Name: Alkaliphilus hydrothermalis FatMR1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140278

Type strain:

Species: Alkaliphilus hydrothermalis

Strain Designation: FatMR1

Culture col. no.: DSM 25890, JCM 18390

Strain history: M.-L. Fardeau FatMR1.

NCBI tax ID(s): 1482730 (species)

SI-ID 401822

DSM 25890

Section

Alkaliphilus hydrothermalis FatMR1 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from active alkaline hydrothermal chimney of a shallow submarine hydrothermal field.

motile
spore-forming
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Alkaliphilus*
	Species	**Alkaliphilus hydrothermalis**
	Full Scientific Name (LPSN)	Alkaliphilus hydrothermalis Ben Aissa et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %94.53

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42885]

Culture medium

ALKALIPHILUS HYDROTHERMALIS MEDIUM (DSMZ Medium 1662)

[Ref.: #42885]

Culture medium growth

[Ref.: #42885]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42885]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42885]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #42885]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %99.739

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42885]	Sample type/isolated from	active alkaline hydrothermal chimney of a shallow submarine hydrothermal field
[Ref.: #42885]	Geographic location (country and/or sea, region)	New Caledonia, Prony Bay
[Ref.: #42885]	Country	France
[Ref.: #42885]	Country ISO 3 Code	FRA
[Ref.: #42885]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hydrothermal chimney in Prony Bay
[Ref.: #67770]	Geographic location (country and/or sea, region)	New Caledonia
[Ref.: #67770]	Country	French Overseas
[Ref.: #67770]	Country ISO 3 Code	FRA
* marker position based on {}

Isolation sources categories

#Condition	#Alkaline	-
#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ159210 (>99% sequence identity) for Alkaliphilus hydrothermalis from Microbeatlas

Aquatic Samples	495
Soil Samples	131
Animal Samples	14
Plant Samples	4
Total Samples	644

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42885]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42885]	Alkaliphilus hydrothermalis strain FatMR1 16S ribosomal RNA gene, partial sequence	KJ159210	1454	ENA	1482730 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Alkaliphilus hydrothermalis DSM 25890	GCA_016908555	contig	GenBank	1482730 tax ID	*
[Ref.: #66792]	Alkaliphilus hydrothermalis strain DSM 25890	1482730.5	wgs	PATRIC	1482730 tax ID	*
[Ref.: #66792]	Alkaliphilus hydrothermalis DSM 25890	2901163782	draft	JGI IMG/M	1482730 tax ID	*

[Ref.: #42885]

GC-content

37.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkaliphilus hydrothermalis strain DSM 25890 PATRIC: 1482730.5
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkaliphilus hydrothermalis strain DSM 25890 PATRIC: 1482730.5
[Ref.: #69480]	motile	yes	85.45	no
[Ref.: #69480]	gram-positive	yes	55.248	no
[Ref.: #69480]	anaerobic	yes	97.571	no
[Ref.: #69480]	halophile	no	88.223	no
[Ref.: #69480]	spore-forming	yes	97.04	no
[Ref.: #69480]	glucose-util	yes	88.776	no
[Ref.: #69480]	flagellated	no	54.354	no
[Ref.: #69480]	thermophile	no	97.807	yes
[Ref.: #69480]	aerobic	no	97.124	no
[Ref.: #69480]	glucose-ferment	no	57.262	no

Availability in culture collections External links

[Ref.: #42885]

Culture collection no.

DSM 25890, JCM 18390

[Ref.: #96584]

SI-ID 401822

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of Alkaliphilus hydrothermalis sp. nov., a novel alkaliphilic anaerobic bacterium, isolated from a carbonaceous chimney of the Prony hydrothermal field, New Caledonia.	Ben Aissa F, Postec A, Erauso G, Payri C, Pelletier B, Hamdi M, Fardeau ML, Ollivier B	Extremophiles	10.1007/s00792-014-0697-y	2014	*
Phylogeny	Serpentinicella alkaliphila gen. nov., sp. nov., a novel alkaliphilic anaerobic bacterium isolated from the serpentinite-hosted Prony hydrothermal field, New Caledonia.	Mei N, Postec A, Erauso G, Joseph M, Pelletier B, Payri C, Ollivier B, Quemeneur M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001375	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42885

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25890

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96584

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401822.1 )

* These data were automatically processed and therefore are not curated

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Alkaliphilus hydrothermalis strain DSM 25890

Alkaliphilus hydrothermalis strain DSM 25890

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