbiota and Host Cometabolism Are Altered by Patiromer-Induced Changes in Serum and Stool Potassium. | Gao B, Friedman ES, Regunathan R, Shrivastava A, Barrows IR, Amdur RL, Andrews SC, Barrows ED, Raj DS. | Kidney Int Rep | 10.1016/j.ekir.2020.12.026 | 2021 | | |
| Phylogeny | Local Delivery of Streptomycin in Microcontainers Facilitates Colonization of Streptomycin-Resistant Escherichia coli in the Rat Colon. | Torp AM, Kamguyan K, Christfort JF, Kristensen KA, Guerra P, Daniel N, Nielsen LH, Zor K, Chassaing B, Boisen A, Bahl MI, Licht TR. | Appl Environ Microbiol | 10.1128/aem.00734-22 | 2022 | |
| A Review of the Use of Native and Engineered Probiotics for Colorectal Cancer Therapy. | Han H, Zhang Y, Tang H, Zhou T, Khan A. | Int J Mol Sci | 10.3390/ijms25073896 | 2024 | | |
| Enzymology | Structural and Functional Alterations of Gut Microbiota in Males With Hyperuricemia and High Levels of Liver Enzymes. | Sheng S, Chen J, Zhang Y, Qin Q, Li W, Yan S, Wang Y, Li T, Gao X, Tang L, Li A, Ding S. | Front Med (Lausanne) | 10.3389/fmed.2021.779994 | 2021 | |
| Pathogenicity | Dual-Hit Model of Parkinson's Disease: Impact of Dysbiosis on 6-Hydroxydopamine-Insulted Mice-Neuroprotective and Anti-Inflammatory Effects of Butyrate. | Avagliano C, Coretti L, Lama A, Pirozzi C, De Caro C, De Biase D, Turco L, Mollica MP, Paciello O, Calignano A, Meli R, Lembo F, Mattace Raso G. | Int J Mol Sci | 10.3390/ijms23126367 | 2022 | |
| Amelioration of Colitis by a Gut Bacterial Consortium Producing Anti-Inflammatory Secondary Bile Acids. | Zhou C, Wang Y, Li C, Xie Z, Dai L. | Microbiol Spectr | 10.1128/spectrum.03330-22 | 2023 | | |
| The Potential Role of Boron in the Modulation of Gut Microbiota Composition: An In Vivo Pilot Study. | Senturk NB, Kasapoglu B, Sahin E, Ozcan O, Ozansoy M, Ozansoy MB, Siyah P, Sezerman U, Sahin F. | Pharmaceuticals (Basel) | 10.3390/ph17101334 | 2024 | | |
| Putrescine Supplementation Limits the Expansion of pks+ Escherichia coli and Tumor Development in the Colon. | Oliero M, Cuisiniere T, Ajayi AS, Gerkins C, Hajjar R, Fragoso G, Calve A, Vennin Rendos H, Mathieu-Denoncourt A, Dagbert F, De Broux E, Loungnarath R, Schwenter F, Sebajang H, Ratelle R, Wassef R, Richard C, Duperthuy M, Gravel AE, Vincent AT, Santos MM. | Cancer Res Commun | 10.1158/2767-9764.crc-23-0355 | 2024 | | |
| Genetics | Effect of minocycline, methyl prednisolone, or combination treatment on the colonic bacterial population in a state of colonic inflammation using the murine dextran sulfate sodium model. | Khajah MA, Hawai S. | Microb Cell Fact | 10.1186/s12934-023-02242-8 | 2023 | |
| Genetics | Correlation of the gut microbiome and immune-related adverse events in gastrointestinal cancer patients treated with immune checkpoint inhibitors. | Zhang Y, Cheng S, Zou H, Han Z, Xie T, Zhang B, Dai D, Yin X, Liang Y, Kou Y, Tan Y, Shen L, Peng Z. | Front Cell Infect Microbiol | 10.3389/fcimb.2023.1099063 | 2023 | |
| Gut-brain-bone marrow axis in hypertension. | Li J, Raizada MK, Richards EM. | Curr Opin Nephrol Hypertens | 10.1097/mnh.0000000000000678 | 2021 | | |
| Young-onset Rectal Cancer: Unique Tumoral Microbiome and Correlation With Response to Neoadjuvant Therapy. | White MG, Damania A, Alshenaifi J, Sahasrabhojane P, Peacock O, Losh J, Wong MC, Lutter-Berkova Z, Chang GJ, Futreal A, Wargo JA, Ajami NJ, Kopetz S, You YN. | Ann Surg | 10.1097/sla.0000000000006015 | 2023 | | |
| Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions. | Gnanasekaran T, Sarathi A, Fang Q, Azarm A, Assis Geraldo J, Nigro E, Arumugam M. | mSystems | 10.1128/msystems.01249-22 | 2023 | | |
| Metabolism | Early-life milk replacer feeding mediates lipid metabolism disorders induced by colonic microbiota and bile acid profiles to reduce body weight in goat model. | Zhang K, Zhang T, Guo M, Cuoji A, Xu Y, Zhao Y, Yang Y, Brugger D, Wang X, Suo L, Wu Y, Chen Y. | J Anim Sci Biotechnol | 10.1186/s40104-024-01072-x | 2024 | |
| Inulin accelerates weight loss in obese mice by regulating gut microbiota and serum metabolites. | Wu Z, Du Z, Tian Y, Liu M, Zhu K, Zhao Y, Wang H. | Front Nutr | 10.3389/fnut.2022.980382 | 2022 | | |
| Phylogeny | Integrated Analysis of the Effects of Cecal Microbiota and Serum Metabolome on Market Weights of Chinese Native Chickens. | Yang S, Yang Y, Long X, Li H, Zhang F, Wang Z. | Animals (Basel) | 10.3390/ani13193034 | 2023 | |
| Fecal and Tissue Microbiota Are Associated with Tumor T-Cell Infiltration and Mesenteric Lymph Node Involvement in Colorectal Cancer. | Luu K, Ye JY, Lagishetty V, Liang F, Hauer M, Sedighian F, Kwaan MR, Kazanjian KK, Hecht JR, Lin AY, Jacobs JP. | Nutrients | 10.3390/nu15020316 | 2023 | | |
| Phylogeny | Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota. | Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN. | Biomedicines | 10.3390/biomedicines12050996 | 2024 | |
| Genetics | Host genotype and exercise exhibit species-level selection for members of the gut bacterial communities in the mouse digestive system. | Dowden RA, McGuinness LR, Wisniewski PJ, Campbell SC, Guers JJ, Oydanich M, Vatner SF, Haggblom MM, Kerkhof LJ. | Sci Rep | 10.1038/s41598-020-65740-4 | 2020 | |
| The intestinal microbiome of inflammatory bowel disease across the pediatric age range. | Conrad MA, Bittinger K, Ren Y, Kachelries K, Vales J, Li H, Wu GD, Bushman FD, Devoto M, Baldassano RN, Kelsen JR. | Gut Microbes | 10.1080/19490976.2024.2317932 | 2024 | | |
| Silibinin-derived microbiota enrich (R)-2,3-dihydroxy-isovalerate and ameliorate colitis via the GAT-3/RARbeta/RORgammat axis. | Yan B, Zheng X, Lu D, Li T, Chen X, Shao Z, Fu T. | ISME J | 10.1093/ismejo/wraf175 | 2025 | | |
| Effects of lactic acid bacteria fermented feed and three types of lactic acid bacteria (L. plantarum, L. acidophilus, B. animalis) on intestinal microbiota and T cell polarization (Th1, Th2, Th17, Treg) in the intestinal lymph nodes and spleens of rats. | Yu DY, Oh SH, Kim IS, Kim GI, Kim JA, Moon YS, Jang JC, Lee SS, Jung JH, Park HC, Cho KK. | Anim Biosci | 10.5713/ab.22.0301 | 2023 | | |
| Consensus molecular subtypes (CMS) in metastatic colorectal cancer - personalized medicine decision. | Rebersek M. | Radiol Oncol | 10.2478/raon-2020-0031 | 2020 | | |
| Xanthohumol Requires the Intestinal Microbiota to Improve Glucose Metabolism in Diet-Induced Obese Mice. | Logan IE, Shulzhenko N, Sharpton TJ, Bobe G, Liu K, Nuss S, Jones ML, Miranda CL, Vasquez-Perez S, Pennington JM, Leonard SW, Choi J, Wu W, Gurung M, Kim JP, Lowry MB, Morgun A, Maier CS, Stevens JF, Gombart AF. | Mol Nutr Food Res | 10.1002/mnfr.202100389 | 2021 | | |
| Pathogenicity | Gut Microbiota Characteristics of People with Obesity by Meta-Analysis of Existing Datasets. | Gong J, Shen Y, Zhang H, Cao M, Guo M, He J, Zhang B, Xiao C. | Nutrients | 10.3390/nu14142993 | 2022 | |
| Evolutionary biologic changes of gut microbiota in an 'adenoma-carcinoma sequence' mouse colorectal cancer model induced by 1, 2-Dimethylhydrazine. | Sun T, Liu S, Zhou Y, Yao Z, Zhang D, Cao S, Wei Z, Tan B, Li Y, Lian Z, Wang S. | Oncotarget | 10.18632/oncotarget.13443 | 2017 | | |
| Genetics | Metagenomics Study Reveals Changes in Gut Microbiota in Centenarians: A Cohort Study of Hainan Centenarians. | Luan Z, Sun G, Huang Y, Yang Y, Yang R, Li C, Wang T, Tan D, Qi S, Jun C, Wang C, Wang S, Zhao Y, Jing Y. | Front Microbiol | 10.3389/fmicb.2020.01474 | 2020 | |
| Pathogenicity | COVID-19 Infection Alters the Microbiome: Elite Athletes and Sedentary Patients Have Similar Bacterial Flora. | Babszky G, Torma F, Aczel D, Bakonyi P, Gombos Z, Feher J, Szabo D, Ligeti B, Pongor S, Balogh L, Posa A, Radak Z. | Genes (Basel) | 10.3390/genes12101577 | 2021 | |
| Biotechnology | The abundance and diversity of antibiotic resistance genes in layer chicken ceca is associated with farm enviroment. | Xiao S, Mi J, Chen Y, Feng K, Mei L, Liao X, Wu Y, Wang Y. | Front Microbiol | 10.3389/fmicb.2023.1177404 | 2023 | |
| Grape polyphenols reduce fasting glucose and increase hyocholic acid in healthy humans: a meta-omics study. | Mezhibovsky E, Wu G, Wu Y, Ning Z, Bacalia K, Sadangi S, Patel R, Poulev A, Duran RM, Macor M, Coyle S, Lam YY, Raskin I, Figeys D, Zhao L, Roopchand DE. | NPJ Sci Food | 10.1038/s41538-025-00443-6 | 2025 | | |
| The gut metagenome harbors metabolic and antibiotic resistance signatures of moderate-to-severe asthma. | Wilson NG, Hernandez-Leyva A, Schwartz DJ, Bacharier LB, Kau AL. | FEMS Microbes | 10.1093/femsmc/xtae010 | 2024 | | |
| Characterization of Microbiota in Children with Chronic Functional Constipation. | de Meij TG, de Groot EF, Eck A, Budding AE, Kneepkens CM, Benninga MA, van Bodegraven AA, Savelkoul PH. | PLoS One | 10.1371/journal.pone.0164731 | 2016 | | |
| Pathogenicity | Heat-Killed Bifidobacterium bifidum B1628 May Alleviate Dextran Sulfate Sodium-Induced Colitis in Mice, and the Anti-Inflammatory Effect Is Associated with Gut Microbiota Modulation. | Feng C, Zhang W, Zhang T, He Q, Kwok LY, Tan Y, Zhang H. | Nutrients | 10.3390/nu14245233 | 2022 | |
| Cinnamic acid regulates the intestinal microbiome and short-chain fatty acids to treat slow transit constipation. | Jiang JG, Luo Q, Li SS, Tan TY, Xiong K, Yang T, Xiao TB. | World J Gastrointest Pharmacol Ther | 10.4292/wjgpt.v14.i2.4 | 2023 | | |
| Novel insights into microbiome in colitis and colorectal cancer. | Yang Y, Jobin C. | Curr Opin Gastroenterol | 10.1097/mog.0000000000000399 | 2017 | | |
| Phylogeny | Compositional alterations of the gut microbiota in acute myocardial infarction patients with type 2 diabetes mellitus. | Lei C, Zhang X, Chen E, Lin L, Zhou Z, Wang Z, Liu T, Liu Z. | Ann Transl Med | 10.21037/atm-22-3521 | 2023 | |
| The Different Ways Multi-Strain Probiotics with Different Ratios of Bifidobacterium and Lactobacillus Relieve Constipation Induced by Loperamide in Mice. | Zhang C, Wang L, Liu X, Wang G, Guo X, Liu X, Zhao J, Chen W. | Nutrients | 10.3390/nu15194230 | 2023 | | |
| Developing whole cell standards for the microbiome field. | Sergaki C, Anwar S, Fritzsche M, Mate R, Francis RJ, MacLellan-Gibson K, Logan A, Amos GCA. | Microbiome | 10.1186/s40168-022-01313-z | 2022 | | |
| RWHMDA: Random Walk on Hypergraph for Microbe-Disease Association Prediction. | Niu YW, Qu CQ, Wang GH, Yan GY. | Front Microbiol | 10.3389/fmicb.2019.01578 | 2019 | | |
| Genetics | When old metagenomic data meet newly sequenced genomes, a case study. | Li X, Naser SA, Khaled A, Hu H, Li X. | PLoS One | 10.1371/journal.pone.0198773 | 2018 | |
| The pediatric gut bacteriome and virome in response to SARS-CoV-2 infection. | Piazzesi A, Pane S, Del Chierico F, Romani L, Campana A, Palma P, Putignani L. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1335450 | 2024 | | |
| Altered Nasal Microbiome in Atrophic Rhinitis: A Novel Theory of Etiopathogenesis and Therapy. | Sarkar S, Magne F, Venugopal G, Purkait S, Mutha NVR, Maiti R, Sharma P, Ramadass B. | Microorganisms | 10.3390/microorganisms10112092 | 2022 | | |
| Genetics | Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes. | Lim JJ, Diener C, Wilson J, Valenzuela JJ, Baliga NS, Gibbons SM. | Nat Commun | 10.1038/s41467-023-41424-1 | 2023 | |
| Multi-omics of the gut microbial ecosystem in patients with microsatellite-instability-high gastrointestinal cancer resistant to immunotherapy. | Cheng S, Han Z, Dai D, Li F, Zhang X, Lu M, Lu Z, Wang X, Zhou J, Li J, Guo X, Song P, Qiu C, Shen W, Zhang Q, Zhu N, Wang X, Tan Y, Kou Y, Yin X, Shen L, Peng Z. | Cell Rep Med | 10.1016/j.xcrm.2023.101355 | 2024 | | |
| Metabolism | Berberine inhibits high fat diet-associated colorectal cancer through modulation of the gut microbiota-mediated lysophosphatidylcholine. | Chen H, Ye C, Wu C, Zhang J, Xu L, Wang X, Xu C, Zhang J, Guo Y, Yao Q. | Int J Biol Sci | 10.7150/ijbs.81824 | 2023 | |
| Altered gut microbiome composition in patients with Vogt-Koyanagi-Harada disease. | Ye Z, Wu C, Zhang N, Du L, Cao Q, Huang X, Tang J, Wang Q, Li F, Zhou C, Xu Q, Xiong X, Kijlstra A, Qin N, Yang P. | Gut Microbes | 10.1080/19490976.2019.1700754 | 2020 | | |
| Pathogenicity | Obesity-associated inflammation countered by a Mediterranean diet: the role of gut-derived metabolites. | Florkowski M, Abiona E, Frank KM, Brichacek AL. | Front Nutr | 10.3389/fnut.2024.1392666 | 2024 | |
| Pathogenicity | Supplementation with paraformic acid in the diet improved intestinal development through modulating intestinal inflammation and microbiota in broiler chickens. | Li J, Liu Y, Niu J, Jing C, Jiao N, Huang L, Jiang S, Yan L, Yang W, Li Y. | Front Microbiol | 10.3389/fmicb.2022.975056 | 2022 | |
| Gut Microbiota Profiles Differ among Individuals Depending on Their Region of Origin: An Italian Pilot Study. | Fontana A, Panebianco C, Picchianti-Diamanti A, Lagana B, Cavalieri D, Potenza A, Pracella R, Binda E, Copetti M, Pazienza V. | Int J Environ Res Public Health | 10.3390/ijerph16214065 | 2019 | | |
| Phylogeny | Diet Quality, Food Groups and Nutrients Associated with the Gut Microbiota in a Nonwestern Population. | Garcia-Vega AS, Corrales-Agudelo V, Reyes A, Escobar JS. | Nutrients | 10.3390/nu12102938 | 2020 | |
| Pathogenicity | Antimicrobial Susceptibility Patterns of Anaerobic Bacterial Clinical Isolates From 2014 to 2016, Including Recently Named or Renamed Species. | Byun JH, Kim M, Lee Y, Lee K, Chong Y. | Ann Lab Med | 10.3343/alm.2019.39.2.190 | 2019 | |
| Changes in the Microbial Composition of the Cecum and Histomorphometric Analysis of Its Epithelium in Broilers Fed with Feed Mixture Containing Fermented Rapeseed Meal. | Szmigiel I, Konkol D, Korczynski M, Lukaszewicz M, Krasowska A. | Microorganisms | 10.3390/microorganisms9020360 | 2021 | | |
| SPARTA: Interpretable functional classification of microbiomes and detection of hidden cumulative effects. | Ruiz B, Belcour A, Blanquart S, Buffet-Bataillon S, Le Huerou-Luron I, Siegel A, Le Cunff Y. | PLoS Comput Biol | 10.1371/journal.pcbi.1012577 | 2024 | | |
| Gastrointestinal microbiota: A predictor of COVID-19 severity? | Neag MA, Vulturar DM, Gherman D, Burlacu CC, Todea DA, Buzoianu AD. | World J Gastroenterol | 10.3748/wjg.v28.i45.6328 | 2022 | | |
| Variability of core microbiota in newly diagnosed treatment-naïve paediatric inflammatory bowel disease patients. | de Meij TGJ, de Groot EFJ, Peeters CFW, de Boer NKH, Kneepkens CMF, Eck A, Benninga MA, Savelkoul PHM, van Bodegraven AA, Budding AE. | PLoS One | 10.1371/journal.pone.0197649 | 2018 | | |
| Intestinal FFA3 mediates obesogenic effects in mice on a Western diet. | Lednovich KR, Nnyamah C, Gough S, Priyadarshini M, Xu K, Wicksteed B, Mishra S, Jain S, Zapater JL, Yadav H, Layden BT. | Am J Physiol Endocrinol Metab | 10.1152/ajpendo.00016.2022 | 2022 | | |
| Insight into gut dysbiosis of patients with inflammatory bowel disease and ischemic colitis. | Dahal RH, Kim S, Kim YK, Kim ES, Kim J. | Front Microbiol | 10.3389/fmicb.2023.1174832 | 2023 | | |
| Bacteroides vulgatus attenuates experimental mice colitis through modulating gut microbiota and immune responses. | Liu L, Xu M, Lan R, Hu D, Li X, Qiao L, Zhang S, Lin X, Yang J, Ren Z, Xu J. | Front Immunol | 10.3389/fimmu.2022.1036196 | 2022 | | |
| Metabolism | Commensal microbes and p53 in cancer progression. | Celardo I, Melino G, Amelio I. | Biol Direct | 10.1186/s13062-020-00281-4 | 2020 | |
| Gut Microbiome Composition Linked to Inflammatory Factors and Cognitive Functions in First-Episode, Drug-Naive Major Depressive Disorder Patients. | Liu P, Gao M, Liu Z, Zhang Y, Tu H, Lei L, Wu P, Zhang A, Yang C, Li G, Sun N, Zhang K. | Front Neurosci | 10.3389/fnins.2021.800764 | 2021 | | |
| Transcriptome | The fecal microbiota of patients with primary biliary cholangitis (PBC) causes PBC-like liver lesions in mice and exacerbates liver damage in a mouse model of PBC. | Jiang H, Yu Y, Hu X, Du B, Shao Y, Wang F, Chen L, Yan R, Li L, Lv L. | Gut Microbes | 10.1080/19490976.2024.2383353 | 2024 | |
| Genetics | Early microbial intervention reshapes phenotypes of newborn Bos taurus through metabolic regulations. | Shen Y, Li Y, Wu T, Dong Q, Deng Q, Liu L, Guo Y, Cao Y, Li Q, Shi J, Zou H, Jiao Y, Ding L, Li J, Gao Y, Hu S, Wang Y, Chen L. | Gigascience | 10.1093/gigascience/giad118 | 2024 | |
| Intravenous ferric carboxymaltose and ferric derisomaltose alter the intestinal microbiome in female iron-deficient anemic mice. | Rieg T, Xue J, Stevens M, Thomas L, White JR, Dominguez Rieg JA. | Biosci Rep | 10.1042/bsr20231217 | 2023 | | |
| Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children. | Bonham KS, Fahur Bottino G, McCann SH, Beauchemin J, Weisse E, Barry F, Cano Lorente R, RESONANCE Consortium, Huttenhower C, Bruchhage M, D'Sa V, Deoni S, Klepac-Ceraj V. | Sci Adv | 10.1126/sciadv.adi0497 | 2023 | | |
| Gut microbiota interact with breast cancer therapeutics to modulate efficacy. | Arnone AA, Ansley K, Heeke AL, Howard-McNatt M, Cook KL. | EMBO Mol Med | 10.1038/s44321-024-00185-0 | 2025 | | |
| Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. | Roodgar M, Good BH, Garud NR, Martis S, Avula M, Zhou W, Lancaster SM, Lee H, Babveyh A, Nesamoney S, Pollard KS, Snyder MP. | Genome Res | 10.1101/gr.265058.120 | 2021 | | |
| Differences in the intestinal microbiome of healthy children and patients with newly diagnosed Crohn's disease. | Kowalska-Duplaga K, Gosiewski T, Kapusta P, Sroka-Oleksiak A, Wedrychowicz A, Pieczarkowski S, Ludwig-Slomczynska AH, Wolkow PP, Fyderek K. | Sci Rep | 10.1038/s41598-019-55290-9 | 2019 | | |
| Metabolism | Dietary cellulose induces anti-inflammatory immunity and transcriptional programs via maturation of the intestinal microbiota. | Fischer F, Romero R, Hellhund A, Linne U, Bertrams W, Pinkenburg O, Eldin HS, Binder K, Jacob R, Walker A, Stecher B, Basic M, Luu M, Mahdavi R, Heintz-Buschart A, Visekruna A, Steinhoff U. | Gut Microbes | 10.1080/19490976.2020.1829962 | 2020 | |
| The Effect of Antibiotics Treatment on the Maternal Immune Response and Gut Microbiome in Pregnant and Non-Pregnant Mice. | Faas MM, Liu Y, Wekema L, Weiss GA, van Loo-Bouwman CA, Silva Lagos L. | Nutrients | 10.3390/nu15122723 | 2023 | | |
| Enzymology | Parallel Evaluation of the MALDI Sepsityper and Verigene BC-GN Assays for Rapid Identification of Gram-Negative Bacilli from Positive Blood Cultures. | Arroyo MA, Denys GA. | J Clin Microbiol | 10.1128/jcm.00692-17 | 2017 | |
| The synergistic effect of herbal medicine and probiotics in pediatric functional constipation: A systematic review and meta-analysis. | Kim E, Chang S, Nam J, Park N, Min SY. | Medicine (Baltimore) | 10.1097/md.0000000000036899 | 2024 | | |
| Meta-analysis reveals obesity associated gut microbial alteration patterns and reproducible contributors of functional shift. | Chanda D, De D. | Gut Microbes | 10.1080/19490976.2024.2304900 | 2024 | | |
| An inhibitory mechanism of AasS, an exogenous fatty acid scavenger: Implications for re-sensitization of FAS II antimicrobials. | Huang H, Chang S, Cui T, Huang M, Qu J, Zhang H, Lu T, Zhang X, Zhou C, Feng Y. | PLoS Pathog | 10.1371/journal.ppat.1012376 | 2024 | | |
| Ginsenoside Rk3 modulates gut microbiota and regulates immune response of group 3 innate lymphoid cells to against colorectal tumorigenesis. | Bai X, Fu R, Liu Y, Deng J, Fei Q, Duan Z, Zhu C, Fan D. | J Pharm Anal | 10.1016/j.jpha.2023.09.010 | 2024 | | |
| Effects of postbiotics on chronic diarrhea in young adults: a randomized, double-blind, placebo-controlled crossover trial assessing clinical symptoms, gut microbiota, and metabolite profiles. | Guo S, Ma T, Kwok LY, Quan K, Li B, Wang H, Zhang H, Menghe B, Chen Y. | Gut Microbes | 10.1080/19490976.2024.2395092 | 2024 | | |
| Effects of Vitamin B2 Supplementation in Broilers Microbiota and Metabolome. | Biagi E, Mengucci C, Barone M, Picone G, Lucchi A, Celi P, Litta G, Candela M, Manfreda G, Brigidi P, Capozzi F, De Cesare A. | Microorganisms | 10.3390/microorganisms8081134 | 2020 | | |
| Proliferative and Invasive Colorectal Tumors in Pet Dogs Provide Unique Insights into Human Colorectal Cancer. | Wang J, Wang T, Sun Y, Feng Y, Kisseberth WC, Henry CJ, Mok I, Lana SE, Dobbin K, Northrup N, Howerth EW, Zhao S. | Cancers (Basel) | 10.3390/cancers10090330 | 2018 | | |
| Correlation between slow transit constipation and spleen deficiency, and gut microbiota: a pilot study. | Zeyue YU, Liyu H, Zongyuan LI, Jianhui S, Hongying C, Hairu H, Xiaoqin LI, Zhongchao S, Hongmei LI. | J Tradit Chin Med | 10.19852/j.cnki.jtcm.20220408.002 | 2022 | | |
| Pglyrp-Regulated Gut Microflora Prevotella falsenii, Parabacteroides distasonis and Bacteroides eggerthii Enhance and Alistipes finegoldii Attenuates Colitis in Mice. | Dziarski R, Park SY, Kashyap DR, Dowd SE, Gupta D. | PLoS One | 10.1371/journal.pone.0146162 | 2016 | | |
| Tetragenococcus halophilus Alleviates Intestinal Inflammation in Mice by Altering Gut Microbiota and Regulating Dendritic Cell Activation via CD83. | Islam SMS, Ryu HM, Sohn S. | Cells | 10.3390/cells11121903 | 2022 | | |
| Phylogeny | Escherichia coli Exopolysaccharides Induced by Ceftriaxone Regulated Human Gut Microbiota in vitro. | Li B, Chen H, Cao L, Hu Y, Chen D, Yin Y. | Front Microbiol | 10.3389/fmicb.2021.634204 | 2021 | |
| Pathogenicity | Comparison of biochemical, microbial and mucosal mRNA expression in bile acid diarrhoea and irritable bowel syndrome with diarrhoea. | Camilleri M, Carlson P, BouSaba J, McKinzie S, Vijayvargiya P, Magnus Y, Sannaa W, Wang XJ, Chedid V, Zheng T, Maselli D, Atieh J, Taylor A, Nair AA, Kengunte Nagaraj N, Johnson S, Chen J, Burton D, Busciglio I. | Gut | 10.1136/gutjnl-2022-327471 | 2023 | |
| Sodium acetate/sodium butyrate alleviates lipopolysaccharide-induced diarrhea in mice via regulating the gut microbiota, inflammatory cytokines, antioxidant levels, and NLRP3/Caspase-1 signaling. | Chen X, Kong Q, Zhao X, Zhao C, Hao P, Irshad I, Lei H, Kulyar MF, Bhutta ZA, Ashfaq H, Sha Q, Li K, Wu Y. | Front Microbiol | 10.3389/fmicb.2022.1036042 | 2022 | | |
| Enzymology | The genome of a Bacteroidetes inhabitant of the human gut encodes a structurally distinct enoyl-acyl carrier protein reductase (FabI). | Radka CD, Frank MW, Yao J, Seetharaman J, Miller DJ, Rock CO. | J Biol Chem | 10.1074/jbc.ra120.013336 | 2020 | |
| Phylogeny | A Comparison Study of Age and Colorectal Cancer-Related Gut Bacteria. | Zhang YK, Zhang Q, Wang YL, Zhang WY, Hu HQ, Wu HY, Sheng XZ, Luo KJ, Zhang H, Wang M, Huang R, Wang GY. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.606490 | 2021 | |
| Pathogenicity | Altered Fecal Microbiota Composition in Older Adults With Frailty. | Xu Y, Wang Y, Li H, Dai Y, Chen D, Wang M, Jiang X, Huang Z, Yu H, Huang J, Xiong Z. | Front Cell Infect Microbiol | 10.3389/fcimb.2021.696186 | 2021 | |
| Enzymatically prepared alginate oligosaccharides improve broiler chicken growth performance by modulating the gut microbiota and growth hormone signals. | Zhu La AT, Feng Y, Hu D, Feng Y, Jin X, Liu D, Guo Y, Cheng G, Hu Y. | J Anim Sci Biotechnol | 10.1186/s40104-023-00887-4 | 2023 | | |
| Phylogeny | Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers. | Dai Z, Coker OO, Nakatsu G, Wu WKK, Zhao L, Chen Z, Chan FKL, Kristiansen K, Sung JJY, Wong SH, Yu J. | Microbiome | 10.1186/s40168-018-0451-2 | 2018 | |
| Metabolomic and gut microbiome profiles across the spectrum of community-based COVID and non-COVID disease. | Osterdahl MF, Whiston R, Sudre CH, Asnicar F, Cheetham NJ, Blanco Miguez A, Bowyer V, Antonelli M, Snell O, Dos Santos Canas L, Hu C, Wolf J, Menni C, Malim M, Hart D, Spector T, Berry S, Segata N, Doores K, Ourselin S, Duncan EL, Steves CJ. | Sci Rep | 10.1038/s41598-023-34598-7 | 2023 | | |
| Metabolism | Gut microbial carbohydrate metabolism contributes to insulin resistance. | Takeuchi T, Kubota T, Nakanishi Y, Tsugawa H, Suda W, Kwon AT, Yazaki J, Ikeda K, Nemoto S, Mochizuki Y, Kitami T, Yugi K, Mizuno Y, Yamamichi N, Yamazaki T, Takamoto I, Kubota N, Kadowaki T, Arner E, Carninci P, Ohara O, Arita M, Hattori M, Koyasu S, Ohno H. | Nature | 10.1038/s41586-023-06466-x | 2023 | |
| Metabolism | Sodium, hypertension, and the gut: does the gut microbiota go salty? | Smiljanec K, Lennon SL. | Am J Physiol Heart Circ Physiol | 10.1152/ajpheart.00312.2019 | 2019 | |
| Integrative multiomics analysis reveals host-microbe-metabolite interplays associated with the aging process in Singaporeans. | Chen L, Zheng T, Yang Y, Chaudhary PP, Teh JPY, Cheon BK, Moses D, Schuster SC, Schlundt J, Li J, Conway PL. | Gut Microbes | 10.1080/19490976.2022.2070392 | 2022 | | |
| Familial adenomatous polyposis and changes in the gut microbiota: New insights into colorectal cancer carcinogenesis. | Biondi A, Basile F, Vacante M. | World J Gastrointest Oncol | 10.4251/wjgo.v13.i6.495 | 2021 | | |
| Influence of grape consumption on the human microbiome. | Dave A, Beyoglu D, Park EJ, Idle JR, Pezzuto JM. | Sci Rep | 10.1038/s41598-023-34813-5 | 2023 | | |
| Transferable Immunoglobulin A-Coated Odoribacter splanchnicus in Responders to Fecal Microbiota Transplantation for Ulcerative Colitis Limits Colonic Inflammation. | Lima SF, Gogokhia L, Viladomiu M, Chou L, Putzel G, Jin WB, Pires S, Guo CJ, Gerardin Y, Crawford CV, Jacob V, Scherl E, Brown SE, Hambor J, Longman RS. | Gastroenterology | 10.1053/j.gastro.2021.09.061 | 2022 | | |
| Zunyimycin C enhances immunity and improves cognitive impairment and its mechanism. | Wang X, Li Z, Sun R, Li X, Guo R, Cui X, Liu B, Li W, Yang Y, Huang X, Qu H, Liu C, Wang Z, Lu Y, Yue C. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.1081243 | 2022 | | |
| Fecal Enterotoxigenic Bacteroides fragilis-Peptostreptococcus stomatis-Parvimonas micra Biomarker for Noninvasive Diagnosis and Prognosis of Colorectal Laterally Spreading Tumor. | Shen X, Li J, Li J, Zhang Y, Li X, Cui Y, Gao Q, Chen X, Chen Y, Fang JY. | Front Oncol | 10.3389/fonc.2021.661048 | 2021 | | |
| Gut microbiome and its role in colorectal cancer. | Rebersek M. | BMC Cancer | 10.1186/s12885-021-09054-2 | 2021 | | |
| Differences in Gut Microbiome in Hospitalized Immunocompetent vs. Immunocompromised Children, Including Those With Sickle Cell Disease. | Mohandas S, Soma VL, Tran TDB, Sodergren E, Ambooken T, Goldman DL, Weinstock G, Herold BC. | Front Pediatr | 10.3389/fped.2020.583446 | 2020 | | |
| Longevity-Associated Core Gut Microbiota Mining and Effect of Mediated Probiotic Combinations on Aging Mice: Case Study of a Long-Lived Population in Guangxi, China. | Li RD, Zheng WX, Zhang QR, Song Y, Liao YT, Shi FC, Wei XH, Zhou F, Zheng XH, Tan KY, Li QY. | Nutrients | 10.3390/nu15071609 | 2023 | | |
| Pathogenicity | In vitro interactions of Alternaria mycotoxins, an emerging class of food contaminants, with the gut microbiota: a bidirectional relationship. | Crudo F, Aichinger G, Mihajlovic J, Varga E, Dellafiora L, Warth B, Dall'Asta C, Berry D, Marko D. | Arch Toxicol | 10.1007/s00204-021-03043-x | 2021 | |
| Phylogeny | Screening of Microbes Associated With Swine Growth and Fat Deposition Traits Across the Intestinal Tract. | Tang S, Xin Y, Ma Y, Xu X, Zhao S, Cao J. | Front Microbiol | 10.3389/fmicb.2020.586776 | 2020 | |
| Effects of Oral Glutamine Supplementation, Birthweight and Age on Colonic Morphology and Microbiome Development in Male Suckling Piglets. | Schulze Holthausen J, Schregel J, Sciascia QL, Li Z, Tuchscherer A, Vahjen W, Metges CC, Zentek J. | Microorganisms | 10.3390/microorganisms10101899 | 2022 | | |
| Composition of fecal microbiota in low-set rectal cancer patients treated with FOLFOX. | Li J, Li J, Lyu N, Ma Y, Liu F, Feng Y, Yao L, Hou Z, Song X, Zhao H, Li X, Wang Y, Xiao C, Zhu B. | Ther Adv Chronic Dis | 10.1177/2040622320904293 | 2020 | | |
| Antibiotic Exposure Aggravates Bacteroides-Linked Uremic Toxicity in the Gut-Kidney Axis. | Ray N, Jeong H, Kwon D, Kim J, Moon Y. | Front Immunol | 10.3389/fimmu.2022.737536 | 2022 | | |
| Pathogenicity | Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling. | d'Hennezel E, Abubucker S, Murphy LO, Cullen TW. | mSystems | 10.1128/msystems.00046-17 | 2017 | |
| Nav1.8-expressing neurons control daily oscillations of food intake, body weight and gut microbiota in mice. | Bullich-Vilarrubias C, Romani-Perez M, Lopez-Almela I, Rubio T, Garcia CJ, Tomas-Barberan FA, Sanz Y. | Commun Biol | 10.1038/s42003-024-05905-3 | 2024 | | |
| Distinct colon mucosa microbiomes associated with tubular adenomas and serrated polyps. | Avelar-Barragan J, DeDecker L, Lu ZN, Coppedge B, Karnes WE, Whiteson KL. | NPJ Biofilms Microbiomes | 10.1038/s41522-022-00328-6 | 2022 | | |
| Age-dependent changes in the gut microbiota and serum metabolome correlate with renal function and human aging. | Sun L, Li Z, Hu C, Ding J, Zhou Q, Pang G, Wu Z, Yang R, Li S, Li J, Cai J, Sun Y, Li R, Zhen H, Sun S, Zhang J, Fang M, Chen Z, Lv Y, Cao Q, Sun Y, Gong R, Huang Z, Duan Y, Liu H, Dong J, Li J, Ruan J, Lu H, He B, Li N, Li T, Xue W, Li Y, Shen J, Yang F, Zhao C, Liang Q, Zhang M, Chen C, Gong H, Hou Y, Wang J, Zhang Y, Yang H, Zhu S, Xiao L, Jin Z, Guo H, Zhao P, Brix S, Xu X, Jia H, Kristiansen K, Yang Z, Nie C. | Aging Cell | 10.1111/acel.14028 | 2023 | | |
| Human Fecal Microbiota Transplantation Reduces the Susceptibility to Dextran Sulfate Sodium-Induced Germ-Free Mouse Colitis. | Yang Y, Zheng X, Wang Y, Tan X, Zou H, Feng S, Zhang H, Zhang Z, He J, Cui B, Zhang X, Wu Z, Dong M, Cheng W, Tao S, Wei H. | Front Immunol | 10.3389/fimmu.2022.836542 | 2022 | | |
| Fermented Maillard Reaction Products by Lactobacillus gasseri 4M13 Alters the Intestinal Microbiota and Improves Dysfunction in Type 2 Diabetic Mice with Colitis. | Jeong YJ, Park HY, Nam HK, Lee KW. | Pharmaceuticals (Basel) | 10.3390/ph14040299 | 2021 | | |
| Disrupted Circadian Rest-Activity Cycles in Inflammatory Bowel Disease Are Associated With Aggressive Disease Phenotype, Subclinical Inflammation, and Dysbiosis. | Swanson GR, Kochman N, Amin J, Chouhan V, Yim W, Engen PA, Shaikh M, Naqib A, Tran L, Voigt RM, Forsyth CB, Green SJ, Keshavarzian A. | Front Med (Lausanne) | 10.3389/fmed.2021.770491 | 2021 | | |
| Pathogenicity | Barley Leaf Insoluble Dietary Fiber Alleviated Dextran Sulfate Sodium-Induced Mice Colitis by Modulating Gut Microbiota. | Tian M, Li D, Ma C, Feng Y, Hu X, Chen F. | Nutrients | 10.3390/nu13030846 | 2021 | |
| Pathogenicity | Tipping the Balance: Vitamin D Inadequacy in Children Impacts the Major Gut Bacterial Phyla. | Singh P, Rawat A, Saadaoui M, Elhag D, Tomei S, Elanbari M, Akobeng AK, Mustafa A, Abdelgadir I, Udassi S, Hendaus MA, Al Khodor S. | Biomedicines | 10.3390/biomedicines10020278 | 2022 | |
| Case Report: The effect of intravenous and oral antibiotics on the gut microbiome and breath volatile organic compounds over one year. | Shahi F, Forrester S, Redeker K, Chong JPJ, Barlow G. | Wellcome Open Res | 10.12688/wellcomeopenres.17450.3 | 2022 | | |
| Species- and strain-level assessment using rrn long-amplicons suggests donor's influence on gut microbial transference via fecal transplants in metabolic syndrome subjects. | Benitez-Paez A, Hartstra AV, Nieuwdorp M, Sanz Y. | Gut Microbes | 10.1080/19490976.2022.2078621 | 2022 | | |
| PM2RA: A Framework for Detecting and Quantifying Relationship Alterations in Microbial Community. | Liu Z, Mi K, Xu ZZ, Zhang Q, Liu X. | Genomics Proteomics Bioinformatics | 10.1016/j.gpb.2020.07.005 | 2021 | | |
| Gut bacterial dysbiosis and instability is associated with the onset of complications and mortality in COVID-19. | Schult D, Reitmeier S, Koyumdzhieva P, Lahmer T, Middelhoff M, Erber J, Schneider J, Kager J, Frolova M, Horstmann J, Fricke L, Steiger K, Jesinghaus M, Janssen KP, Protzer U, Neuhaus K, Schmid RM, Haller D, Quante M. | Gut Microbes | 10.1080/19490976.2022.2031840 | 2022 | | |
| Unraveling Heterogeneity of Coral Microbiome Assemblages in Tropical and Subtropical Corals in the South China Sea. | Gong S, Jin X, Ren L, Tan Y, Xia X. | Microorganisms | 10.3390/microorganisms8040604 | 2020 | | |
| Genetics | Species-Level Analysis of the Human Gut Microbiome Shows Antibiotic Resistance Genes Associated With Colorectal Cancer. | Liu C, Li Z, Ding J, Zhen H, Fang M, Nie C. | Front Microbiol | 10.3389/fmicb.2021.765291 | 2021 | |
| Identification and Analysis of Human Microbe-Disease Associations by Matrix Decomposition and Label Propagation. | Qu J, Zhao Y, Yin J. | Front Microbiol | 10.3389/fmicb.2019.00291 | 2019 | | |
| Pathogenicity | Lingguizhugan decoction attenuates diet-induced obesity and hepatosteatosis via gut microbiota. | Liu MT, Huang YJ, Zhang TY, Tan LB, Lu XF, Qin J. | World J Gastroenterol | 10.3748/wjg.v25.i27.3590 | 2019 | |
| Genetics | Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics. | Basile A, Heinken A, Hertel J, Smarr L, Li W, Treu L, Valle G, Campanaro S, Thiele I. | Gut Microbes | 10.1080/19490976.2023.2226921 | 2023 | |
| Pathogenicity | Bile acid-receptor TGR5 deficiency worsens liver injury in alcohol-fed mice by inducing intestinal microbiota dysbiosis. | Spatz M, Ciocan D, Merlen G, Rainteau D, Humbert L, Gomes-Rochette N, Hugot C, Trainel N, Mercier-Nome F, Domenichini S, Puchois V, Wrzosek L, Ferrere G, Tordjmann T, Perlemuter G, Cassard AM. | JHEP Rep | 10.1016/j.jhepr.2021.100230 | 2021 | |
| Microbiome in Cancer Development and Treatment. | Ciernikova S, Sevcikova A, Mladosievicova B, Mego M. | Microorganisms | 10.3390/microorganisms12010024 | 2023 | | |
| Effects of Fecal Microbiome Transfer in Adolescents With Obesity: The Gut Bugs Randomized Controlled Trial. | Leong KSW, Jayasinghe TN, Wilson BC, Derraik JGB, Albert BB, Chiavaroli V, Svirskis DM, Beck KL, Conlon CA, Jiang Y, Schierding W, Vatanen T, Holland DJ, O'Sullivan JM, Cutfield WS. | JAMA Netw Open | 10.1001/jamanetworkopen.2020.30415 | 2020 | | |
| A Natural Polyphenol Exerts Antitumor Activity and Circumvents Anti-PD-1 Resistance through Effects on the Gut Microbiota. | Messaoudene M, Pidgeon R, Richard C, Ponce M, Diop K, Benlaifaoui M, Nolin-Lapalme A, Cauchois F, Malo J, Belkaid W, Isnard S, Fradet Y, Dridi L, Velin D, Oster P, Raoult D, Ghiringhelli F, Boidot R, Chevrier S, Kysela DT, Brun YV, Falcone EL, Pilon G, Onate FP, Gitton-Quent O, Le Chatelier E, Durand S, Kroemer G, Elkrief A, Marette A, Castagner B, Routy B. | Cancer Discov | 10.1158/2159-8290.cd-21-0808 | 2022 | | |
| Novel biomarkers used for early diagnosis and tyrosine kinase inhibitors as targeted therapies in colorectal cancer. | Jiang H, Zhou S, Li G. | Front Pharmacol | 10.3389/fphar.2023.1189799 | 2023 | | |
| Long-Term Grow-Out Affects Campylobacter jejuni Colonization Fitness in Coincidence With Altered Microbiota and Lipid Composition in the Cecum of Laying Hens. | Asakura H, Nakayama T, Yamamoto S, Izawa K, Kawase J, Torii Y, Murakami S. | Front Vet Sci | 10.3389/fvets.2021.675570 | 2021 | | |
| Impact of Probiotics on the Prevention and Treatment of Gastrointestinal Diseases in the Pediatric Population. | Garcia-Santos JA, Nieto-Ruiz A, Garcia-Ricobaraza M, Cerdo T, Campoy C. | Int J Mol Sci | 10.3390/ijms24119427 | 2023 | | |
| Spatial Variation of the Gut Microbiota in Broiler Chickens as Affected by Dietary Available Phosphorus and Assessed by T-RFLP Analysis and 454 Pyrosequencing. | Witzig M, Carminha-Silva A, Green-Engert R, Hoelzle K, Zeller E, Seifert J, Hoelzle LE, Rodehutscord M. | PLoS One | 10.1371/journal.pone.0143442 | 2015 | | |
| Pathogenicity | Potential Probiotic or Trigger of Gut Inflammation - The Janus-Faced Nature of Cannabidiol-Rich Cannabis Extract. | Skinner CM, Nookaew I, Ewing LE, Wongsurawat T, Jenjaroenpun P, Quick CM, Yee EU, Piccolo BD, ElSohly M, Walker LA, Gurley B, Koturbash I. | J Diet Suppl | 10.1080/19390211.2020.1761506 | 2020 | |
| Versatile Triad Alliance: Bile Acid, Taurine and Microbiota. | Duszka K. | Cells | 10.3390/cells11152337 | 2022 | | |
| Enhanced metagenomic deep learning for disease prediction and consistent signature recognition by restructured microbiome 2D representations. | Shen WX, Liang SR, Jiang YY, Chen YZ. | Patterns (N Y) | 10.1016/j.patter.2022.100658 | 2023 | | |
| Exome and Tissue-Associated Microbiota as Predictive Markers of Response to Neoadjuvant Treatment in Locally Advanced Rectal Cancer. | Takenaka IKTM, Bartelli TF, Defelicibus A, Sendoya JM, Golubicki M, Robbio J, Serpa MS, Branco GP, Santos LBC, Claro LCL, Dos Santos GO, Kupper BEC, da Silva IT, Llera AS, de Mello CAL, Riechelmann RP, Dias-Neto E, Iseas S, Aguiar S, Nunes DN. | Front Oncol | 10.3389/fonc.2022.809441 | 2022 | | |
| Phylogeny | Identification and characterization of potential performance-related gut microbiotas in broiler chickens across various feeding trials. | Torok VA, Hughes RJ, Mikkelsen LL, Perez-Maldonado R, Balding K, MacAlpine R, Percy NJ, Ophel-Keller K. | Appl Environ Microbiol | 10.1128/aem.00165-11 | 2011 | |
| Pathogenicity | Effects of sex and chronic cigarette smoke exposure on the mouse cecal microbiome. | Tam A, Filho FSL, Ra SW, Yang J, Leung JM, Churg A, Wright JL, Sin DD. | PLoS One | 10.1371/journal.pone.0230932 | 2020 | |
| Metabolism | Influence of Vitamin D Deficiency on Inflammatory Markers and Clinical Disease Activity in IBD Patients. | Lopez-Munoz P, Beltran B, Saez-Gonzalez E, Alba A, Nos P, Iborra M. | Nutrients | 10.3390/nu11051059 | 2019 | |
| Systematic review: probiotics for functional constipation in children. | Wojtyniak K, Szajewska H. | Eur J Pediatr | 10.1007/s00431-017-2972-2 | 2017 | | |
| Integrated analysis of the faecal metagenome and serum metabolome reveals the role of gut microbiome-associated metabolites in the detection of colorectal cancer and adenoma. | Chen F, Dai X, Zhou CC, Li KX, Zhang YJ, Lou XY, Zhu YM, Sun YL, Peng BX, Cui W. | Gut | 10.1136/gutjnl-2020-323476 | 2022 | | |
| The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries. | Young C, Wood HM, Seshadri RA, Van Nang P, Vaccaro C, Melendez LC, Bose M, Van Doi M, Pinero TA, Valladares CT, Arguero J, Balaguer AF, Thompson KN, Yan Y, Huttenhower C, Quirke P. | Genome Med | 10.1186/s13073-021-00844-8 | 2021 | | |
| Genetics | Exploratory Analysis of the Microbiological Potential for Efficient Utilization of Fiber Between Lantang and Duroc Pigs. | Cheng P, Wang Y, Liang J, Wu Y, Wright A, Liao X. | Front Microbiol | 10.3389/fmicb.2018.01342 | 2018 | |
| Phylogeny | Host immunoglobulin G selectively identifies pathobionts in pediatric inflammatory bowel diseases. | Armstrong H, Alipour M, Valcheva R, Bording-Jorgensen M, Jovel J, Zaidi D, Shah P, Lou Y, Ebeling C, Mason AL, Lafleur D, Jerasi J, Wong GK, Madsen K, Carroll MW, Huynh HQ, Dieleman LA, Wine E. | Microbiome | 10.1186/s40168-018-0604-3 | 2019 | |
| Enzymology | Modulation of faecal metagenome in Crohn's disease: Role of microRNAs as biomarkers. | Rojas-Feria M, Romero-Garcia T, Fernandez Caballero-Rico JA, Pastor Ramirez H, Aviles-Recio M, Castro-Fernandez M, Chueca Porcuna N, Romero-Gomez M, Garcia F, Grande L, Del Campo JA. | World J Gastroenterol | 10.3748/wjg.v24.i46.5223 | 2018 | |
| DeepMicrobes: taxonomic classification for metagenomics with deep learning. | Liang Q, Bible PW, Liu Y, Zou B, Wei L. | NAR Genom Bioinform | 10.1093/nargab/lqaa009 | 2020 | | |
| Glycan Biosynthesis Ability of Gut Microbiota Increased in Primary Hypertension Patients Taking Antihypertension Medications and Potentially Promoted by Macrophage-Adenosine Monophosphate-Activated Protein Kinase. | Zheng S, Piao C, Liu Y, Liu X, Liu T, Zhang X, Ren J, Liu Y, Zhu B, Du J. | Front Microbiol | 10.3389/fmicb.2021.719599 | 2021 | | |
| Phylogeny | Intestinal microbiome disruption in patients in a long-term acute care hospital: A case for development of microbiome disruption indices to improve infection prevention. | Halpin AL, de Man TJ, Kraft CS, Perry KA, Chan AW, Lieu S, Mikell J, Limbago BM, McDonald LC. | Am J Infect Control | 10.1016/j.ajic.2016.01.003 | 2016 | |
| Genetics | Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis. | Zeybel M, Arif M, Li X, Altay O, Yang H, Shi M, Akyildiz M, Saglam B, Gonenli MG, Yigit B, Ulukan B, Ural D, Shoaie S, Turkez H, Nielsen J, Zhang C, Uhlen M, Boren J, Mardinoglu A. | Adv Sci (Weinh) | 10.1002/advs.202104373 | 2022 | |
| The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice. | Fan Y, Stoving RK, Berreira Ibraim S, Hyotylainen T, Thirion F, Arora T, Lyu L, Stankevic E, Hansen TH, Dechelotte P, Sinioja T, Ragnarsdottir O, Pons N, Galleron N, Quinquis B, Levenez F, Roume H, Falony G, Vieira-Silva S, Raes J, Clausen L, Telleus GK, Backhed F, Oresic M, Ehrlich SD, Pedersen O. | Nat Microbiol | 10.1038/s41564-023-01355-5 | 2023 | | |
| Metabolite-based dietary supplementation in human type 1 diabetes is associated with microbiota and immune modulation. | Bell KJ, Saad S, Tillett BJ, McGuire HM, Bordbar S, Yap YA, Nguyen LT, Wilkins MR, Corley S, Brodie S, Duong S, Wright CJ, Twigg S, de St Groth BF, Harrison LC, Mackay CR, Gurzov EN, Hamilton-Williams EE, Marino E. | Microbiome | 10.1186/s40168-021-01193-9 | 2022 | | |
| Cross-Regional View of Functional and Taxonomic Microbiota Composition in Obesity and Post-obesity Treatment Shows Country Specific Microbial Contribution. | Medina DA, Li T, Thomson P, Artacho A, Perez-Brocal V, Moya A. | Front Microbiol | 10.3389/fmicb.2019.02346 | 2019 | | |
| Disordered development of gut microbiome interferes with the establishment of the gut ecosystem during early childhood with atopic dermatitis. | Lee MJ, Park YM, Kim B, Tae IH, Kim NE, Pranata M, Kim T, Won S, Kang NJ, Lee YK, Lee DW, Nam MH, Hong SJ, Kim BS. | Gut Microbes | 10.1080/19490976.2022.2068366 | 2022 | | |
| Characterization of the gut DNA and RNA Viromes in a Cohort of Chinese Residents and Visiting Pakistanis. | Yan Q, Wang Y, Chen X, Jin H, Wang G, Guan K, Zhang Y, Zhang P, Ayaz T, Liang Y, Wang J, Cui G, Sun Y, Xiao M, Kang J, Zhang W, Zhang A, Li P, Liu X, Ulllah H, Ma Y, Li S, Ma T. | Virus Evol | 10.1093/ve/veab022 | 2021 | | |
| Enzymology | Fecal microbiota composition associates with the capacity of human peripheral blood monocytes to differentiate into immunogenic dendritic cells in vitro. | Radojevic D, Tomic S, Mihajlovic D, Tolinacki M, Pavlovic B, Vucevic D, Bojic S, Golic N, Colic M, Dokic J. | Gut Microbes | 10.1080/19490976.2021.1921927 | 2021 | |
| T cell epitope mimicry between Sjögren's syndrome Antigen A (SSA)/Ro60 and oral, gut, skin and vaginal bacteria. | Szymula A, Rosenthal J, Szczerba BM, Bagavant H, Fu SM, Deshmukh US. | Clin Immunol | 10.1016/j.clim.2014.02.004 | 2014 | | |
| Enzymology | Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet. | Roager HM, Licht TR, Poulsen SK, Larsen TM, Bahl MI. | Appl Environ Microbiol | 10.1128/aem.03549-13 | 2014 | |
| Enzymology | The Performance of the Four Anaerobic Blood Culture Bottles BacT/ALERT-FN, -FN Plus, BACTEC-Plus and -Lytic in Detection of Anaerobic Bacteria and Identification by Direct MALDI-TOF MS. | Almuhayawi M, Altun O, Abdulmajeed AD, Ullberg M, Ozenci V. | PLoS One | 10.1371/journal.pone.0142398 | 2015 | |
| The human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass. | Debedat J, Le Roy T, Voland L, Belda E, Alili R, Adriouch S, Bel Lassen P, Kasahara K, Hutchison E, Genser L, Torres L, Gamblin C, Rouault C, Zucker JD, Kapel N, Poitou C, Marcelin G, Rey FE, Aron-Wisnewsky J, Clement K. | Gut Microbes | 10.1080/19490976.2022.2050635 | 2022 | | |
| Pathogenicity | Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention study. | Bryrup T, Thomsen CW, Kern T, Allin KH, Brandslund I, Jorgensen NR, Vestergaard H, Hansen T, Hansen TH, Pedersen O, Nielsen T. | Diabetologia | 10.1007/s00125-019-4848-7 | 2019 | |
| Pathogenicity | TLR4 May Be Involved in the Regulation of Colonic Mucosal Microbiota by Vitamin A. | Xiao L, Chen B, Feng D, Yang T, Li T, Chen J. | Front Microbiol | 10.3389/fmicb.2019.00268 | 2019 | |
| Metabolism | Discovery of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine phosphorylase involved in the metabolism of N-glycans. | Nihira T, Suzuki E, Kitaoka M, Nishimoto M, Ohtsubo K, Nakai H. | J Biol Chem | 10.1074/jbc.m113.469080 | 2013 | |
| Phylogeny | Opportunistic detection of Fusobacterium nucleatum as a marker for the early gut microbial dysbiosis. | Huh JW, Roh TY. | BMC Microbiol | 10.1186/s12866-020-01887-4 | 2020 | |
| Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study. | Leonard MM, Valitutti F, Karathia H, Pujolassos M, Kenyon V, Fanelli B, Troisi J, Subramanian P, Camhi S, Colucci A, Serena G, Cucchiara S, Trovato CM, Malamisura B, Francavilla R, Elli L, Hasan NA, Zomorrodi AR, Colwell R, Fasano A, CD-GEMM Team. | Proc Natl Acad Sci U S A | 10.1073/pnas.2020322118 | 2021 | | |
| Metabolism | Mucins, gut microbiota, and postbiotics role in colorectal cancer. | Pothuraju R, Chaudhary S, Rachagani S, Kaur S, Roy HK, Bouvet M, Batra SK. | Gut Microbes | 10.1080/19490976.2021.1974795 | 2021 | |
| Higher Fecal Short-Chain Fatty Acid Levels Are Associated with Gut Microbiome Dysbiosis, Obesity, Hypertension and Cardiometabolic Disease Risk Factors. | de la Cuesta-Zuluaga J, Mueller NT, Alvarez-Quintero R, Velasquez-Mejia EP, Sierra JA, Corrales-Agudelo V, Carmona JA, Abad JM, Escobar JS. | Nutrients | 10.3390/nu11010051 | 2018 | | |
| Phylogeny | Ecology impacts the decrease of Spirochaetes and Prevotella in the fecal gut microbiota of urban humans. | Thingholm LB, Bang C, Ruhlemann MC, Starke A, Sicks F, Kaspari V, Jandowsky A, Frolich K, Ismer G, Bernhard A, Bombis C, Struve B, Rausch P, Franke A. | BMC Microbiol | 10.1186/s12866-021-02337-5 | 2021 | |
| Crohn's Disease Differentially Affects Region-Specific Composition and Aerotolerance Profiles of Mucosally Adherent Bacteria. | Shahir NM, Wang JR, Wolber EA, Schaner MS, Frank DN, Ir D, Robertson CE, Chaumont N, Sadiq TS, Koruda MJ, Rahbar R, Nix BD, Newberry RD, Sartor RB, Sheikh SZ, Furey TS. | Inflamm Bowel Dis | 10.1093/ibd/izaa103 | 2020 | | |
| Genetics | Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection. | Stewart DB, Wright JR, Fowler M, McLimans CJ, Tokarev V, Amaniera I, Baker O, Wong HT, Brabec J, Drucker R, Lamendella R. | mSphere | 10.1128/msphere.00454-19 | 2019 | |
| Model of personalized postprandial glycemic response to food developed for an Israeli cohort predicts responses in Midwestern American individuals. | Mendes-Soares H, Raveh-Sadka T, Azulay S, Ben-Shlomo Y, Cohen Y, Ofek T, Stevens J, Bachrach D, Kashyap P, Segal L, Nelson H. | Am J Clin Nutr | 10.1093/ajcn/nqz028 | 2019 | | |
| Metabolism | Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome. | Armstrong Z, Mewis K, Liu F, Morgan-Lang C, Scofield M, Durno E, Chen HM, Mehr K, Withers SG, Hallam SJ. | ISME J | 10.1038/s41396-018-0215-9 | 2018 | |
| The role of gut microbiota in cancer treatment: friend or foe? | Cheng WY, Wu CY, Yu J. | Gut | 10.1136/gutjnl-2020-321153 | 2020 | | |
| Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome. | Huang S, Jiang S, Huo D, Allaband C, Estaki M, Cantu V, Belda-Ferre P, Vazquez-Baeza Y, Zhu Q, Ma C, Li C, Zarrinpar A, Liu YY, Knight R, Zhang J. | Microbiome | 10.1186/s40168-021-01102-0 | 2021 | | |
| Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria. | Zenner C, Hitch TCA, Riedel T, Wortmann E, Tiede S, Buhl EM, Abt B, Neuhaus K, Velge P, Overmann J, Kaspers B, Clavel T. | mSystems | 10.1128/msystems.01300-20 | 2021 | | |
| Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples. | Tarallo S, Ferrero G, Gallo G, Francavilla A, Clerico G, Realis Luc A, Manghi P, Thomas AM, Vineis P, Segata N, Pardini B, Naccarati A, Cordero F. | mSystems | 10.1128/msystems.00289-19 | 2019 | | |
| Sexual Dimorphism of Gut Microbiota Dictates Therapeutics Efficacy of Radiation Injuries. | Cui M, Xiao H, Li Y, Zhang S, Dong J, Wang B, Zhu C, Jiang M, Zhu T, He J, Wang H, Fan S. | Adv Sci (Weinh) | 10.1002/advs.201901048 | 2019 | | |
| Pathogenicity | Lentinula edodes-derived polysaccharide alters the spatial structure of gut microbiota in mice. | Xu X, Zhang X. | PLoS One | 10.1371/journal.pone.0115037 | 2015 | |
| Aryl Hydrocarbon Receptor Deficiency in Intestinal Epithelial Cells Aggravates Alcohol-Related Liver Disease. | Qian M, Liu J, Zhao D, Cai P, Pan C, Jia W, Gao Y, Zhang Y, Zhang N, Zhang Y, Zhang Q, Wu D, Shan C, Zhang M, Schnabl B, Yang S, Shen X, Wang L. | Cell Mol Gastroenterol Hepatol | 10.1016/j.jcmgh.2021.08.014 | 2022 | | |
| Genetics | The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing. | Rodriguez RM, Hernandez BY, Menor M, Deng Y, Khadka VS. | Comput Struct Biotechnol J | 10.1016/j.csbj.2020.03.003 | 2020 | |
| Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases. | Ianiro G, Puncochar M, Karcher N, Porcari S, Armanini F, Asnicar F, Beghini F, Blanco-Miguez A, Cumbo F, Manghi P, Pinto F, Pinto F, Masucci L, Quaranta G, De Giorgi S, Sciume GD, Bibbo S, Del Chierico F, Putignani L, Sanguinetti M, Gasbarrini A, Valles-Colomer M, Cammarota G, Segata N. | Nat Med | 10.1038/s41591-022-01964-3 | 2022 | | |
| Metabolism | Imbalance of gut microbiome and intestinal epithelial barrier dysfunction in patients with high blood pressure. | Kim S, Goel R, Kumar A, Qi Y, Lobaton G, Hosaka K, Mohammed M, Handberg EM, Richards EM, Pepine CJ, Raizada MK. | Clin Sci (Lond) | 10.1042/cs20180087 | 2018 | |
| Role of Gut Microbiota and Probiotics in Colorectal Cancer: Onset and Progression. | Torres-Maravilla E, Boucard AS, Mohseni AH, Taghinezhad-S S, Cortes-Perez NG, Bermudez-Humaran LG. | Microorganisms | 10.3390/microorganisms9051021 | 2021 | | |
| Phylogeny | Molecular studies neglect apparently gram-negative populations in the human gut microbiota. | Hugon P, Lagier JC, Robert C, Lepolard C, Papazian L, Musso D, Vialettes B, Raoult D. | J Clin Microbiol | 10.1128/jcm.00473-13 | 2013 | |
| Effect of antimicrobial growth promoter administration on the intestinal microbiota of beef cattle. | Reti KL, Thomas MC, Yanke LJ, Selinger LB, Inglis GD. | Gut Pathog | 10.1186/1757-4749-5-8 | 2013 | | |
| Mucosal Barrier Depletion and Loss of Bacterial Diversity are Primary Abnormalities in Paediatric Ulcerative Colitis. | Alipour M, Zaidi D, Valcheva R, Jovel J, Martinez I, Sergi C, Walter J, Mason AL, Wong GK, Dieleman LA, Carroll MW, Huynh HQ, Wine E. | J Crohns Colitis | 10.1093/ecco-jcc/jjv223 | 2016 | | |
| Metabolism | Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis. | Meisel M, Mayassi T, Fehlner-Peach H, Koval JC, O'Brien SL, Hinterleitner R, Lesko K, Kim S, Bouziat R, Chen L, Weber CR, Mazmanian SK, Jabri B, Antonopoulos DA. | ISME J | 10.1038/ismej.2016.114 | 2017 | |
| Metagenomic profiling of known and unknown microbes with microbeGPS. | Lindner MS, Renard BY. | PLoS One | 10.1371/journal.pone.0117711 | 2015 | | |
| Metabolism | Gut Microbiome Dysbiosis and Immunometabolism: New Frontiers for Treatment of Metabolic Diseases. | Belizario JE, Faintuch J, Garay-Malpartida M. | Mediators Inflamm | 10.1155/2018/2037838 | 2018 | |
| Multiple conversion between the genes encoding bacterial class-I release factors. | Ishikawa SA, Kamikawa R, Inagaki Y. | Sci Rep | 10.1038/srep12406 | 2015 | | |
| Metabolism | NLRP12 attenuates colon inflammation by maintaining colonic microbial diversity and promoting protective commensal bacterial growth. | Chen L, Wilson JE, Koenigsknecht MJ, Chou WC, Montgomery SA, Truax AD, Brickey WJ, Packey CD, Maharshak N, Matsushima GK, Plevy SE, Young VB, Sartor RB, Ting JP. | Nat Immunol | 10.1038/ni.3690 | 2017 | |
| Intestinal microbiota composition of interleukin-10 deficient C57BL/6J mice and susceptibility to Helicobacter hepaticus-induced colitis. | Yang I, Eibach D, Kops F, Brenneke B, Woltemate S, Schulze J, Bleich A, Gruber AD, Muthupalani S, Fox JG, Josenhans C, Suerbaum S. | PLoS One | 10.1371/journal.pone.0070783 | 2013 | | |
| Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice. | Sharon G, Cruz NJ, Kang DW, Gandal MJ, Wang B, Kim YM, Zink EM, Casey CP, Taylor BC, Lane CJ, Bramer LM, Isern NG, Hoyt DW, Noecker C, Sweredoski MJ, Moradian A, Borenstein E, Jansson JK, Knight R, Metz TO, Lois C, Geschwind DH, Krajmalnik-Brown R, Mazmanian SK. | Cell | 10.1016/j.cell.2019.05.004 | 2019 | | |
| Mediterranean Diet: Prevention of Colorectal Cancer. | Donovan MG, Selmin OI, Doetschman TC, Romagnolo DF. | Front Nutr | 10.3389/fnut.2017.00059 | 2017 | | |
| Genetics | Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)). | Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Rohde M, Gronow S, Goker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T | Stand Genomic Sci | 10.4056/sigs.3527032 | 2013 | |
| Genetics | Noncontiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov. | Mourembou G, Rathored J, Ndjoyi-Mbiguino A, Lekana-Douki JB, Fenollar F, Robert C, Fournier PE, Raoult D, Lagier JC. | New Microbes New Infect | 10.1016/j.nmni.2015.11.002 | 2016 | |
| Genetics | Non contiguous-finished genome sequence and description of Alistipes obesi sp. nov. | Hugon P, Ramasamy D, Lagier JC, Rivet R, Couderc C, Raoult D, Fournier PE. | Stand Genomic Sci | 10.4056/sigs.3336746 | 2013 | |
| Phylogeny | Anaerocella delicata gen. nov., sp. nov., a strictly anaerobic bacterium in the phylum Bacteroidetes isolated from a methanogenic reactor of cattle farms. | Abe K, Ueki A, Ohtaki Y, Kaku N, Watanabe K, Ueki K. | J Gen Appl Microbiol | 10.2323/jgam.58.405 | 2012 | |
| Phylogeny | Alistipes onderdonkii sp. nov. and Alistipes shahii sp. nov., of human origin. | Song Y, Kononen E, Rautio M, Liu C, Bryk A, Eerola E, Finegold SM. | Int J Syst Evol Microbiol | 10.1099/ijs.0.64318-0 | 2006 | |
| Phylogeny | Mucinivorans hirudinis gen. nov., sp. nov., an anaerobic, mucin-degrading bacterium isolated from the digestive tract of the medicinal leech Hirudo verbana. | Nelson MC, Bomar L, Maltz M, Graf J | Int J Syst Evol Microbiol | 10.1099/ijs.0.000052 | 2015 | |
| Phylogeny | Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. | Rautio M, Eerola E, Vaisanen-Tunkelrott ML, Molitoris D, Lawson P, Collins MD, Jousimies-Somer H | Syst Appl Microbiol | 10.1078/072320203322346029 | 2003 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive14030.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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