Desulfosporosinus fructosivorans (DSM 101609, JCM 31106, 63.6F)

Name: Desulfosporosinus fructosivorans (DSM 101609, JCM 31106, 63.6F)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140297

Type strain

Strain Designation 63.6F

Culture col. no. DSM 101609 JCM 31106 63.6F

NCBI tax ID(s) 2018669

Special Collections DSMZ JCM Literature strains

History DSMZ <- V. Vandieken, ICMB, Univ. Oldenburg, Germany; 63.6F <- V. Vandieken {2014} JCM <-- V. Vandieken; Univ. of Oldenburg, Germany; 63.6F.

Links

Desulfosporosinus fructosivorans 63.6F is an anaerobe, spore-forming, Gram-positive bacterium that was isolated from marine subsurface sediment.

spore-forming Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399302

JCM 31106,DSM 101609

@ref 20215

Last LPSN update 2026-05-29 08:39:41

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Desulfitobacteriaceae

Genus Desulfosporosinus

Species Desulfosporosinus fructosivorans

Full scientific name Desulfosporosinus fructosivorans Vandieken et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43225	positive	2.1-4.5 µm	0.9 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42904	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: Na2SO4 1.99402 g/l NH4Cl 0.997009 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l Glycerol 0.897308 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42904	positive	growth	18
43225	positive	optimum	20
43225	positive	growth	10-20
67770	positive	growth	15

Culture pH

@ref	Ability	Type	PH
43225	positive	optimum	7.5-8.0
43225	positive	growth	6.5-8.0

Physiology and metabolism

Oxygen tolerance

43225

Oxygen toleranceanaerobe

Spore formation

@ref	Type of spore	Spore formation
43225	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43225	NaCl	positive	growth	0-3.5 %
43225	NaCl	positive	optimum	0-0.1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43225	17750 ChEBI	betaine	+	electron donor
43225	18276 ChEBI	dihydrogen	+	electron donor
43225	28262 ChEBI	dimethyl sulfoxide	+	electron acceptor
43225	33403 ChEBI	elemental sulfur	+	electron acceptor
43225	16236 ChEBI	ethanol	+	electron donor
43225	28757 ChEBI	fructose	+	electron donor
43225	28757 ChEBI	fructose	+	fermentation
43225	29806 ChEBI	fumarate	+	electron acceptor
43225	17754 ChEBI	glycerol	+	electron donor
43225	17754 ChEBI	glycerol	+	fermentation
43225	24996 ChEBI	lactate	+	electron donor
43225	25115 ChEBI	malate	+	electron acceptor
43225	25115 ChEBI	malate	+	electron donor
43225	25115 ChEBI	malate	+	fermentation
43225	29864 ChEBI	mannitol	+	electron donor
43225	15361 ChEBI	pyruvate	+	fermentation
43225	17822 ChEBI	serine	+	electron donor
43225	16189 ChEBI	sulfate	+	electron acceptor
43225	17359 ChEBI	sulfite	+	electron acceptor
43225	16094 ChEBI	thiosulfate	+	electron acceptor

Enzymes

@ref	Value	Activity	Ec
43225	catalase	-	1.11.1.6
43225	cytochrome oxidase	-	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	formaldehyde oxidation	100	3 of 3
66794	butanoate fermentation	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	propanol degradation	100	7 of 7
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	isoleucine metabolism	100	8 of 8
66794	coenzyme A metabolism	100	4 of 4
66794	glutamate and glutamine metabolism	96.43	27 of 28
66794	vitamin B1 metabolism	92.31	12 of 13
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	glycolysis	88.24	15 of 17
66794	pyrimidine metabolism	86.67	39 of 45
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	citric acid cycle	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	degradation of aromatic, nitrogen containing compounds	83.33	10 of 12
66794	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
66794	purine metabolism	82.98	78 of 94
66794	alanine metabolism	82.76	24 of 29
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	lipoate biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	starch degradation	80	8 of 10
66794	glycine betaine biosynthesis	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	vitamin B12 metabolism	79.41	27 of 34
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	ketogluconate metabolism	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	glutathione metabolism	71.43	10 of 14
66794	tryptophan metabolism	71.05	27 of 38
66794	sulfate reduction	69.23	9 of 13
66794	oxidative phosphorylation	69.23	63 of 91
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	lipid metabolism	67.74	21 of 31
66794	enterobactin biosynthesis	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	methane metabolism	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	acetoin degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	phenol degradation	65	13 of 20
66794	lysine metabolism	64.29	27 of 42
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	phosphatidylethanolamine bioynthesis	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	urea cycle	61.54	8 of 13
66794	polyamine pathway	60.87	14 of 23
66794	factor 420 biosynthesis	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	3-chlorocatechol degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	non-pathway related	57.89	22 of 38
66794	cysteine metabolism	55.56	10 of 18
66794	nitrate assimilation	55.56	5 of 9
66794	metabolism of disaccharids	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	pantothenate biosynthesis	50	3 of 6
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	allantoin degradation	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	lipid A biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	myo-inositol biosynthesis	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of pentoses	39.29	11 of 28
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	carnitine metabolism	37.5	3 of 8
66794	ascorbate metabolism	36.36	8 of 22
66794	vitamin B6 metabolism	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	cyanate degradation	33.33	1 of 3
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	methanogenesis from CO2	33.33	4 of 12
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4

Fatty acid profile

Metadata FA analysis

@ref

43225

Fatty acid	Percentage
C18:1ω9c	25.2
C16:0	22
C18:0	16.9
C16:1ω7c	12.6
C18:2	3.8
C14:0	3.8
C16:1ω9c	3.2
C18:1ω7c	2
C15:0	1.3
C15:1ω4	1.3
C17:1ω8	1.1
C18:1ω5c	1.1
C17:0	0.9
C15:0 anteiso	0.8
C16:1ω5c	0.7
C15:1ω6c	0.6
C17:0 iso	0.5
C17:1ω6	0.4
C15:1ω8c	0.4
C15:0 iso	0.4
C16:1ω7t	0.3
C16:0 iso	0.2
12-methyl C15:1ω7c	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature	Isolation procedure
42904	marine subsurface sediment		Baltic Sea, Landsort Deep (IODP Expedition 347, Research vessel "Greatship Manisha"); sediment depth of 12.2 m at station M0063	Sweden	SWE	Europe	58.6223	18.2542 58.6223/18.2542
43225	sediment samples from 12.2 m depth	2013-10-17	Landsort Deep, Baltic Sea	Sweden	SWE	Europe	58	18 58/18	freshwater medium	15	several transfers of anoxic deep-agar dilution series
67770	Subsurface of marine sediment from Little Belt (Baltic Sea)			Denmark	DNK	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42904	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM476604v1 assembly for Desulfosporosinus fructosivorans 63.6F	scaffold	GCA_004766045	2018669.4	2995457591	2018669	63.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42904	Desulfosporosinus fructosivorans strain 63.6F 16S ribosomal RNA gene, partial sequence	KX822015	1529		2018669

GC content

@ref	GC-content (mol%)	Method
43225	43.2
42904	43.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulfosporosinus fructosivorans 63.6F
NCBI: GCA_004766045.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.83	yes
125438	anaerobic	anaerobicⓘ	yes	67.33	yes
125438	aerobic	aerobicⓘ	no	83.67	yes
125438	spore-forming	spore-formingⓘ	yes	82.82	no
125438	thermophilic	thermophileⓘ	no	86.96	yes
125438	flagellated	motile2+ⓘ	yes	72.81	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Desulfosporosinus fructosivorans Strain 63.6F(T), Isolated from Marine Sediment in the Baltic Sea.	Hausmann B, Vandieken V, Pjevac P, Schreck K, Herbold CW, Loy A	Microbiol Resour Announc	10.1128/MRA.00427-19	2019
Phylogeny	Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. and Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea.	Vandieken V, Niemann H, Engelen B, Cypionka H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001883	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42904	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101609
#43225	Verona Vandieken, Helge Niemann, Bert Engelen, Heribert Cypionka: Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. And Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea. IJSEM 67: 1887 - 1893 2017 ( DOI 10.1099/ijsem.0.001883 , PubMed 28646634 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Desulfosporosinus fructosivorans (DSM 101609, JCM 31106, 63.6F)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004766045

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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