Aequorivita aquimaris (DSM 101732, KCTC 42708, D-24)

Name: Aequorivita aquimaris (DSM 101732, KCTC 42708, D-24)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140229

Type strain

Strain Designation D-24

Culture col. no. DSM 101732 KCTC 42708 D-24

NCBI tax ID(s) 1548749

Special Collections DSMZ KCTC Literature strains

History <- C.-S. Chong, Universiti Teknologi Malaysia; D-24 <- Chong Chun Shiong, Universiti Teknologi Malaysia

Links

Aequorivita aquimaris D-24 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Seawater .

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397695

KCTC 42708,DSM 101732

@ref 20215

Last LPSN update 2026-02-09 11:33:33

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aequorivita

Species Aequorivita aquimaris

Full scientific name Aequorivita aquimaris (Thevarajoo et al. 2016) García-López et al. 2020

Synonyms (3)

Aequorivita aquimaris
Vitellibacter aquimaris
Aequorivita aquimaris

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43132	negative	1.1-1.7 µm	0.4-0.5 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative				99.9

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43132	1-2 mm	yellow-orange	circular	2 days	MA

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43132	Marine agar (MA)
42836	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42836	positive	growth	37
43132	positive	optimum	37
43132	positive	growth	4-43
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
43132	positive	optimum	7.0-8.0
43132	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43132	aerobe
67771	aerobe
125439	obligate aerobe	98.2

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43132	NaCl	positive	growth	0-9 %(w/v)
43132	NaCl	positive	optimum	2-6 %(w/v)

Observation

67771

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43132	27613 ChEBI	amygdalin	-	builds acid from
43132	18305 ChEBI	arbutin	-	builds acid from
43132	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43132		casein	+	hydrolysis
43132	17057 ChEBI	cellobiose	-	builds acid from
43132	16947 ChEBI	citrate	-	assimilation
43132	18333 ChEBI	D-arabitol	-	builds acid from
43132	15824 ChEBI	D-fructose	-	builds acid from
43132	28847 ChEBI	D-fucose	-	builds acid from
43132	12936 ChEBI	D-galactose	-	builds acid from
43132	17634 ChEBI	D-glucose	-	builds acid from
43132	62318 ChEBI	D-lyxose	-	builds acid from
43132	16899 ChEBI	D-mannitol	-	builds acid from
43132	16024 ChEBI	D-mannose	-	builds acid from
43132	16988 ChEBI	D-ribose	-	builds acid from
43132	17924 ChEBI	D-sorbitol	-	builds acid from
43132	16443 ChEBI	D-tagatose	-	builds acid from
43132	65327 ChEBI	D-xylose	-	builds acid from
43132	23652 ChEBI	dextrin	+	hydrolysis
43132		esculin ferric citrate	+	builds acid from
43132	16813 ChEBI	galactitol	-	builds acid from
43132	5291 ChEBI	gelatin	+	hydrolysis
43132	28066 ChEBI	gentiobiose	-	builds acid from
43132	17754 ChEBI	glycerol	-	builds acid from
43132	28087 ChEBI	glycogen	+	hydrolysis
43132	28087 ChEBI	glycogen	-	builds acid from
43132	17368 ChEBI	hypoxanthine	-	hydrolysis
43132	15443 ChEBI	inulin	-	builds acid from
43132	30849 ChEBI	L-arabinose	-	builds acid from
43132	18403 ChEBI	L-arabitol	-	builds acid from
43132	18287 ChEBI	L-fucose	-	builds acid from
43132	62345 ChEBI	L-rhamnose	-	builds acid from
43132	17266 ChEBI	L-sorbose	-	builds acid from
43132	17895 ChEBI	L-tyrosine	+	hydrolysis
43132	65328 ChEBI	L-xylose	-	builds acid from
43132	17716 ChEBI	lactose	-	builds acid from
43132	18420 ChEBI	magnesium(2+)	-	required for growth
43132	17306 ChEBI	maltose	-	builds acid from
43132	6731 ChEBI	melezitose	-	builds acid from
43132	28053 ChEBI	melibiose	-	builds acid from
43132	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43132	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43132	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43132	17268 ChEBI	myo-inositol	-	builds acid from
43132	506227 ChEBI	N-acetylglucosamine	-	builds acid from
43132	17632 ChEBI	nitrate	-	reduction
43132		potassium 2-dehydro-D-gluconate	+	builds acid from
43132		potassium 5-dehydro-D-gluconate	+	builds acid from
43132	32032 ChEBI	potassium gluconate	-	builds acid from
43132	16634 ChEBI	raffinose	-	builds acid from
43132	15963 ChEBI	ribitol	-	builds acid from
43132	17814 ChEBI	salicin	-	builds acid from
43132	28017 ChEBI	starch	-	hydrolysis
43132	28017 ChEBI	starch	-	builds acid from
43132	17992 ChEBI	sucrose	-	builds acid from
43132	27082 ChEBI	trehalose	-	builds acid from
43132	32528 ChEBI	turanose	-	builds acid from
43132	53424 ChEBI	tween 20	+	hydrolysis
43132	53423 ChEBI	tween 40	+	hydrolysis
43132	53425 ChEBI	tween 60	+	hydrolysis
43132	53426 ChEBI	tween 80	-	hydrolysis
43132	16199 ChEBI	urea	-	hydrolysis
43132	15318 ChEBI	xanthine	-	hydrolysis
43132	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43132	28971	ampicillin	10 µg
43132	28669	bacitracin		45 µg
43132	17698	chloramphenicol	100 µg
43132	48923	erythromycin	60 µg
43132	17833	gentamicin		10 µg
43132	6104	kanamycin		50 µg
43132	6472	lincomycin	30 µg
43132	7507	neomycin		30 µg
43132	28368	novobiocin	5 µg
43132	16869	oleandomycin	15 µg
43132	18208	penicillin g	10 Unit
43132	8309	polymyxin b		300 Unit
43132	17076	streptomycin		10 µg
43132	27902	tetracycline		45 µg

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43132	16136 ChEBI	hydrogen sulfide
43132	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43132	acid phosphatase	+	3.1.3.2
43132	alkaline phosphatase	+	3.1.3.1
43132	alpha-chymotrypsin	+	3.4.21.1
43132	alpha-fucosidase	-	3.2.1.51
43132	alpha-galactosidase	-	3.2.1.22
43132	alpha-glucosidase	-	3.2.1.20
43132	alpha-mannosidase	-	3.2.1.24
43132	beta-galactosidase	-	3.2.1.23
43132	beta-glucosidase	-	3.2.1.21
43132	beta-glucuronidase	-	3.2.1.31
43132	catalase	+	1.11.1.6
43132	cystine arylamidase	+	3.4.11.3
43132	cytochrome oxidase	+	1.9.3.1
43132	esterase (C 4)	+
43132	esterase Lipase (C 8)	+
43132	leucine arylamidase	+	3.4.11.1
43132	lipase (C 14)	-
43132	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43132	naphthol-AS-BI-phosphohydrolase	+
43132	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43132

Fatty acid	Percentage
C15:0 iso	27.89
C17:0 iso 3OH	15.96
C17:1 iso ω9c	8.8
C15:0 iso 2OH / C16:1ω7c	6.85
C15:1 iso G	6.31
C15:0	5.24
C15:0 anteiso	5.08
C16:0 iso	4.45
C16:0 iso 3OH	2.76
C15:0 iso 3OH	2.6
C17:1ω6c	1.69
C14:0 iso	1.17
C15:0 2OH	1.14
C17:0 3OH	1.03
C17:0 2OH	0.88
C16:0	0.74
C13:0 iso	0.24
C17:0 iso	0.19
C15:1ω6c	0.17

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
42836	Seawater (01° 31.25' N 104 ° 16.05' E)		Desaru shoreline in Johor	Malaysia	MYS	Asia	1.5208	104.268 1.5208/104.268
43132	seawater samples	2013-12	Desaru, Johor, Malaysia	Malaysia	MYS	Asia	1	104 1/104
67771	From seawater		Desaru shoreline in Johor	Malaysia	MYS	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM569673 (>99% sequence identity) for Aequorivita from Microbeatlas

Aquatic Samples	702
Soil Samples	138
Animal Samples	135
Plant Samples	22
Total Samples	997

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67771	ASM157315v1 assembly for Aequorivita aquimaris D-24	contig	GCA_001573155	1548749.7	2608642109	1548749	59.89

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43132	Aequorivita aquimaris strain D-24 16S ribosomal RNA gene, partial sequence	KM569673	1511		1548749

GC content

@ref	GC-content (mol%)	Method
42836	40.6	high performance liquid chromatography (HPLC)
67771	40.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aequorivita aquimaris D-24
NCBI: GCA_001573155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	no	83.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Vitellibacter aquimaris D-24(T) isolated from seawater.	Thevarajoo S, Selvaratnam C, Chan KG, Goh KM, Chong CS	Braz J Microbiol	10.1016/j.bjm.2017.03.013	2017
Phylogeny	Aequorivita iocasae sp. nov., a halophilic bacterium isolated from sediment collected at a cold seep field in the South China Sea.	Zhang H, Wang H, Cao L, Chen H, Zhong Z, Wang M, Lian C, Liu R, Zhou L, Li C	Int J Syst Evol Microbiol	10.1099/ijsem.0.005199	2022
Phylogeny	Aequorivita sinensis sp. nov., isolated from sediment of the East China Sea, and reclassification of Vitellibacter todarodis as Aequorivita todarodis comb. nov. and Vitellibacter aquimaris as Aequorivita aquimaris comb. nov.	Wang Q, Cai SD, Liu J, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.004174	2020
Phylogeny	Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater.	Thevarajoo S, Selvaratnam C, Goh KM, Hong KW, Chan XY, Chan KG, Chong CS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001248	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42836	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101732
#43132	Suganthi Thevarajoo, Chitra Selvaratnam, Kian Mau Goh, Kar Wai Hong, Xin Yue Chan, Kok-Gan Chan and Chun Shiong Chong: Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater. IJSEM 66: 3662 - 3668 2016 ( DOI 10.1099/ijsem.0.001248 , PubMed 27334651 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aequorivita aquimaris (DSM 101732, KCTC 42708, D-24)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001573155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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