Name: Vitiosangium cumulatum MCy10943
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140283

Type strain:

Species: Vitiosangium cumulatum

Strain Designation: MCy10943

Culture col. no.: DSM 102952, NCCB 100600

Strain history: <- R.P. Awal, Helmholtz Institute for Pharmaceutical Research, Saarbrücken, Germany; MCy10943

NCBI tax ID(s): 1867796 (species)

Section

Vitiosangium cumulatum MCy10943 is an aerobe, chemoheterotroph, spore-forming bacterium that was isolated from soil sample provided by National College, Tribhuvan University, Nepal.

motile
rod-shaped
spore-forming
aerobe
chemoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Myxococcales*
	Family	*Archangiaceae*
	Genus	*Vitiosangium*
	Species	**Vitiosangium cumulatum**
	Full Scientific Name (PNU)	Vitiosangium cumulatum Awal et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43219]	Cell length	7.0-16.0 µm
[Ref.: #43219]	Cell width	0.8-0.9 µm
[Ref.: #43219]	Cell shape	rod-shaped
[Ref.: #43219]	Motility	yes
[Ref.: #43219]	Flagellum arrangement	gliding

[Ref.: #43219]	Colony color	yellowish orange
[Ref.: #43219]	Cultivation medium used	buffered VY/2 agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43219]

Culture medium

buffered VY/2 agar

[Ref.: #43219]

Culture medium growth

[Ref.: #42890]

Culture medium

VY/2 AGAR (DSMZ Medium 9)

[Ref.: #42890]

Culture medium growth

[Ref.: #42890]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #42890]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42890]			growth	28 °C
[Ref.: #43219]			growth	22-40 °C

[Ref.: #42890]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43219]			optimum	7.0-8.0
[Ref.: #43219]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43219]

Oxygen tolerance

aerobe

[Ref.: #43219]

Nutrition type

chemoheterotroph

[Ref.: #43219]	Spore description	Oval to short rods
[Ref.: #43219]	Type of spore	myxospore
[Ref.: #43219]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43219]		NaCl		maximum	0.6	%(w/v)

[Ref.: #43219]

Observation

Lyses bacteria and yeast

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43219]	agar ChEBI	-	degradation
[Ref.: #43219]	casein	+	hydrolysis
[Ref.: #43219]	casitone	+	growth
[Ref.: #43219]	cellobiose ChEBI	+	growth
[Ref.: #43219]	cellulose ChEBI	-	degradation
[Ref.: #43219]	chitin ChEBI	-	hydrolysis
[Ref.: #43219]	esculin ChEBI	+	hydrolysis
[Ref.: #43219]	galactose ChEBI	+	growth
[Ref.: #43219]	gelatin ChEBI	+	hydrolysis
[Ref.: #43219]	meat extract	+	growth
[Ref.: #43219]	milk	+	hydrolysis
[Ref.: #43219]	soyton	+	growth
[Ref.: #43219]	starch ChEBI	+	hydrolysis
[Ref.: #43219]	starch ChEBI	+	growth
[Ref.: #43219]	tryptophan ChEBI	+	growth
[Ref.: #43219]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43219]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43219]	xylan ChEBI	+	hydrolysis
[Ref.: #43219]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance	Concentration
[Ref.: #43219]	ampicillin ChEBI		yes	50	µg/mL
[Ref.: #43219]	bacitracin ChEBI		yes	50	µg/mL
[Ref.: #43219]	cephalothin ChEBI		yes	50	µg/mL
[Ref.: #43219]	fusidate ChEBI	yes
[Ref.: #43219]	gentamicin ChEBI		yes		µg/mL
[Ref.: #43219]	hygromycin ChEBI		yes	50	µg/mL
[Ref.: #43219]	kanamycin ChEBI		yes	50	µg/mL
[Ref.: #43219]	kasugamycin ChEBI		yes	50	µg/mL
[Ref.: #43219]	neomycin ChEBI		yes		µg/mL
[Ref.: #43219]	oxytetracycline ChEBI	yes
[Ref.: #43219]	polymyxin ChEBI		yes		µg/mL
[Ref.: #43219]	spectinomycin ChEBI		yes	50	µg/mL
[Ref.: #43219]	thiostrepton ChEBI	yes
[Ref.: #43219]	trimethoprim ChEBI		yes		µg/mL
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43219]	acid phosphatase	+	3.1.3.2
[Ref.: #43219]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43219]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43219]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43219]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43219]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43219]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43219]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43219]	beta-glucosidase	+	3.2.1.21
[Ref.: #43219]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43219]	catalase	+	1.11.1.6
[Ref.: #43219]	cystine arylamidase	+	3.4.11.3
[Ref.: #43219]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43219]	esterase (C 4)	+
[Ref.: #43219]	esterase Lipase (C 8)	+
[Ref.: #43219]	leucine arylamidase	+	3.4.11.1
[Ref.: #43219]	lipase (C 14)	+/-
[Ref.: #43219]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43219]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43219]	trypsin	+	3.4.21.4
[Ref.: #43219]	urease	-	3.5.1.5
[Ref.: #43219]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43219]

Fatty acid	Percentage
C17:0 iso 2OH	20.9
C16:1	14.8
C15:0 iso	12.8
C16:0	11.4
C17:0 iso	10.4
C16:0 iso	7.2
iso-C15:0 OAG	7.1
C14:0	3.9
iso-C15:0 DMA	3.7
C15:0 iso 3OH	1.4
C16:0 iso 2OH	1.2
C14:1	0.8
C16:0 2OH	0.6
C13:0 iso	0.4
C17:1 iso	0.4
C16:2	0.4
C18:0	0.4
C15:1 iso	0.3
C15:0	0.3
C14:0 iso	0.2
C10:0	0.2
C16:0 OAG	0.2
C14:0 3OH	0.2
C11:0 iso	0.1
C16:0 3OH	0.1
iso-C18:0 2-OH	0.1
C12:0	0.1
iso-C17:0 OAG	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42890]	Sample type/isolated from	soil sample provided by National College, Tribhuvan University, Nepal
[Ref.: #42890]	Country	Nepal
[Ref.: #42890]	Country ISO 3 Code	NPL
[Ref.: #42890]	Continent	Asia

[Ref.: #43219]	Sample type/isolated from	Nepalese soil sample
[Ref.: #43219]	Country	Nepal
[Ref.: #43219]	Country ISO 3 Code	NPL
[Ref.: #43219]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX430042 (>99% sequence identity) for Vitiosangium cumulatum from Microbeatlas

Aquatic Samples	8
Soil Samples	136
Animal Samples	5
Plant Samples	13
Total Samples	162

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42890]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42890]	Vitiosangium cumulatum strain MCy10943 16S ribosomal RNA gene, partial sequence	KX430042	1526	ENA	1867796 tax ID

[Ref.: #42890]

GC-content

72.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #42890]

Culture collection no.

DSM 102952, NCCB 100600

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae.	Awal RP, Garcia R, Gemperlein K, Wink J, Kunwar B, Parajuli N, Muller R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001829	2017	*
Pathogenicity	2-Hydroxysorangiadenosine: Structure and Biosynthesis of a Myxobacterial Sesquiterpene-Nucleoside.	Okoth DA, Hug JJ, Garcia R, Sproer C, Overmann J, Muller R	Molecules	10.3390/molecules25112676	2020	*
Metabolism	Three New Stigmatellin Derivatives Reveal Biosynthetic Insights of Its Side Chain Decoration.	Okoth DA, Hug JJ, Garcia R, Muller R	Molecules	10.3390/molecules27144656	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42890

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102952

#43219

Ram Prasad Awal, Ronald Garcia, Katja Gemperlein, Joachim Wink, Bikram Kunwar, Niranjan Parajuli and Rolf Müller: Vitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae. IJSEM 67: 1422 - 1430 2017 ( DOI 10.1099/ijsem.0.001829 , PubMed 28141508 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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