Name: Pyrobaculum igneiluti 521
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140291

Type strain:

Species: Pyrobaculum igneiluti

Strain Designation: 521

Culture col. no.: DSM 103086, ATCC TSD-56

Strain history: <- J. Lee, Pomona College, Biology, Claremont, USA; 521 <- E. J. Crane III

NCBI tax ID(s): 1806371 (species)

SI-ID 404402

DSM 103086

Section

Pyrobaculum igneiluti 521 is an obligate anaerobe, autotroph, hyperthermophilic archaeon that was isolated from mud volcano .

rod-shaped
autotroph
hyperthermophilic
obligate anaerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Thermoproteales*
	Family	*Thermoproteaceae*
	Genus	*Pyrobaculum*
	Species	**Pyrobaculum igneiluti**
	Full Scientific Name (LPSN)	Pyrobaculum igneiluti Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43269]	Cell length	2-7 µm

[Ref.: #43269]	Cell shape	rod-shaped

[Ref.: #43269]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42898]

Culture medium

PYROBACULUM MEDIUM (DSMZ Medium 390)

[Ref.: #42898]

Culture medium growth

[Ref.: #42898]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42898]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42898]	growth	90 °C
[Ref.: #43269]	optimum	90 °C
[Ref.: #43269]	growth	75-95 °C

[Ref.: #42898]	Temperature range	hyperthermophilic
[Ref.: #43269]	Temperature range	hyperthermophilic

	pH	Kind of pH		pH
[Ref.: #43269]			optimum	5.5-7.3
[Ref.: #43269]			growth	4-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43269]

Oxygen tolerance

obligate anaerobe

[Ref.: #43269]

Nutrition type

autotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43269]		NaCl		growth	0-6	%(w/v)
[Ref.: #43269]		NaCl		optimum	0-2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43269]	acetate ChEBI	-	oxidation
[Ref.: #43269]	casamino acids	+	carbon source
[Ref.: #43269]	cellobiose ChEBI	-	oxidation
[Ref.: #43269]	D-galactose ChEBI	-	oxidation
[Ref.: #43269]	elemental sulfur ChEBI	-	reduction
[Ref.: #43269]	ferrihydrite	+	reduction
[Ref.: #43269]	gelatin ChEBI	+	carbon source
[Ref.: #43269]	glucose ChEBI	-	oxidation
[Ref.: #43269]	glutathione oxidized ChEBI	-	reduction
[Ref.: #43269]	L-cystine ChEBI	-	reduction
[Ref.: #43269]	lactate ChEBI	-	oxidation
[Ref.: #43269]	lactose ChEBI	-	oxidation
[Ref.: #43269]	maltose hydrate	-	oxidation
[Ref.: #43269]	mannitol ChEBI	-	oxidation
[Ref.: #43269]	nitrate ChEBI	-	reduction
[Ref.: #43269]	peptone	+	carbon source
[Ref.: #43269]	pyruvate ChEBI	-	oxidation
[Ref.: #43269]	sorbitol ChEBI	-	oxidation
[Ref.: #43269]	starch ChEBI	-	oxidation
[Ref.: #43269]	sucrose ChEBI	-	oxidation
[Ref.: #43269]	sulfate ChEBI	-	reduction
[Ref.: #43269]	sulfite ChEBI	-	reduction
[Ref.: #43269]	thiosulfate ChEBI	+	reduction
[Ref.: #43269]	trehalose ChEBI	-	oxidation
[Ref.: #43269]	tryptone/yeast/beef (tyb)	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42898]	Sample type/isolated from	mud volcano (95°C)
[Ref.: #42898]	Geographic location (country and/or sea, region)	Southern California, Salton Sea geothermal system
[Ref.: #42898]	Country	USA
[Ref.: #42898]	Country ISO 3 Code	USA
[Ref.: #42898]	Continent	North America
[Ref.: #42898]	Geographic location	33.2188°/-115.6010°

[Ref.: #43269]	Sample type/isolated from	mud volcano
[Ref.: #43269]	Geographic location (country and/or sea, region)	Salton Sea in southern California, USA
[Ref.: #43269]	Country	USA
[Ref.: #43269]	Country ISO 3 Code	USA
[Ref.: #43269]	Continent	North America
[Ref.: #43269]	Geographic location	33.0000°/-115.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU720559 (>99% sequence identity) for Pyrobaculum igneiluti from Microbeatlas

Aquatic Samples	12
Soil Samples
Animal Samples
Plant Samples
Total Samples	12

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42898]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42898]	Pyrobaculum igneiluti strain 521 16S ribosomal RNA gene, partial sequence	KU720559	1503	ENA	1806371 tax ID

Availability in culture collections External links

[Ref.: #42898]

Culture collection no.

DSM 103086, ATCC TSD-56

[Ref.: #96597]

SI-ID 404402

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pyrobaculum igneiluti sp. nov., a novel anaerobic hyperthermophilic archaeon that reduces thiosulfate and ferric iron.	Lee JY, Iglesias B, Chu CE, Lawrence DJP, Crane Iii EJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001850	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42898

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103086

#43269

Jerry Y. Lee, Brenda Iglesias, Caleb E. Chu, Daniel J. P. Lawrence and Edward Jerome Crane: Pyrobaculum igneiluti sp. nov., a novel anaerobic hyperthermophilic archaeon that reduces thiosulfate and ferric iron. IJSEM 67: 1714 - 1719 2017 ( DOI 10.1099/ijsem.0.001850 , PubMed 28151382 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96597

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404402.1 )

* These data were automatically processed and therefore are not curated

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