Name: Algoriphagus roseus W29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140228

Type strain:

Species: Algoriphagus roseus

Strain Designation: W29

Culture col. no.: DSM 100160, KCTC 42940, MCC 2876

Strain history: <- Rup Lal, Univ. of Delhi

NCBI tax ID(s): 1649265 (species)

Section

Algoriphagus roseus W29 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from hexachlorocyclohexane contaminated dumpsite soil.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus roseus**
	Full Scientific Name (LPSN)	Algoriphagus roseus Kohli et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43131]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #43131]	Cell length	0.8-1.5 µm

[Ref.: #43131]	Cell width	0.3-0.5 µm

[Ref.: #43131]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #43131]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #43131]	Colony color	reddish-pink
[Ref.: #43131]	Colony shape	circular
[Ref.: #43131]	Cultivation medium used	LB agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

BHI

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Culture medium growth

		Temperature
[Ref.: #43131]	optimum	28 °C
[Ref.: #43131]	growth	25-37 °C
[Ref.: #67771]	growth	28-30 °C

[Ref.: #43131]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43131]			optimum	7.5
[Ref.: #43131]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43131]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43131]		NaCl		growth	0-5.0	%(w/v)
[Ref.: #43131]		NaCl		optimum	1	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43131]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	assimilation
[Ref.: #43131]	arbutin ChEBI	+	builds acid from
[Ref.: #43131]	casein	-	hydrolysis
[Ref.: #43131]	cellobiose ChEBI	+	builds acid from
[Ref.: #43131]	cellobiose ChEBI	+	assimilation
[Ref.: #43131]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43131]	D-fructose ChEBI	+	builds acid from
[Ref.: #43131]	D-fucose ChEBI	-	builds acid from
[Ref.: #43131]	D-galactose ChEBI	+	builds acid from
[Ref.: #43131]	D-galactose ChEBI	+	assimilation
[Ref.: #43131]	D-glucose ChEBI	+	builds acid from
[Ref.: #43131]	D-glucose ChEBI	+	carbon source
[Ref.: #43131]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43131]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43131]	D-mannitol ChEBI	-	assimilation
[Ref.: #43131]	D-mannose ChEBI	+	builds acid from
[Ref.: #43131]	D-mannose ChEBI	+	assimilation
[Ref.: #43131]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43131]	D-xylose ChEBI	+	builds acid from
[Ref.: #43131]	D-xylose ChEBI	+	assimilation
[Ref.: #43131]	erythritol ChEBI	-	builds acid from
[Ref.: #43131]	esculin ChEBI	+	hydrolysis
[Ref.: #43131]	galactitol ChEBI	-	builds acid from
[Ref.: #43131]	gelatin ChEBI	-	hydrolysis
[Ref.: #43131]	glucose ChEBI	+	fermentation
[Ref.: #43131]	glycerol ChEBI	-	builds acid from
[Ref.: #43131]	glycogen ChEBI	-	builds acid from
[Ref.: #43131]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #43131]	inulin ChEBI	+	builds acid from
[Ref.: #43131]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43131]	L-arabitol ChEBI	-	assimilation
[Ref.: #43131]	L-fucose ChEBI	-	builds acid from
[Ref.: #43131]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43131]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43131]	L-xylose ChEBI	-	builds acid from
[Ref.: #43131]	lactose ChEBI	+	builds acid from
[Ref.: #43131]	lactose ChEBI	+	carbon source
[Ref.: #43131]	maltose ChEBI	+	builds acid from
[Ref.: #43131]	maltose ChEBI	+	carbon source
[Ref.: #43131]	melezitose ChEBI	-	builds acid from
[Ref.: #43131]	melibiose ChEBI	+	builds acid from
[Ref.: #43131]	melibiose ChEBI	+	assimilation
[Ref.: #43131]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #43131]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43131]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43131]	nitrate ChEBI	-	reduction
[Ref.: #43131]	raffinose ChEBI	+	builds acid from
[Ref.: #43131]	raffinose ChEBI	+	assimilation
[Ref.: #43131]	ribitol ChEBI	-	builds acid from
[Ref.: #43131]	salicin ChEBI	+	builds acid from
[Ref.: #43131]	sorbitol ChEBI	-	assimilation
[Ref.: #43131]	starch ChEBI	+	hydrolysis
[Ref.: #43131]	sucrose ChEBI	+	builds acid from
[Ref.: #43131]	sucrose ChEBI	+	assimilation
[Ref.: #43131]	trehalose ChEBI	+	builds acid from
[Ref.: #43131]	trehalose ChEBI	+	assimilation
[Ref.: #43131]	turanose ChEBI	-	builds acid from
[Ref.: #43131]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43131]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43131]	xanthine ChEBI	+	hydrolysis
[Ref.: #43131]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43131]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #43131]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43131]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43131]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43131]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43131]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43131]	oxytetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43131]	polymyxin b ChEBI	yes	300	µg (disc)
[Ref.: #43131]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43131]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43131]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43131]		hydrogen sulfide ChEBI	no
[Ref.: #43131]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43131]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43131]	catalase	+	1.11.1.6
[Ref.: #43131]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43131]	gelatinase	-
[Ref.: #43131]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43131]

Fatty acid	Percentage
C15:0 iso	17.9
10-methyl C16:0 / iso-C17:1ω9c	13
C16:1ω6c / C16:1ω7c	12
C17:0 iso 3OH	8.2
C15:0 anteiso	5.6
C11:0 anteiso	5.4
C15:1 iso G	4.6
C16:1 iso H	4.6
C15:0 iso 3OH	4.4
C16:0 iso	3.5
C17:1ω6c	2.7
C14:0 iso	2
C15:1ω6c	1.8
C11:0 iso	1.2
C17:1ω8c	1.1
anteiso-C17:1 H	1.1
C15:1 anteiso A	1.1
C16:0	1.1
C17:0 anteiso	1
C15:0 2OH	1
C17:0 iso	0.7
C10:0 iso	0.7
C18:1 iso H	0.3
C14:0	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42835]	Sample type/isolated from	hexachlorocyclohexane contaminated dumpsite soil
[Ref.: #42835]	Geographic location (country and/or sea, region)	Uttar Pradesh, Lucknow, Ummari Village
[Ref.: #42835]	Country	India
[Ref.: #42835]	Country ISO 3 Code	IND
[Ref.: #42835]	Continent	Asia
[Ref.: #42835]	Geographic location	27.0067°/81.1493°

[Ref.: #43131]	Sample type/isolated from	HCH-contaminated dumpsite
[Ref.: #43131]	Geographic location (country and/or sea, region)	Ummari Village, Lucknow, India
[Ref.: #43131]	Country	India
[Ref.: #43131]	Country ISO 3 Code	IND
[Ref.: #43131]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From hexachlorocyclohexane(HCH)-contaminated dumpsite soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Ummari Village, Lucknow
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Waste	#Landfill
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP861852 (>99% sequence identity) for Algoriphagus from Microbeatlas

Aquatic Samples	298
Soil Samples	390
Animal Samples	50
Plant Samples	16
Total Samples	754

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43131]	16S rRNA gene sequences	KP861852.2	1471	ENA	1649265 tax ID
[Ref.: #42835]	Algoriphagus roseus strain W29 16S ribosomal RNA gene, partial sequence	KP861852	1471	ENA	1649265 tax ID

[Ref.: #43131]	GC-content	46.2 mol%	Thermal denaturation, fluorometry
[Ref.: #42835]	GC-content	46.2 mol%	fluorimetric
[Ref.: #67771]	GC-content	46.2 mol%

Availability in culture collections External links

[Ref.: #42835]

Culture collection no.

DSM 100160, KCTC 42940, MCC 2876

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus roseus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite.	Kohli P, Nayyar N, Sharma A, Singh AK, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001233	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42835

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100160

#43131

Puneet Kohli, Namita Nayyar, Anukriti Sharma, Amit Kumar Singh and Rup Lal: Algoriphagus roseus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite. IJSEM 66: 3558 - 3565 2016 ( DOI 10.1099/ijsem.0.001233 , PubMed 27288008 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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