Name: Ileibacterium valens NYU-BL-A3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140269

Type strain:

Species: Ileibacterium valens

Strain Designation: NYU-BL-A3

Culture col. no.: DSM 103668, ATCC TSD-63

Strain history: <- L. Cox, NYU Langone Medical Center, New York, USA; NYU-BL-A3 <- L. Cox {2014}

NCBI tax ID(s): 1862668 (species)

SI-ID 406729

DSM 103668

Section

Ileibacterium valens NYU-BL-A3 is an anaerobe, thermophilic, Gram-positive bacterium that was isolated from murine intestine.

Gram-positive
rod-shaped
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Erysipelotrichia*
	Order	*Erysipelotrichales*
	Family	*Erysipelotrichaceae*
	Genus	*Ileibacterium*
	Species	**Ileibacterium valens**
	Full Scientific Name (LPSN)	Ileibacterium valens Cox et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43179]	Gram stain	positive

[Ref.: #43179]	Cell shape	rod-shaped

[Ref.: #43179]	Motility	no

[Ref.: #43179]	Colony size	0.5 mm
[Ref.: #43179]	Colony color	grey
[Ref.: #43179]	Incubation period	1 day
[Ref.: #43179]	Cultivation medium used	Brucella agar

[Ref.: #43179]	Colony size	2-3 mm
[Ref.: #43179]	Colony color	grey
[Ref.: #43179]	Incubation period	2-3 days
[Ref.: #43179]	Cultivation medium used	Brucella agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Brucella agar

[Ref.: #43179]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

MTGE (Anaerobe Systems, Morgan Hill, CA)

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Culture medium growth

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Culture medium

CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #42876]

Culture medium composition

expand / minimize

[Ref.: #43179]

Culture medium

Brucella broth

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Culture medium growth

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Culture medium

chopped meat broth

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Culture medium growth

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Culture medium

thioglcolate broth

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #42876]		growth	37 °C
[Ref.: #43179]	no	growth	42 °C
[Ref.: #43179]		growth	30 °C
[Ref.: #43179]		optimum	37 °C

[Ref.: #42876]	Temperature range	mesophilic
[Ref.: #43179]	Temperature range	thermophilic
[Ref.: #43179]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43179]

Oxygen tolerance

anaerobe

[Ref.: #43179]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43179]	D-mannose ChEBI	+/-	assimilation
[Ref.: #43179]	nitrate ChEBI	-	reduction
[Ref.: #43179]	raffinose ChEBI	+/-	assimilation

	Metabolite production	Metabolite	Production
[Ref.: #43179]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43179]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #43179]	alanine arylamidase	-	3.4.11.2
[Ref.: #43179]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43179]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #43179]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43179]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43179]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #43179]	arginine arylamidase	-
[Ref.: #43179]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43179]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43179]	beta-glucosidase	+	3.2.1.21
[Ref.: #43179]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43179]	catalase	-	1.11.1.6
[Ref.: #43179]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #43179]	glutamyl-glutamate arylamidase	-
[Ref.: #43179]	glycin arylamidase	-
[Ref.: #43179]	histidine arylamidase	-
[Ref.: #43179]	leucine aminopeptidase	-	3.4.1.1
[Ref.: #43179]	leucine arylamidase	-	3.4.11.1
[Ref.: #43179]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #43179]	lipase	-
[Ref.: #43179]	N-acetyl-beta-glucosaminidase	+/-	3.2.1.52
[Ref.: #43179]	phenylalanine arylamidase	-
[Ref.: #43179]	proline-arylamidase	-	3.4.11.5
[Ref.: #43179]	pyroglutamic acid arylamidase	-
[Ref.: #43179]	serine arylamidase	-
[Ref.: #43179]	tyrosine arylamidase	-
[Ref.: #43179]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43179]

Fatty acid	Percentage
C16:0	34.2
C18:0	18.9
C18:1ω9c	9.4
C14:0	6
C12:0	4.9
C10:0	4.5
C17:0	3.4
C18:2ω6,9c / anteiso-C18:0	2.8
C15:0	2.8
C9:0	2.6
C11:0	2.3
C13:0	2.2

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	palmitate biosynthesis	77.27	17 of 22
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	photosynthesis	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	NAD metabolism	66.67	12 of 18
[Ref.: #66794]	glutamate and glutamine metabolism	64.29	18 of 28
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	gluconeogenesis	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	purine metabolism	57.45	54 of 94
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	alanine metabolism	55.17	16 of 29
[Ref.: #66794]	oxidative phosphorylation	54.95	50 of 91
[Ref.: #66794]	pyrimidine metabolism	53.33	24 of 45
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	methionine metabolism	50	13 of 26
[Ref.: #66794]	tetrahydrofolate metabolism	50	7 of 14
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	vitamin B1 metabolism	46.15	6 of 13
[Ref.: #66794]	leucine metabolism	46.15	6 of 13
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	isoprenoid biosynthesis	46.15	12 of 26
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	lipid metabolism	41.94	13 of 31
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	lysine metabolism	40.48	17 of 42
[Ref.: #66794]	degradation of sugar acids	40	10 of 25
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	non-pathway related	39.47	15 of 38
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	heme metabolism	35.71	5 of 14
[Ref.: #66794]	tyrosine metabolism	35.71	5 of 14
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	aclacinomycin biosynthesis	28.57	2 of 7
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	25	2 of 8
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	biotin biosynthesis	25	1 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42876]	Sample type/isolated from	murine intestine
[Ref.: #42876]	Geographic location (country and/or sea, region)	New York City
[Ref.: #42876]	Country	USA
[Ref.: #42876]	Country ISO 3 Code	USA
[Ref.: #42876]	Continent	North America
[Ref.: #42876]	Geographic location	40.7371°/-73.9768°

[Ref.: #43179]	Sample type/isolated from	murine intestinal contents
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU744404 (>99% sequence identity) for Ileibacterium valens subclade from Microbeatlas

Aquatic Samples	873
Soil Samples	750
Animal Samples	23791
Plant Samples	250
Total Samples	25664

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42876]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42876]	Ileibacterium valens strain NYU-BL-A3 16S ribosomal RNA gene, partial sequence	KU744404	1459	ENA	1862668 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ileibacterium valens NYU-BL-A3	GCA_001945525	contig	GenBank	1862668 tax ID	*
[Ref.: #66792]	Ileibacterium valens NYU-BL-A3	2788500240	draft	JGI IMG/M	1862668 tax ID	*

[Ref.: #43179]	GC-content	41.1 mol%	genome sequence analysis
[Ref.: #42876]	GC-content	41.1 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #42876]

Culture collection no.

DSM 103668, ATCC TSD-63

[Ref.: #96575]

SI-ID 406729

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of two novel members of the family Erysipelotrichaceae: Ileibacterium valens gen. nov., sp. nov. and Dubosiella newyorkensis, gen. nov., sp. nov., from the murine intestine, and emendation to the description of Faecalibaculum rodentium.	Cox LM, Sohn J, Tyrrell KL, Citron DM, Lawson PA, Patel NB, Iizumi T, Perez-Perez GI, Goldstein EJC, Blaser MJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001793	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42876

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103668

#43179

Laura M. Cox, Jiho Sohn, Kerin L. Tyrrell, Diane M. Citron, Paul A. Lawson, Nisha B. Patel, Tadasu Iizumi, Guillermo I. Perez-Perez, Ellie J. C. Goldstein, Martin J. Blaser: Description of two novel members of the family Erysipelotrichaceae: Ileibacterium valens gen. nov., sp. nov. And Dubosiella newyorkensis, gen. nov., sp. nov., from the murine intestine, and emendation to the description of Faecalibacterium rodentium. IJSEM 67: 1247 - 1254 2017 ( DOI 10.1099/ijsem.0.001793 , PubMed 28100298 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96575

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406729.1 )

* These data were automatically processed and therefore are not curated

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