Algoriphagus roseus (DSM 100160, KCTC 42940, MCC 2876)

Name: Algoriphagus roseus (DSM 100160, KCTC 42940, MCC 2876)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140228

Type strain

Strain Designation W29

Culture col. no. DSM 100160 KCTC 42940 MCC 2876 W29

NCBI tax ID(s) 1649265

Special Collections DSMZ KCTC Literature strains

History <- R. Lal, Univ. Delhi, Dept. Zoology, India; W29 <- P. Kohli <- Rup Lal, Univ. of Delhi

Links

Algoriphagus roseus W29 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from hexachlorocyclohexane contaminated dumpsite soil.

Gram-negative rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26397

KCTC 42940

@ref 20215

Last LPSN update 2026-02-09 11:33:33

Domain Bacteria

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus roseus

Full scientific name Algoriphagus roseus Kohli et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43131	negative	0.8-1.5 µm	0.3-0.5 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony color	Colony shape	Medium used
43131	reddish-pink	circular	LB agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43131	LB (Luria-Bertani) MEDIUM
43131	Nutrient agar (NA)
43131	Marine agar (MA)
43131	Reasoner's 2A agar (R2A)
43131	Trypticase Soy Agar (TSA)
43131	BHI

Culture temp

@ref	Growth	Type	Temperature (°C)
43131	positive	optimum	28
43131	positive	growth	25-37
67771	positive	growth	28-30

Culture pH

@ref	Ability	Type	PH	PH range
43131	positive	optimum	7.5
43131	positive	growth	7.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43131	aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43131	NaCl	positive	growth	0-5.0 %(w/v)
43131	NaCl	positive	optimum	1 %

Observation

67771

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43131		4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	assimilation
43131	18305 ChEBI	arbutin	+	builds acid from
43131		casein	-	hydrolysis
43131	17057 ChEBI	cellobiose	+	builds acid from
43131	17057 ChEBI	cellobiose	+	assimilation
43131	17108 ChEBI	D-arabinose	-	builds acid from
43131	15824 ChEBI	D-fructose	+	builds acid from
43131	28847 ChEBI	D-fucose	-	builds acid from
43131	12936 ChEBI	D-galactose	+	builds acid from
43131	12936 ChEBI	D-galactose	+	assimilation
43131	17634 ChEBI	D-glucose	+	builds acid from
43131	17634 ChEBI	D-glucose	+	carbon source
43131	62318 ChEBI	D-lyxose	-	builds acid from
43131	16899 ChEBI	D-mannitol	-	builds acid from
43131	16899 ChEBI	D-mannitol	-	assimilation
43131	16024 ChEBI	D-mannose	+	builds acid from
43131	16024 ChEBI	D-mannose	+	assimilation
43131	16443 ChEBI	D-tagatose	-	builds acid from
43131	65327 ChEBI	D-xylose	+	builds acid from
43131	65327 ChEBI	D-xylose	+	assimilation
43131	17113 ChEBI	erythritol	-	builds acid from
43131	4853 ChEBI	esculin	+	hydrolysis
43131	16813 ChEBI	galactitol	-	builds acid from
43131	5291 ChEBI	gelatin	-	hydrolysis
43131	17234 ChEBI	glucose	+	fermentation
43131	17754 ChEBI	glycerol	-	builds acid from
43131	28087 ChEBI	glycogen	-	builds acid from
43131	17368 ChEBI	hypoxanthine	+	hydrolysis
43131	15443 ChEBI	inulin	+	builds acid from
43131	30849 ChEBI	L-arabinose	+	builds acid from
43131	18403 ChEBI	L-arabitol	-	assimilation
43131	18287 ChEBI	L-fucose	-	builds acid from
43131	62345 ChEBI	L-rhamnose	-	builds acid from
43131	17266 ChEBI	L-sorbose	-	builds acid from
43131	65328 ChEBI	L-xylose	-	builds acid from
43131	17716 ChEBI	lactose	+	builds acid from
43131	17716 ChEBI	lactose	+	carbon source
43131	17306 ChEBI	maltose	+	builds acid from
43131	17306 ChEBI	maltose	+	carbon source
43131	6731 ChEBI	melezitose	-	builds acid from
43131	28053 ChEBI	melibiose	+	builds acid from
43131	28053 ChEBI	melibiose	+	assimilation
43131	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
43131	17268 ChEBI	myo-inositol	-	builds acid from
43131	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43131	17632 ChEBI	nitrate	-	reduction
43131	16634 ChEBI	raffinose	+	builds acid from
43131	16634 ChEBI	raffinose	+	assimilation
43131	15963 ChEBI	ribitol	-	builds acid from
43131	17814 ChEBI	salicin	+	builds acid from
43131	30911 ChEBI	sorbitol	-	assimilation
43131	28017 ChEBI	starch	+	hydrolysis
43131	17992 ChEBI	sucrose	+	builds acid from
43131	17992 ChEBI	sucrose	+	assimilation
43131	27082 ChEBI	trehalose	+	builds acid from
43131	27082 ChEBI	trehalose	+	assimilation
43131	32528 ChEBI	turanose	-	builds acid from
43131	53424 ChEBI	tween 20	+	hydrolysis
43131	53426 ChEBI	tween 80	+	hydrolysis
43131	15318 ChEBI	xanthine	+	hydrolysis
43131	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43131	2637	amikacin	30 µg (disc)
43131	28971	ampicillin		10 µg (disc)
43131	17698	chloramphenicol	30 µg (disc)
43131	100241	ciprofloxacin	5 µg (disc)
43131	17833	gentamicin	10 µg (disc)
43131	100147	nalidixic acid	30 µg (disc)
43131	27701	oxytetracycline	30 µg (disc)
43131	8309	polymyxin b	300 µg (disc)
43131	28077	rifampicin	5 µg (disc)
43131	27902	tetracycline	30 µg (disc)
43131	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43131	16136 ChEBI	hydrogen sulfide
43131	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43131	arginine dihydrolase	-	3.5.3.6
43131	catalase	+	1.11.1.6
43131	cytochrome oxidase	+	1.9.3.1
43131	gelatinase	-
43131	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

43131

Fatty acid	Percentage
C15:0 iso	17.9
10-methyl C16:0 / iso-C17:1ω9c	13
C16:1ω6c / C16:1ω7c	12
C17:0 iso 3OH	8.2
C15:0 anteiso	5.6
C11:0 anteiso	5.4
C15:1 iso G	4.6
C16:1 iso H	4.6
C15:0 iso 3OH	4.4
C16:0 iso	3.5
C17:1ω6c	2.7
C14:0 iso	2
C15:1ω6c	1.8
C11:0 iso	1.2
C17:1ω8c	1.1
anteiso-C17:1 H	1.1
C15:1 anteiso A	1.1
C16:0	1.1
C17:0 anteiso	1
C15:0 2OH	1
C17:0 iso	0.7
C10:0 iso	0.7
C18:1 iso H	0.3
C14:0	0.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Engineered	#Waste	#Landfill
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
42835	hexachlorocyclohexane contaminated dumpsite soil	Uttar Pradesh, Lucknow, Ummari Village	India	IND	Asia	27.0067	81.1493 27.0067/81.1493
43131	HCH-contaminated dumpsite	Ummari Village, Lucknow, India	India	IND	Asia
67771	From hexachlorocyclohexane(HCH)-contaminated dumpsite soil	Ummari Village, Lucknow	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence KP861852 (>99% sequence identity) for Algoriphagus from Microbeatlas

Aquatic Samples	298
Soil Samples	390
Animal Samples	50
Plant Samples	16
Total Samples	754

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43131	Algoriphagus roseus strain W29 16S ribosomal RNA gene, partial sequence	KP861852.2	1471		1649265
42835	Algoriphagus roseus strain W29 16S ribosomal RNA gene, partial sequence	KP861852	1471		1649265

GC content

@ref	GC-content (mol%)	Method
43131	46.2	Thermal denaturation, fluorometry
42835	46.2	fluorimetric
67771	46.2

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus roseus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite.	Kohli P, Nayyar N, Sharma A, Singh AK, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001233	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42835	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100160
#43131	Puneet Kohli, Namita Nayyar, Anukriti Sharma, Amit Kumar Singh and Rup Lal: Algoriphagus roseus sp. nov., isolated from a hexachlorocyclohexane-contaminated dumpsite. IJSEM 66: 3558 - 3565 2016 ( DOI 10.1099/ijsem.0.001233 , PubMed 27288008 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algoriphagus roseus (DSM 100160, KCTC 42940, MCC 2876)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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