Luteitalea pratensis (DSM 100886, KCTC 52215, HEG_-6_39)

Name: Luteitalea pratensis (DSM 100886, KCTC 52215, HEG_-6_39)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140275

Type strain

Strain Designation HEG_-6_39

Culture col. no. DSM 100886 KCTC 52215 HEG_-6_39

NCBI tax ID(s) 1855912

Special Collections DSMZ KCTC Literature strains

Links

Luteitalea pratensis HEG_-6_39 is an aerobe, chemoorganotroph, Gram-negative prokaryote that forms circular colonies and was isolated from mown pasture grassland soil.

Gram-negative rod-shaped colony-forming aerobe chemoorganotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403387

KCTC 52215,DSM 100886

@ref 20215

Last LPSN update 2025-12-16 10:03:33

Domain Pseudomonadati

Phylum Acidobacteriota

Class Vicinamibacteria

Order Vicinamibacterales

Family Vicinamibacteraceae

Genus Luteitalea

Species Luteitalea pratensis

Full scientific name Luteitalea pratensis Vieira et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43190	negative	0.9-1.4 µm	0.6-0.75 µm	rod-shaped
125438	negative					93.779

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43190	0.5-1.0 mm	dark yellow	circular	soil solution equivalent (SSE)/HD 1 : 10 medium

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43190	soil solution equivalent (SSE)/HD 1 : 10 medium
42882	SSE/HD1:10 (DSMZ Medium 1426)		Medium recipe at MediaDive	Name: SSE/HD 1:10 MEDIUM (DSMZ Medium 1426) Composition: MES 1.95 g/l Peptone 0.5 g/l CaSO4 x 2 H2O 0.4303 g/l MgSO4 x 7 H2O 0.3695 g/l Yeast extract 0.25 g/l Na NO3 0.212 g/l CaCl2 x 2 H2O 0.1469 g/l Ca(NO3)2 x 4 H2O 0.118 g/l MgCl2 x 6 H2O 0.1018 g/l Glucose 0.1 g/l (NH4)2SO4 0.09915 g/l NH4Cl 0.05345 g/l K2SO4 0.0435 g/l FeSO4 x 7 H2O 0.00555 g/l KH2PO4 0.00340213 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l Lipoic acid 5e-06 g/l D-Calcium pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Riboflavin 5e-06 g/l Thiamine-HCl x 2 H2O 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42882	positive	growth	28	mesophilic
43190	positive	optimum	20-30
43190	positive	growth	0-36
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
43190	positive	optimum	6.1-7.5
43190	positive	growth	5.3-8.3

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43190	aerobe
67771	aerobe
125439	obligate aerobe	99.9

Nutrition type

43190

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
43190
125439		91.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43190	NaCl	positive	growth	0-1 %(w/v)
43190	NaCl	positive	optimum	0.25 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43190	52682 ChEBI	1,2-butandiol	-	growth
43190	16997 ChEBI	1,2-propandiol	-	growth
43190	62064 ChEBI	2,3-butanediol	-	growth
43190	64552 ChEBI	2-hydroxybutyrate	-	growth
43190		2-oxogluconate	+	carbon source
43190	30916 ChEBI	2-oxoglutarate	-	growth
43190	28644 ChEBI	2-oxopentanoate	-	growth
43190	16724 ChEBI	4-hydroxybutyrate	-	growth
43190	39150 ChEBI	4-oxopentanoate	-	growth
43190	15688 ChEBI	acetoin	-	growth
43190	17128 ChEBI	adipate	-	growth
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
43190	16449 ChEBI	alanine	-	growth
43190	22605 ChEBI	arabinitol	-	growth
43190	22599 ChEBI	arabinose	-	growth
43190	29016 ChEBI	arginine	-	growth
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
43190	22651 ChEBI	ascorbate	-	growth
43190	22653 ChEBI	asparagine	-	growth
43190	35391 ChEBI	aspartate	+	carbon source
43190	16150 ChEBI	benzoate	-	growth
43190	8295 ChEBI	beta-hydroxybutyrate	-	growth
43190	28885 ChEBI	butanol	-	growth
43190	17968 ChEBI	butyrate	-	growth
43190		casamino acids	+	carbon source
43190		casein hydrolysate	+	carbon source
43190	17057 ChEBI	cellobiose	+	carbon source
43190	16947 ChEBI	citrate	-	growth
43190	35899 ChEBI	crotonate	-	growth
43190	15356 ChEBI	cysteine	-	growth
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
43190	27689 ChEBI	decanoate	-	growth
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
43190	33946 ChEBI	erythrose	-	growth
43190	23958 ChEBI	erythrulose	-	growth
43190	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
43190	16236 ChEBI	ethanol	-	growth
43190	30742 ChEBI	ethylene glycol	-	growth
43190		fermented rumen extract	-	growth
43190	15740 ChEBI	formate	-	growth
43190	28757 ChEBI	fructose	-	growth
43190	33984 ChEBI	fucose	-	growth
43190	29806 ChEBI	fumarate	-	growth
43190	16813 ChEBI	galactitol	-	growth
43190	28260 ChEBI	galactose	+	carbon source
43190	5291 ChEBI	gelatin	-	hydrolysis
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
43190	24265 ChEBI	gluconate	+	carbon source
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
43190	5417 ChEBI	glucosamine	-	growth
43190	17234 ChEBI	glucose	+	carbon source
43190	17234 ChEBI	glucose	-	fermentation
43190	24297 ChEBI	glucuronate	-	growth
43190	29987 ChEBI	glutamate	-	growth
43190	28300 ChEBI	glutamine	-	growth
43190	15978 ChEBI	glycerol 3-phosphate	+	carbon source
43190	15428 ChEBI	glycine	-	growth
43190	29805 ChEBI	glycolate	-	growth
43190	36655 ChEBI	glyoxylate	-	growth
43190	32362 ChEBI	heptanoate	-	growth
43190	27570 ChEBI	histidine	-	growth
43190	24741 ChEBI	hydroxyproline	-	growth
43190	48944 ChEBI	isobutyrate	-	growth
43190	16087 ChEBI	isocitrate	-	growth
43190	24898 ChEBI	isoleucine	-	growth
43190	48942 ChEBI	isovalerate	-	growth
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
43190	24996 ChEBI	lactate	-	growth
43190	17716 ChEBI	lactose	+	carbon source
43190	6364 ChEBI	laminarin	-	growth
43190	25017 ChEBI	leucine	-	growth
43190	25094 ChEBI	lysine	-	growth
43190	25097 ChEBI	lyxose	-	growth
43190	25115 ChEBI	malate	-	growth
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
43190	15792 ChEBI	malonate	-	growth
43190	17306 ChEBI	maltose	+	carbon source
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
43190	29864 ChEBI	mannitol	-	growth
43190	37684 ChEBI	mannose	+	carbon source
43190	6731 ChEBI	melezitose	+	carbon source
43190	17790 ChEBI	methanol	-	growth
43190	16811 ChEBI	methionine	-	growth
43190	17268 ChEBI	myo-inositol	-	growth
43190	28037 ChEBI	N-acetylgalactosamine	+	carbon source
43190	506227 ChEBI	N-acetylglucosamine	-	growth
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
43190	32544 ChEBI	nicotinate	-	growth
43190	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
43190	25646 ChEBI	octanoate	-	growth
43190	18257 ChEBI	ornithine	-	growth
43190	16452 ChEBI	oxaloacetate	-	growth
43190		peptone	+	carbon source
43190	28044 ChEBI	phenylalanine	-	growth
43190	26271 ChEBI	proline	-	growth
43190	28831 ChEBI	propanol	-	growth
43190	17272 ChEBI	propionate	-	growth
43190	36241 ChEBI	protocatechuate	+	carbon source
43190	16634 ChEBI	raffinose	+	carbon source
43190	26546 ChEBI	rhamnose	-	growth
43190	15963 ChEBI	ribitol	-	growth
43190	17822 ChEBI	serine	-	growth
43190	36208 ChEBI	shikimate	-	growth
43190	32954 ChEBI	sodium acetate	-	growth
43190	50144 ChEBI	sodium pyruvate	+	carbon source
43190	30911 ChEBI	sorbitol	-	growth
43190	27922 ChEBI	sorbose	-	growth
43190	30031 ChEBI	succinate	-	growth
43190	17992 ChEBI	sucrose	+	carbon source
43190	30929 ChEBI	tartrate	-	growth
43190	26986 ChEBI	threonine	-	growth
43190	27082 ChEBI	trehalose	+	carbon source
43190		trimethoxybenzoate	-	growth
43190	27897 ChEBI	tryptophan	-	growth
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
43190	53426 ChEBI	tween 80	-	growth
43190	18186 ChEBI	tyrosine	-	growth
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
43190	27266 ChEBI	valine	-	growth
43190	17151 ChEBI	xylitol	-	growth
43190	18222 ChEBI	xylose	+	carbon source
43190		yeast extract	+	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
43190	28971	ampicillin	10 µg (disc)
43190	161680	aztreonam	30 µg (disc)
43190	124991	cefalotin	30 µg (disc)
43190	474053	cefazolin	30 µg (disc)
43190	204928	cefotaxime	30 µg (disc)
43190	17698	chloramphenicol	30 µg (disc)
43190	48923	erythromycin	15 µg (disc)
43190	28915	fosfomycin	50 µg (disc)
43190	471744	imipenem	10 µg (disc)
43190	63607	linezolid	30 µg (disc)
43190	6919	mezlocillin	30 µg (disc)
43190	63611	moxifloxacin	5 µg (disc)
43190	7507	neomycin	30 µg (disc)
43190	71415	nitrofurantoin	100 µg (disc)
43190	100246	norfloxacin	10 µg (disc)
43190	7660	nystatin	100 Unit (disc)
43190	7731	ofloxacin	5 µg (disc)
43190	7809	oxacillin	5 µg (disc)
43190	18208	penicillin g	10 Unit (disc)
43190	75250	pipemidic acid	20 µg (disc)
43190	9587	ticarcillin	75 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43190	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
43190	acid phosphatase	+	3.1.3.2
43190	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
43190	alpha-chymotrypsin	+	3.4.21.1
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
43190	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
43190	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
43190	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
43190	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
43190	arginine dihydrolase	-	3.5.3.6
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
43190	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
43190	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
43190	catalase	+	1.11.1.6
43190	cystine arylamidase	-	3.4.11.3
68382	cystine arylamidase	-	3.4.11.3	from API zym
43190	cytochrome oxidase	-	1.9.3.1
43190	esterase (C 4)	+
68382	esterase (C 4)	-		from API zym
43190	esterase Lipase (C 8)	+
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
43190	leucine arylamidase	+	3.4.11.1
43190	lipase	-
68382	lipase (C 14)	-		from API zym
43190	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
43190	naphthol-AS-BI-phosphohydrolase	+
43190	trypsin	+	3.4.21.4
43190	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
43190	valine arylamidase	-
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	palmitate biosynthesis	100	22 of 22
66794	3-chlorocatechol degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	lactate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	starch degradation	100	10 of 10
66794	ubiquinone biosynthesis	100	7 of 7
66794	sulfopterin metabolism	100	4 of 4
66794	quinate degradation	100	2 of 2
66794	Entner Doudoroff pathway	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	methionine metabolism	88.46	23 of 26
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	purine metabolism	86.17	81 of 94
66794	heme metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	degradation of sugar acids	84	21 of 25
66794	degradation of hexoses	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	alanine metabolism	82.76	24 of 29
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipid metabolism	80.65	25 of 31
66794	cellulose degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	degradation of pentoses	78.57	22 of 28
66794	tyrosine metabolism	78.57	11 of 14
66794	citric acid cycle	78.57	11 of 14
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	butanoate fermentation	75	3 of 4
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	d-xylose degradation	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	vitamin B1 metabolism	69.23	9 of 13
66794	histidine metabolism	68.97	20 of 29
66794	degradation of sugar alcohols	68.75	11 of 16
66794	tryptophan metabolism	68.42	26 of 38
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	nitrate assimilation	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	polyamine pathway	65.22	15 of 23
66794	glutathione metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	urea cycle	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	aclacinomycin biosynthesis	57.14	4 of 7
66794	lysine metabolism	57.14	24 of 42
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	phenol degradation	55	11 of 20
66794	ascorbate metabolism	54.55	12 of 22
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	oxidative phosphorylation	51.65	47 of 91
66794	toluene degradation	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	androgen and estrogen metabolism	50	8 of 16
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	catecholamine biosynthesis	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	sphingosine metabolism	50	3 of 6
66794	alginate biosynthesis	50	2 of 4
66794	biotin biosynthesis	50	2 of 4
66794	myo-inositol biosynthesis	50	5 of 10
66794	vitamin E metabolism	50	2 of 4
66794	grixazone biosynthesis	50	1 of 2
66794	cholesterol biosynthesis	45.45	5 of 11
66794	elloramycin biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	bacilysin biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	carotenoid biosynthesis	36.36	8 of 22
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	vitamin B12 metabolism	23.53	8 of 34

Fatty acid profile

Metadata FA analysis

@ref

43190

Fatty acid	Percentage
C15:0 iso	30.3
C16:1ω6c / C16:1ω7c	18.4
C18:1ω9c	17.1
C17:1 iso ω9c	15.7
C17:0 iso	5
C18:0	2.8
C16:0	2.2

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
42882	-	+	-	-	-	+/-	-	-	+/-	-	+/-	+/-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
42882	+	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Grassland
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
42882	mown pasture grassland soil	Thuringia, Hainich-Dün region close to Mühlhausen (51° 12' 53.971'' N 10° 23' 27.992'' E)	Germany	DEU	Europe	51.215	10.3911 51.215/10.3911
43190	soil sample from a temperate grassland soil	Mühlhausen, Thuringia	Germany	DEU	Europe	51	10 51/10	SSE/HP (pH 7.0) plates	soil solution equivalent (SSE), supplemented with peptone, yeast extract, vitamin solution, trace element solution, 0.8 % (w/v) gellan gum	4 months	room temperature	serial dilution, darkness
67771	From soil, Grassland soil from Heinich-Dun	Thuringen	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KT287072 (>99% sequence identity) for Luteitalea pratensis subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	353
Animal Samples	90
Plant Samples	56
Total Samples	543

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42882	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM161886v1 assembly for Luteitalea pratensis DSM 100886; HEG_-6_39	complete	GCA_001618865	1855912.4	2687453111	1855912	95.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42882	Luteitalea pratensis strain HEG_-6_39 16S ribosomal RNA gene, partial sequence	KT287072	1506		1855912

GC content

@ref	GC-content (mol%)	Method
43190	64.7	genome sequence analysis
42882	64.7	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Luteitalea pratensis DSM 100886
IMG: 2687453111

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.80	no
125439	motility	BacteriaNetⓘ	no	55.10	no
125439	gram_stain	BacteriaNetⓘ	negative	73.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Luteitalea pratensis DSM 100886
NCBI: GCA_001618865.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.78	yes
125438	anaerobic	anaerobicⓘ	no	88.18	yes
125438	aerobic	aerobicⓘ	yes	76.64	yes
125438	spore-forming	spore-formingⓘ	no	74.28	yes
125438	thermophilic	thermophileⓘ	no	91.27	no
125438	flagellated	motile2+ⓘ	no	55.66	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Oxford Nanopore long read-based shotgun metagenomic data sets of simulated bacterial communities originating from fresh spinach and surface water.	Chen Z, Grim CJ, Ramachandran P, Meng J.	Microbiol Resour Announc	10.1128/mra.00586-24	2024
Genetics	Illumina short read-based shotgun metagenomic data sets of simulated bacterial communities derived from fresh spinach and surface water.	Chen Z, Meng J.	Microbiol Resour Announc	10.1128/mra.00375-24	2024
	Evolution of Phage Tail Sheath Protein.	Evseev P, Shneider M, Miroshnikov K.	Viruses	10.3390/v14061148	2022
Phylogeny	Luteitalea pratensis gen. nov., sp. nov. a new member of subdivision 6 Acidobacteria isolated from temperate grassland soil.	Vieira S, Luckner M, Wanner G, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001827	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42882	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100886
#43190	Selma Vieira, Manja Luckner, Gerhard Wanner, Jörg Overmann: Luteitalea pratensis gen. nov., sp. nov. a new member of subdivision 6 Acidobacteria isolated from temperate grassland soil. IJSEM 67: 1408 - 1414 2017 ( DOI 10.1099/ijsem.0.001827 , PubMed 28141504 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Luteitalea pratensis (DSM 100886, KCTC 52215, HEG_-6_39)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Fatty acid profile?

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001618865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Fatty acid profile