Name: Aequorivita aquimaris D-24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140229

Type strain:

Species: Aequorivita aquimaris

Strain Designation: D-24

Culture col. no.: DSM 101732, KCTC 42708

Strain history: <- Chong Chun Shiong, Universiti Teknologi Malaysia

NCBI tax ID(s): 1548749 (species)

SI-ID 397695

DSM 101732

Section

Aequorivita aquimaris D-24 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from Seawater .

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aequorivita*
	Species	**Aequorivita aquimaris**
	Full Scientific Name (LPSN)	Aequorivita aquimaris (Thevarajoo et al. 2016) García-López et al. 2020

	Synonym	Aequorivita aquimaris
	Synonym	Vitellibacter aquimaris

Information on morphological and physiological properties Morphology

[Ref.: #43132]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43132]	Cell length	1.1-1.7 µm

[Ref.: #43132]	Cell width	0.4-0.5 µm

[Ref.: #43132]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43132]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43132]	Colony size	1-2 mm
[Ref.: #43132]	Colony color	yellow-orange
[Ref.: #43132]	Colony shape	circular
[Ref.: #43132]	Incubation period	2 days
[Ref.: #43132]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43132]

Culture medium

Marine agar (MA)

[Ref.: #43132]

Culture medium growth

[Ref.: #42836]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42836]

Culture medium growth

[Ref.: #42836]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42836]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42836]	growth	37 °C
[Ref.: #43132]	optimum	37 °C
[Ref.: #43132]	growth	4-43 °C
[Ref.: #67771]	growth	37 °C

[Ref.: #42836]	Temperature range	mesophilic
[Ref.: #43132]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43132]			optimum	7.0-8.0
[Ref.: #43132]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43132]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43132]		NaCl		growth	0-9	%(w/v)
[Ref.: #43132]		NaCl		optimum	2-6	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43132]	amygdalin ChEBI	-	builds acid from
[Ref.: #43132]	arbutin ChEBI	-	builds acid from
[Ref.: #43132]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43132]	casein	+	hydrolysis
[Ref.: #43132]	cellobiose ChEBI	-	builds acid from
[Ref.: #43132]	citrate ChEBI	-	assimilation
[Ref.: #43132]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43132]	D-fructose ChEBI	-	builds acid from
[Ref.: #43132]	D-fucose ChEBI	-	builds acid from
[Ref.: #43132]	D-galactose ChEBI	-	builds acid from
[Ref.: #43132]	D-glucose ChEBI	-	builds acid from
[Ref.: #43132]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43132]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43132]	D-mannose ChEBI	-	builds acid from
[Ref.: #43132]	D-ribose ChEBI	-	builds acid from
[Ref.: #43132]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43132]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43132]	D-xylose ChEBI	-	builds acid from
[Ref.: #43132]	dextrin ChEBI	+	hydrolysis
[Ref.: #43132]	esculin ferric citrate	+	builds acid from
[Ref.: #43132]	galactitol ChEBI	-	builds acid from
[Ref.: #43132]	gelatin ChEBI	+	hydrolysis
[Ref.: #43132]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43132]	glycerol ChEBI	-	builds acid from
[Ref.: #43132]	glycogen ChEBI	+	hydrolysis
[Ref.: #43132]	glycogen ChEBI	-	builds acid from
[Ref.: #43132]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43132]	inulin ChEBI	-	builds acid from
[Ref.: #43132]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43132]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43132]	L-fucose ChEBI	-	builds acid from
[Ref.: #43132]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43132]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43132]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43132]	L-xylose ChEBI	-	builds acid from
[Ref.: #43132]	lactose ChEBI	-	builds acid from
[Ref.: #43132]	magnesium(2+) ChEBI	-	required for growth
[Ref.: #43132]	maltose ChEBI	-	builds acid from
[Ref.: #43132]	melezitose ChEBI	-	builds acid from
[Ref.: #43132]	melibiose ChEBI	-	builds acid from
[Ref.: #43132]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43132]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43132]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43132]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43132]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43132]	nitrate ChEBI	-	reduction
[Ref.: #43132]	potassium 2-dehydro-D-gluconate	+	builds acid from
[Ref.: #43132]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43132]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43132]	raffinose ChEBI	-	builds acid from
[Ref.: #43132]	ribitol ChEBI	-	builds acid from
[Ref.: #43132]	salicin ChEBI	-	builds acid from
[Ref.: #43132]	starch ChEBI	-	hydrolysis
[Ref.: #43132]	starch ChEBI	-	builds acid from
[Ref.: #43132]	sucrose ChEBI	-	builds acid from
[Ref.: #43132]	trehalose ChEBI	-	builds acid from
[Ref.: #43132]	turanose ChEBI	-	builds acid from
[Ref.: #43132]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43132]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43132]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43132]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43132]	urea ChEBI	-	hydrolysis
[Ref.: #43132]	xanthine ChEBI	-	hydrolysis
[Ref.: #43132]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43132]	ampicillin ChEBI	yes	10	µg
[Ref.: #43132]	bacitracin ChEBI				yes	45	µg
[Ref.: #43132]	chloramphenicol ChEBI	yes	100	µg
[Ref.: #43132]	erythromycin ChEBI	yes	60	µg
[Ref.: #43132]	gentamicin ChEBI				yes	10	µg
[Ref.: #43132]	kanamycin ChEBI				yes	50	µg
[Ref.: #43132]	lincomycin ChEBI	yes	30	µg
[Ref.: #43132]	neomycin ChEBI				yes	30	µg
[Ref.: #43132]	novobiocin ChEBI	yes	5	µg
[Ref.: #43132]	oleandomycin ChEBI	yes	15	µg
[Ref.: #43132]	penicillin g ChEBI	yes	10	Unit
[Ref.: #43132]	polymyxin b ChEBI				yes	300	Unit
[Ref.: #43132]	streptomycin ChEBI				yes	10	µg
[Ref.: #43132]	tetracycline ChEBI				yes	45	µg
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43132]		hydrogen sulfide ChEBI	no
[Ref.: #43132]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43132]	acid phosphatase	+	3.1.3.2
[Ref.: #43132]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43132]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43132]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43132]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43132]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43132]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43132]	beta-galactosidase	-	3.2.1.23
[Ref.: #43132]	beta-glucosidase	-	3.2.1.21
[Ref.: #43132]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43132]	catalase	+	1.11.1.6
[Ref.: #43132]	cystine arylamidase	+	3.4.11.3
[Ref.: #43132]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43132]	esterase (C 4)	+
[Ref.: #43132]	esterase Lipase (C 8)	+
[Ref.: #43132]	leucine arylamidase	+	3.4.11.1
[Ref.: #43132]	lipase (C 14)	-
[Ref.: #43132]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43132]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43132]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43132]

Fatty acid	Percentage
C15:0 iso	27.89
C17:0 iso 3OH	15.96
C17:1 iso ω9c	8.8
C15:0 iso 2OH / C16:1ω7c	6.85
C15:1 iso G	6.31
C15:0	5.24
C15:0 anteiso	5.08
C16:0 iso	4.45
C16:0 iso 3OH	2.76
C15:0 iso 3OH	2.6
C17:1ω6c	1.69
C14:0 iso	1.17
C15:0 2OH	1.14
C17:0 3OH	1.03
C17:0 2OH	0.88
C16:0	0.74
C13:0 iso	0.24
C17:0 iso	0.19
C15:1ω6c	0.17

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42836]	Sample type/isolated from	Seawater (01° 31.25' N 104 ° 16.05' E)
[Ref.: #42836]	Geographic location (country and/or sea, region)	Desaru shoreline in Johor
[Ref.: #42836]	Country	Malaysia
[Ref.: #42836]	Country ISO 3 Code	MYS
[Ref.: #42836]	Continent	Asia
[Ref.: #42836]	Geographic location	1.5208°/104.2680°

[Ref.: #43132]	Sample type/isolated from	seawater samples
[Ref.: #43132]	Sampling date	2013-12
[Ref.: #43132]	Geographic location (country and/or sea, region)	Desaru, Johor, Malaysia
[Ref.: #43132]	Country	Malaysia
[Ref.: #43132]	Country ISO 3 Code	MYS
[Ref.: #43132]	Continent	Asia
[Ref.: #43132]	Geographic location	1.0000°/104.0000°

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Desaru shoreline in Johor
[Ref.: #67771]	Country	Malaysia
[Ref.: #67771]	Country ISO 3 Code	MYS
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM569673 (>99% sequence identity) for Aequorivita from Microbeatlas

Aquatic Samples	702
Soil Samples	138
Animal Samples	135
Plant Samples	22
Total Samples	997

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43132]	16S rRNA gene sequences	KM569673	1511	ENA	1548749 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Aequorivita aquimaris D-24	GCA_001573155	contig	GenBank	1548749 tax ID
[Ref.: #66792]	Aequorivita aquimaris D-24	2608642109	draft	JGI IMG/M	1548749 tax ID	*

[Ref.: #42836]	GC-content	40.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	40.6 mol%

Availability in culture collections External links

[Ref.: #42836]

Culture collection no.

DSM 101732, KCTC 42708

[Ref.: #96545]

SI-ID 397695

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequorivita iocasae sp. nov., a halophilic bacterium isolated from sediment collected at a cold seep field in the South China Sea.	Zhang H, Wang H, Cao L, Chen H, Zhong Z, Wang M, Lian C, Liu R, Zhou L, Li C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005199	2022	*
Phylogeny	Aequorivita sinensis sp. nov., isolated from sediment of the East China Sea, and reclassification of Vitellibacter todarodis as Aequorivita todarodis comb. nov. and Vitellibacter aquimaris as Aequorivita aquimaris comb. nov.	Wang Q, Cai SD, Liu J, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004174	2020	*
Genetics	Draft genome sequence of Vitellibacter aquimaris D-24(T) isolated from seawater.	Thevarajoo S, Selvaratnam C, Chan KG, Goh KM, Chong CS	Braz J Microbiol	10.1016/j.bjm.2017.03.013	2017	*
Phylogeny	Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater.	Thevarajoo S, Selvaratnam C, Goh KM, Hong KW, Chan XY, Chan KG, Chong CS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001248	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42836

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101732

#43132

Suganthi Thevarajoo, Chitra Selvaratnam, Kian Mau Goh, Kar Wai Hong, Xin Yue Chan, Kok-Gan Chan and Chun Shiong Chong: Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater. IJSEM 66: 3662 - 3668 2016 ( DOI 10.1099/ijsem.0.001248 , PubMed 27334651 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#96545

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397695.1 )

* These data were automatically processed and therefore are not curated

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