Name: Polycyclovorans algicola TG408
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140251

Type strain:

Species: Polycyclovorans algicola

Strain Designation: TG408

Culture col. no.: DSM 24974, ATCC BAA-2242, KCTC 23940

Strain history: <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom; TG408 <- T. Gutierrez

NCBI tax ID(s): 616992 (species)

SI-ID 397859

DSM 24974

Section

Polycyclovorans algicola TG408 is a mesophilic bacterium that was isolated from marine algal culture Skeletonema costatum.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Nevskiales*
	Family	*Nevskiaceae*
	Genus	*Polycyclovorans*
	Species	**Polycyclovorans algicola**
	Full Scientific Name (LPSN)	Polycyclovorans algicola Gutierrez et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42858]

Culture medium

TG 408 MEDIUM (DSMZ Medium 1349)

[Ref.: #42858]

Culture medium growth

[Ref.: #42858]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42858]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42858]			growth	28 °C

[Ref.: #42858]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42858]	Sample type/isolated from	marine algal culture Skeletonema costatum
[Ref.: #42858]	Host species	Skeletonema costatum
[Ref.: #42858]	Geographic location (country and/or sea, region)	North Sea
[Ref.: #42858]	Country	United Kingdom
[Ref.: #42858]	Country ISO 3 Code	GBR
[Ref.: #42858]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Algae	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ176554 (>99% sequence identity) for Polycyclovorans algicola subclade from Microbeatlas

Aquatic Samples	1378
Soil Samples	118
Animal Samples	95
Plant Samples	25
Total Samples	1616

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42858]	Polycyclovorans algicola strain TG408 16S ribosomal RNA gene, partial sequence	FJ176554	1494	ENA	1415779 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polycyclovorans algicola TG408	GCA_000711245	contig	GenBank	1415779 tax ID	*
[Ref.: #66792]	Polycyclovorans algicola TG408	1415779.3	wgs	PATRIC	1415779 tax ID	*
[Ref.: #66792]	Polycyclovorans algicola TG408	2571042918	draft	JGI IMG/M	1415779 tax ID	*

[Ref.: #42858]

GC-content

64.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Polycyclovorans algicola TG408 PATRIC: 1415779.3
[Ref.: #69480]	motile	yes	86.255	no
[Ref.: #69480]	gram-positive	no	98.578	no
[Ref.: #69480]	anaerobic	no	97.802	no
[Ref.: #69480]	halophile	no	80.662	no
[Ref.: #69480]	spore-forming	no	94.922	no
[Ref.: #69480]	glucose-util	no	51.75	no
[Ref.: #69480]	thermophile	no	94.444	yes
[Ref.: #69480]	aerobic	yes	92.758	no
[Ref.: #69480]	flagellated	yes	57.789	no
[Ref.: #69480]	glucose-ferment	no	93.273	no

Availability in culture collections External links

[Ref.: #42858]

Culture collection no.

DSM 24974, ATCC BAA-2242, KCTC 23940

[Ref.: #96559]

SI-ID 397859

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flagellatimonas centrodinii gen. nov., sp. nov., a novel member of the family Nevskiaceae isolated from toxin-producing dinoflagellate Centrodinium punctatum.	Jiang Y, Jiang L, Peng Y, Kim KH, Shin HH, Kim YM, Lee J, Li Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005084	2021	*
Genetics	Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.	Gutierrez T, Thompson HF, Angelova A, Whitman WB, Huntemann M, Copeland A, Chen A, Kyrpides N, Markowitz V, Palaniappan K, Ivanova N, Mikhailova N, Ovchinnikova G, Andersen E, Pati A, Stamatis D, Reddy TB, Ngan CY, Chovatia M, Daum C, Shapiro N, Cantor MN, Woyke T	Genome Announc	10.1128/genomeA.00207-15	2015	*
Phylogeny	Polycyclovorans algicola gen. nov., sp. nov., an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton.	Gutierrez T, Green DH, Nichols PD, Whitman WB, Semple KT, Aitken MD	Appl Environ Microbiol	10.1128/AEM.02833-12	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42858

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24974

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96559

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397859.1 )

* These data were automatically processed and therefore are not curated

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