Marinisporobacter balticus (DSM 102940, JCM 31103, 59.4M)

Name: Marinisporobacter balticus (DSM 102940, JCM 31103, 59.4M)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140293

Type strain

Strain Designation 59.4M

Culture col. no. DSM 102940 JCM 31103 59.4M

NCBI tax ID(s) 2018667

Special Collections DSMZ JCM Literature strains

History DSMZ <- V. Vandieken, ICMB, Univ. Oldenburg, Germany; 59.4M <- V. Vandieken {2014} JCM <-- V. Vandieken; Univ. of Oldenburg, Germany; 59.4M.

Links

Marinisporobacter balticus 59.4M is a facultative anaerobe, heterotroph, spore-forming bacterium that was isolated from marine subsurface sediment, sediment depth of 12.7 m.

spore-forming Gram-positive rod-shaped facultative anaerobe heterotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401143

JCM 31103,DSM 102940

@ref 20215

Last LPSN update 2026-05-29 08:39:41

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Marinisporobacter

Species Marinisporobacter balticus

Full scientific name Marinisporobacter balticus Vandieken et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43225	positive	2.7-7.8 µm	0.6-0.8 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42900	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: D-Fructose 3.48953 g/l Na2SO4 1.99402 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42900	positive	growth	20
43225	positive	optimum	25
43225	positive	growth	15-30
67770	positive	growth	25

Culture pH

@ref	Ability	Type	PH
43225	positive	optimum	7.0-7.3
43225	positive	growth	6.6-7.7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43225	facultative anaerobe
125439	anaerobe	97.967

Nutrition type

43225

Typeheterotroph

Spore formation

@ref	Type of spore	Spore formation
43225	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43225	NaCl	positive	growth	0.1-4.5 %
43225	NaCl	positive	optimum	0.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43225	52682 ChEBI	1,2-butandiol	-	anaerobic growth
43225	30089 ChEBI	acetate	-	anaerobic growth
43225	16449 ChEBI	alanine	-	anaerobic growth
43225	22599 ChEBI	arabinose	-	anaerobic growth
43225	29016 ChEBI	arginine	-	anaerobic growth
43225	22653 ChEBI	asparagine	-	anaerobic growth
43225	17750 ChEBI	betaine	-	anaerobic growth
43225	28885 ChEBI	butanol	-	anaerobic growth
43225	17968 ChEBI	butyrate	-	anaerobic growth
43225	16526 ChEBI	carbon dioxide	-	anaerobic growth
43225		casein	+	anaerobic growth
43225		casein	+	aerobic growth
43225	17057 ChEBI	cellobiose	-	anaerobic growth
43225	16236 ChEBI	ethanol	-	anaerobic growth
43225	15740 ChEBI	formate	-	anaerobic growth
43225	28757 ChEBI	fructose	+	anaerobic growth
43225	29806 ChEBI	fumarate	+	anaerobic growth
43225	28260 ChEBI	galactose	-	anaerobic growth
43225	17234 ChEBI	glucose	+	anaerobic growth
43225	28300 ChEBI	glutamine	-	anaerobic growth
43225	15978 ChEBI	glycerol 3-phosphate	-	anaerobic growth
43225	27570 ChEBI	histidine	-	anaerobic growth
43225	24898 ChEBI	isoleucine	-	anaerobic growth
43225	24996 ChEBI	lactate	-	anaerobic growth
43225	17716 ChEBI	lactose	-	anaerobic growth
43225	25094 ChEBI	lysine	-	anaerobic growth
43225	25115 ChEBI	malate	-	anaerobic growth
43225	17306 ChEBI	maltose	-	anaerobic growth
43225	29864 ChEBI	mannitol	-	anaerobic growth
43225	17790 ChEBI	methanol	-	anaerobic growth
43225	506227 ChEBI	N-acetylglucosamine	-	anaerobic growth
43225	17632 ChEBI	nitrate	-	electron acceptor
43225		peptone	+	anaerobic growth
43225		peptone	+	aerobic growth
43225	26271 ChEBI	proline	-	anaerobic growth
43225	28831 ChEBI	propanol	-	anaerobic growth
43225	17272 ChEBI	propionate	-	anaerobic growth
43225	15361 ChEBI	pyruvate	-	anaerobic growth
43225	26546 ChEBI	rhamnose	-	anaerobic growth
43225	33942 ChEBI	ribose	-	anaerobic growth
43225	17822 ChEBI	serine	-	anaerobic growth
43225	30031 ChEBI	succinate	-	anaerobic growth
43225	16189 ChEBI	sulfate	-	electron acceptor
43225	18139 ChEBI	trimethylamine	-	anaerobic growth
43225		tryptone	+	anaerobic growth
43225		tryptone	+	aerobic growth
43225	18222 ChEBI	xylose	-	anaerobic growth
43225		yeast extract	+	anaerobic growth
43225		yeast extract	+	aerobic growth

Enzymes

@ref	Value	Activity	Ec
43225	catalase	+	1.11.1.6
43225	cytochrome oxidase	-	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	threonine metabolism	100	10 of 10
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	vitamin B1 metabolism	92.31	12 of 13
66794	vitamin B12 metabolism	91.18	31 of 34
66794	alanine metabolism	89.66	26 of 29
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	citric acid cycle	85.71	12 of 14
66794	urea cycle	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	cellulose degradation	80	4 of 5
66794	hydrogen production	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	myo-inositol biosynthesis	80	8 of 10
66794	propionate fermentation	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	pyrimidine metabolism	73.33	33 of 45
66794	flavin biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	arginine metabolism	66.67	16 of 24
66794	formaldehyde oxidation	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	methionine metabolism	65.38	17 of 26
66794	proline metabolism	63.64	7 of 11
66794	pentose phosphate pathway	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	gluconeogenesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	oxidative phosphorylation	61.54	56 of 91
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	tryptophan metabolism	60.53	23 of 38
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	lipid metabolism	54.84	17 of 31
66794	lysine metabolism	52.38	22 of 42
66794	starch degradation	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	degradation of sugar alcohols	50	8 of 16
66794	toluene degradation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	lactate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	degradation of sugar acids	48	12 of 25
66794	tyrosine metabolism	42.86	6 of 14
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	phenol degradation	40	8 of 20
66794	methylglyoxal degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of hexoses	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	allantoin degradation	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	polyamine pathway	30.43	7 of 23
66794	coenzyme M biosynthesis	30	3 of 10
66794	glutathione metabolism	28.57	4 of 14
66794	degradation of pentoses	28.57	8 of 28
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	vitamin E metabolism	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	sulfate reduction	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	4-hydroxymandelate degradation	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

43225

Fatty acid	Percentage
C14:0	30.6
C16:1ω9c	25.1
C18:0	16.5
C18:1ω9c	12.6
C16:0	11.2
C15:0 anteiso	10
C18:2	1.6
C18:1ω7c	1
C16:1ω7c	0.9
C15:1ω8c	0.6
C15:1ω4	0.5
C18:1ω5c	0.5
C16:1ω5c	0.4
C15:0	0.4
C15:0 iso	0.3
C17:1ω8	0.3
C17:0	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature	Isolation procedure
42900	marine subsurface sediment, sediment depth of 12.7 m		Baltic Sea, Little Belt (IODP Expedition 347, Research vessel "Greatship Manisha"), station M0059	Denmark	DNK	Europe	55.0048	10.1082 55.0048/10.1082
43225	sediment samples from depth of 12.7 m	2013-10-30	Little Belt, Baltic Sea	Denmark	DNK	Europe	55	10 55/10	seawater medium	15	several transfers of anoxic deep-agar dilution series
67770	Subsurface of marine sediment from Little Belt (Baltic Sea)			Denmark	DNK	Europe

Taxonmaps

69479

Global distribution of 16S sequence KX822012 (>99% sequence identity) for Marinisporobacter balticus subclade from Microbeatlas

Aquatic Samples	2814
Soil Samples	117
Animal Samples	168
Plant Samples	11
Total Samples	3110

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42900	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM434570v1 assembly for Marinisporobacter balticus DSM 102940	contig	GCA_004345705	2018667.3	2795385446	2018667	63.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42900	Marinisporobacter balticus strain 59.4M 16S ribosomal RNA gene, partial sequence	KX822012	1435		2018667

GC content

@ref	GC-content (mol%)	Method
43225	42.9
42900	42.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM434570v1 assembly for Marinisporobacter balticus DSM 102940
NCBI: GCA_004345705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.97	no
125439	gram_stain	BacteriaNetⓘ	variable	49.66	no
125439	motility	BacteriaNetⓘ	yes	67.55	no
125439	spore_formation	BacteriaNetⓘ	yes	61.29	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinisporobacter balticus strain DSM 102940
PATRIC: 2018667.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	53.39	no
125438	anaerobic	anaerobicⓘ	yes	71.31	yes
125438	spore-forming	spore-formingⓘ	yes	77.78	yes
125438	aerobic	aerobicⓘ	no	93.37	yes
125438	thermophilic	thermophileⓘ	no	87.08	yes
125438	flagellated	motile2+ⓘ	yes	80.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. and Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea.	Vandieken V, Niemann H, Engelen B, Cypionka H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001883	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42900	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102940
#43225	Verona Vandieken, Helge Niemann, Bert Engelen, Heribert Cypionka: Marinisporobacter balticus gen. nov., sp. nov., Desulfosporosinus nitroreducens sp. nov. And Desulfosporosinus fructosivorans sp. nov., new spore-forming bacteria isolated from subsurface sediments of the Baltic Sea. IJSEM 67: 1887 - 1893 2017 ( DOI 10.1099/ijsem.0.001883 , PubMed 28646634 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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About us

Marinisporobacter balticus (DSM 102940, JCM 31103, 59.4M)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Enzymes

Pathway annotation

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004345705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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