Name: Alistipes finegoldii DSM 17242
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14030

Type strain:

Species: Alistipes finegoldii

Culture col. no.: DSM 17242, CCUG 46020, CIP 107999, KCTC 15236, AHN 2437, JCM 16770, VTT E-093113T

Strain history: <- CCUG <- M Rautio, Helsinki, strain AHN 2437

NCBI tax ID(s): 679935 (strain), 214856 (species)

Other strains from Alistipes finegoldii

A. finegoldii CCUG 46022
A. finegoldii CCUG 66207
A. finegoldii CCUG 67279

Section

Alistipes finegoldii DSM 17242 is an anaerobe, mesophilic, rod-shaped human pathogen that was isolated from human, appendix tissue, 14-year-old boy.

rod-shaped
anaerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Rikenellaceae*
	Genus	*Alistipes*
	Species	**Alistipes finegoldii**
	Full Scientific Name (PNU)	Alistipes finegoldii Rautio et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #69480]	Gram stain	negative Confidence in %99.868

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #6849]	Type of hemolysis	gamma
[Ref.: #6849]	Incubation period	1-2 days

Multimedia content

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Caption:

electron microscopic image

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

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Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #6849]	growth	37 °C
[Ref.: #41769]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #6849]	Temperature range	mesophilic
[Ref.: #41769]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6849]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.245

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #6849]	10910	-	-	+	+	-	+	+/-	-	-	+	-	-	+	+	-	-	+	-	-	+	-	-	-	-	+	-	-	+	-
[Ref.: #6849]	10909	-	-	+	+	-	+	+/-	-	-	+	-	-	-	+	-	+	+	-	-	+	-	-	-	-	+	-	-	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6849]	Sample type/isolated from	human, appendix tissue, 14-year-old boy
[Ref.: #6849]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #6849]	Country	Finland
[Ref.: #6849]	Country ISO 3 Code	FIN
[Ref.: #6849]	Continent	Europe

[Ref.: #57028]	Sample type/isolated from	Human appendix tissue,14-yr-old boy
[Ref.: #57028]	Sampling date	1988
[Ref.: #57028]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #57028]	Country	Finland
[Ref.: #57028]	Country ISO 3 Code	FIN
[Ref.: #57028]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human appendiceal tissue sample

[Ref.: #67771]	Sample type/isolated from	From human appendix tissue, 14-yr-old boy
[Ref.: #67771]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #67771]	Country	Finland
[Ref.: #67771]	Country ISO 3 Code	FIN
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	#Male
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6849]	Pathogenicity (human)	yes, in single cases
[Ref.: #6849]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6849]	Bacteroides sp. ANH 2437 16S rRNA gene	AJ518874	1465	ENA	679935 tax ID
[Ref.: #67770]	Alistipes finegoldii gene for 16S ribosomal RNA, partial sequence, strain: JCM 16770	AB554230	1487	ENA	214856 tax ID
[Ref.: #20218]	Alistipes finegoldii strain CIP 107999 sequence clone 3 16S ribosomal RNA gene, partial sequence	AY643083	1446	ENA	679935 tax ID	*
[Ref.: #20218]	Alistipes finegoldii strain CIP 107999 sequence clone 4 16S ribosomal RNA gene, partial sequence	AY643084	1446	ENA	679935 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Alistipes finegoldii DSM 17242, complete genome	CP003274		ENA	679935 tax ID
[Ref.: #66792]	Alistipes finegoldii DSM 17242 DSM 17242	GCA_000265365	complete	GenBank	679935 tax ID	*
[Ref.: #66792]	Alistipes finegoldii AHN 2437, DSM 17242	2509601035	complete	JGI IMG/M	679935 tax ID	*

[Ref.: #6849]	GC-content	57 mol%
[Ref.: #67770]	GC-content	56.6 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	57 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	57.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alistipes finegoldii DSM 17242 DSM 17242 NCBI: GCA_000265365.1
[Ref.: #69480]	anaerobic	yes	99.245	yes
[Ref.: #69480]	spore-forming	no	99.999	no
[Ref.: #69480]	gram-positive	no	99.868	yes
[Ref.: #69480]	thermophile	no	99.986	yes
[Ref.: #69480]	motile	no	88.955	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alistipes finegoldii DSM 17242 DSM 17242 NCBI: GCA_000265365.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #6849]

Culture collection no.

DSM 17242, CCUG 46020, CIP 107999, KCTC 15236, AHN 2437, JCM 16770, VTT E-093113T

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Associated Passport(s) in StrainInfo

620809, 330825, 330827

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucinivorans hirudinis gen. nov., sp. nov., an anaerobic, mucin-degrading bacterium isolated from the digestive tract of the medicinal leech Hirudo verbana.	Nelson MC, Bomar L, Maltz M, Graf J	Int J Syst Evol Microbiol	10.1099/ijs.0.000052	2015	*
Genetics	Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437(T)).	Mavromatis K, Stackebrandt E, Munk C, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Rohde M, Gronow S, Goker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T	Stand Genomic Sci	10.4056/sigs.3527032	2013	*
Phylogeny	Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources.	Rautio M, Eerola E, Vaisanen-Tunkelrott ML, Molitoris D, Lawson P, Collins MD, Jousimies-Somer H	Syst Appl Microbiol	10.1078/072320203322346029	2003	*

References

#6849

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17242

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41769 ; Curators of the CIP;
#57028 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46020

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68380

Automatically annotated from API rID32A .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Alistipes finegoldii DSM 17242 DSM 17242

Alistipes finegoldii DSM 17242 DSM 17242

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