Name: Streptococcus pantholopis TA 26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140230

Type strain:

Species: Streptococcus pantholopis

Strain Designation: TA 26, TA26

Culture col. no.: DSM 102135, CGMCC 1.15667

Strain history: <- X. Bai, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; TA26

NCBI tax ID(s): 1811193 (species)

Section

Streptococcus pantholopis TA 26 is a facultative anaerobe, psychrophilic, Gram-positive bacterium that was isolated from fresh faeces of a Tibetan antelope .

coccus-shaped
Gram-positive
facultative anaerobe
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus pantholopis**
	Full Scientific Name (PNU)	Streptococcus pantholopis Bai et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43135]	Gram stain	positive
[Ref.: #43135]	Cell width	0.4-0.7 µm
[Ref.: #43135]	Cell shape	coccus-shaped
[Ref.: #43135]	Motility	no

[Ref.: #43135]	Type of hemolysis	alpha
[Ref.: #43135]	Colony size	0.75-1.00 mm
[Ref.: #43135]	Incubation period	2 days
[Ref.: #43135]	Cultivation medium used	Blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43135]

Culture medium

Blood agar

[Ref.: #43135]

Culture medium growth

[Ref.: #42837]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #42837]

Culture medium growth

[Ref.: #42837]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #42837]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #42837]		growth	37 °C
[Ref.: #43135]	no	growth	15 °C
[Ref.: #43135]	no	growth	4 °C
[Ref.: #43135]		growth	42 °C
[Ref.: #43135]		growth	37 °C
[Ref.: #43135]		growth	30 °C
[Ref.: #43135]		growth	22 °C

[Ref.: #42837]	Temperature range	mesophilic
[Ref.: #43135]	Temperature range	psychrophilic
[Ref.: #43135]	Temperature range	thermophilic
[Ref.: #43135]	Temperature range	mesophilic
[Ref.: #43135]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43135]

Oxygen tolerance

facultative anaerobe

[Ref.: #43135]	Type of spore	spore
[Ref.: #43135]	Ability of spore formation	no

	Salt	Tested relation		Salt conc.
[Ref.: #43135]	NaCl		growth	3.5	%(w/v)
[Ref.: #43135]	NaCl	no	growth	4.5	%(w/v)
[Ref.: #43135]	NaCl	no	growth	6.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43135]	2-oxogluconate	-	builds acid from
[Ref.: #43135]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43135]	amygdalin ChEBI	+	builds acid from
[Ref.: #43135]	arbutin ChEBI	+	builds acid from
[Ref.: #43135]	arginine ChEBI	-	hydrolysis
[Ref.: #43135]	cellobiose ChEBI	+	builds acid from
[Ref.: #43135]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43135]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43135]	D-fructose ChEBI	+	builds acid from
[Ref.: #43135]	D-fucose ChEBI	-	builds acid from
[Ref.: #43135]	D-galactose ChEBI	+	builds acid from
[Ref.: #43135]	D-glucose ChEBI	+	builds acid from
[Ref.: #43135]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43135]	D-mannose ChEBI	+	builds acid from
[Ref.: #43135]	D-ribose ChEBI	-	builds acid from
[Ref.: #43135]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43135]	D-xylose ChEBI	-	builds acid from
[Ref.: #43135]	erythritol ChEBI	-	builds acid from
[Ref.: #43135]	esculin ChEBI	+	hydrolysis
[Ref.: #43135]	galactitol ChEBI	-	builds acid from
[Ref.: #43135]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43135]	gluconate ChEBI	-	builds acid from
[Ref.: #43135]	glycerol ChEBI	-	builds acid from
[Ref.: #43135]	glycogen ChEBI	-	builds acid from
[Ref.: #43135]	hippurate ChEBI	+	hydrolysis
[Ref.: #43135]	inulin ChEBI	-	builds acid from
[Ref.: #43135]	inulin ChEBI	-	fermentation
[Ref.: #43135]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43135]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43135]	L-fucose ChEBI	-	builds acid from
[Ref.: #43135]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43135]	L-xylose ChEBI	-	builds acid from
[Ref.: #43135]	lactose ChEBI	+	builds acid from
[Ref.: #43135]	lactose ChEBI	+	fermentation
[Ref.: #43135]	maltose ChEBI	+	builds acid from
[Ref.: #43135]	maltose ChEBI	+	fermentation
[Ref.: #43135]	mannitol ChEBI	+	builds acid from
[Ref.: #43135]	mannitol ChEBI	+	fermentation
[Ref.: #43135]	melezitose ChEBI	-	builds acid from
[Ref.: #43135]	melibiose ChEBI	-	builds acid from
[Ref.: #43135]	melibiose ChEBI	-	fermentation
[Ref.: #43135]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43135]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43135]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43135]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43135]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43135]	raffinose ChEBI	-	builds acid from
[Ref.: #43135]	raffinose ChEBI	-	fermentation
[Ref.: #43135]	ribitol ChEBI	-	builds acid from
[Ref.: #43135]	salicin ChEBI	+	builds acid from
[Ref.: #43135]	sorbitol ChEBI	+	builds acid from
[Ref.: #43135]	sorbitol ChEBI	+	fermentation
[Ref.: #43135]	starch ChEBI	-	builds acid from
[Ref.: #43135]	sucrose ChEBI	+	builds acid from
[Ref.: #43135]	trehalose ChEBI	+	builds acid from
[Ref.: #43135]	trehalose ChEBI	+	fermentation
[Ref.: #43135]	turanose ChEBI	-	builds acid from
[Ref.: #43135]	urea ChEBI	+	hydrolysis
[Ref.: #43135]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #43135]		acetoin ChEBI

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43135]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43135]	acid phosphatase	-	3.1.3.2
[Ref.: #43135]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43135]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43135]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43135]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43135]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43135]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43135]	beta-galactosidase	-	3.2.1.23
[Ref.: #43135]	beta-glucosidase	+	3.2.1.21
[Ref.: #43135]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43135]	catalase	-	1.11.1.6
[Ref.: #43135]	cystine arylamidase	-	3.4.11.3
[Ref.: #43135]	esterase (C 4)	-
[Ref.: #43135]	esterase Lipase (C 8)	-
[Ref.: #43135]	leucine arylamidase	+	3.4.11.1
[Ref.: #43135]	lipase (C 14)	-
[Ref.: #43135]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43135]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43135]	trypsin	-	3.4.21.4
[Ref.: #43135]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43135]

Fatty acid	Percentage
C16:0	32.09
C18:1ω9c	17.96
C14:0	12.97
C18:2ω6,9c / anteiso-C18:0	12.1
C18:1ω7c / C18:1ω6c	9.68
C18:0	7.31
C16:1ω9c	4.1
C16:1ω7c / C16:1ω6c	2.01
C17:0	1.07
C12:0	0.7

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	peptidoglycan biosynthesis	93.33	14 of 15
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	NAD metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	serine metabolism	55.56	5 of 9
[Ref.: #66794]	tryptophan metabolism	55.26	21 of 38
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	tetrahydrofolate metabolism	50	7 of 14
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	lipid metabolism	48.39	15 of 31
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	lysine metabolism	42.86	18 of 42
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	degradation of pentoses	42.86	12 of 28
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	methylglyoxal degradation	40	2 of 5
[Ref.: #66794]	degradation of hexoses	38.89	7 of 18
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	citric acid cycle	35.71	5 of 14
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	flavin biosynthesis	33.33	5 of 15
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	degradation of sugar acids	28	7 of 25
[Ref.: #66794]	isoprenoid biosynthesis	26.92	7 of 26
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	25	3 of 12
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	heme metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42837]	Sample type/isolated from	fresh faeces of a Tibetan antelope (Pantholops hodgsonii)
[Ref.: #42837]	Host species	Pantholops hodgsonii
[Ref.: #42837]	Geographic location (country and/or sea, region)	Qinghai, Hoh Xil Nat. Nature Reserve (35° 36' N 93° 44' E at an altitude of 4514.4 m )
[Ref.: #42837]	Country	China
[Ref.: #42837]	Country ISO 3 Code	CHN
[Ref.: #42837]	Continent	Asia
[Ref.: #42837]	Geographic location	35.6000°/93.7333°

[Ref.: #43135]	Sample type/isolated from	fresh faecal samples of two Tibetan antelopes
[Ref.: #43135]	Geographic location (country and/or sea, region)	Hoh Xil National Nature Reserve, Qinghai, China
[Ref.: #43135]	Country	China
[Ref.: #43135]	Country ISO 3 Code	CHN
[Ref.: #43135]	Continent	Asia
[Ref.: #43135]	Geographic location	35.0000°/93.0000°
[Ref.: #43135]	Isolation date	2014-05-13
* marker position based on {}

Isolation sources categories

#Host	#Mammals	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU877326 (>99% sequence identity) for Streptococcus pantholopis subclade from Microbeatlas

Aquatic Samples	474
Soil Samples	226
Animal Samples	11468
Plant Samples	152
Total Samples	12320

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42837]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42837]	Streptococcus pantholopis strain TA 26 16S ribosomal RNA gene, complete sequence	KU877326	1545	ENA	1811193 tax ID

[Ref.: #43135]	GC-content	42 mol%
[Ref.: #42837]	GC-content	42 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #42837]

Culture collection no.

DSM 102135, CGMCC 1.15667

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus chenjunshii sp. nov. isolated from feces of Tibetan antelopes.	Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Bai XN, Wu XM, Li J, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003303	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42837

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102135

#43135

Xiangning Bai, Yanwen Xiong, Shan Lu, Dong Jin, Xinhe Lai, Jing Yang, Lina Niu, Shoukui Hu, Xiangli Meng, Ji Pu, Changyun Ye and Jianguo Xu: Streptococcus pantholopis sp. nov., isolated from faeces of the Tibetan antelope (Pantholops hodgsonii). IJSEM 66: 3281 - 3286 2016 ( DOI 10.1099/ijsem.0.001189 , PubMed 27226124 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

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