Name: Vogesella facilis TTM-24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140141

Type strain:

Species: Vogesella facilis

Strain Designation: TTM-24

Culture col. no.: DSM 105718, BCRC 80912, KCTC 42742, LMG 29003

Strain history: <- LMG <- W.-M. Chen, Department of Seafood Science, National Kaohsiung Marine University, Kaohsiung City, Taiwan, ROC; TTM-24

NCBI tax ID(s): 1655232 (species)

SI-ID 396440

LMG 29003, BCRC 80912, KCTC 42742, DSM 105718

Section

Vogesella facilis TTM-24 is a facultative anaerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from fresh water.

colony-forming
Gram-negative
motile
rod-shaped
chemoheterotroph
facultative anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Vogesella*
	Species	**Vogesella facilis**
	Full Scientific Name (LPSN)	Vogesella facilis Sheu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43828]	Gram stain	negative

[Ref.: #43828]	Cell length	1-1.8 µm

[Ref.: #43828]	Cell width	0.5-0.8 µm

[Ref.: #43828]	Cell shape	rod-shaped

[Ref.: #43828]	Motility	yes

[Ref.: #43828]	Flagellum arrangement	monotrichous, polar

[Ref.: #43828]	Colony size	1.1-2 mm
[Ref.: #43828]	Colony color	Colourless to white
[Ref.: #43828]	Colony shape	circular
[Ref.: #43828]	Incubation period	2 days
[Ref.: #43828]	Cultivation medium used	R2A agar

Multimedia content

[Ref.: #42748]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43828]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43828]

Culture medium growth

[Ref.: #43828]

Culture medium

Nutrient agar (NA)

[Ref.: #43828]

Culture medium growth

[Ref.: #43828]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43828]

Culture medium growth

[Ref.: #43828]

Culture medium

Trypticase soy agar

[Ref.: #43828]

Culture medium growth

[Ref.: #42748]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #42748]

Culture medium growth

[Ref.: #42748]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42748]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42748]	growth	28 °C
[Ref.: #43828]	growth	15-37 °C
[Ref.: #43828]	optimum	25 °C

[Ref.: #42748]	Temperature range	mesophilic
[Ref.: #43828]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43828]			optimum	7
[Ref.: #43828]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43828]

Oxygen tolerance

facultative anaerobe

[Ref.: #43828]

Nutrition type

chemoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43828]		NaCl		growth	0-1	%(w/v)
[Ref.: #43828]		NaCl		optimum	0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43828]	2,3-butanediol ChEBI	+	oxidation
[Ref.: #43828]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43828]	2-oxobutanoate ChEBI	+	oxidation
[Ref.: #43828]	2-oxoglutarate ChEBI	-	oxidation
[Ref.: #43828]	2-oxopentanoate ChEBI	-	oxidation
[Ref.: #43828]	4-hydroxybutyrate ChEBI	-	oxidation
[Ref.: #43828]	acetate ChEBI	+	oxidation
[Ref.: #43828]	adipate ChEBI	-	assimilation
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43828]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #43828]	alpha-lactose ChEBI	-	oxidation
[Ref.: #43828]	arabinose ChEBI	+	assimilation
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43828]	beta-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #43828]	bromosuccinate ChEBI	-	oxidation
[Ref.: #43828]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43828]	casein	-	hydrolysis
[Ref.: #43828]	cellobiose ChEBI	-	oxidation
[Ref.: #43828]	chitin ChEBI	-	hydrolysis
[Ref.: #43828]	cis-aconitate ChEBI	-	oxidation
[Ref.: #43828]	citrate ChEBI	-	assimilation
[Ref.: #43828]	citrate ChEBI	-	oxidation
[Ref.: #43828]	corn oil	-	hydrolysis
[Ref.: #43828]	D-alanine ChEBI	+	oxidation
[Ref.: #43828]	D-arabitol ChEBI	-	oxidation
[Ref.: #43828]	D-fructose ChEBI	+	oxidation
[Ref.: #43828]	D-galactose ChEBI	+	oxidation
[Ref.: #43828]	D-galacturonic acid ChEBI	-	oxidation
[Ref.: #43828]	D-gluconate ChEBI	+	oxidation
[Ref.: #43828]	D-glucosaminic acid ChEBI	-	oxidation
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #43828]	D-glucose 6-phosphate ChEBI	-	oxidation
[Ref.: #43828]	D-glucuronate ChEBI	-	oxidation
[Ref.: #43828]	D-mannitol ChEBI	-	oxidation
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #43828]	D-mannose ChEBI	-	oxidation
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43828]	D-psicose ChEBI	+	oxidation
[Ref.: #43828]	D-saccharate ChEBI	-	oxidation
[Ref.: #43828]	D-serine ChEBI	+	oxidation
[Ref.: #43828]	D-sorbitol ChEBI	-	oxidation
[Ref.: #43828]	D-trehalose ChEBI	-	oxidation
[Ref.: #43828]	decanoate ChEBI	+	assimilation
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #43828]	dextrin ChEBI	+	oxidation
[Ref.: #43828]	DL-carnitine ChEBI	-	oxidation
[Ref.: #43828]	dna ChEBI	+	hydrolysis
[Ref.: #43828]	erythritol ChEBI	-	oxidation
[Ref.: #43828]	esculin ChEBI	-	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43828]	ethanolamine ChEBI	-	oxidation
[Ref.: #43828]	formate ChEBI	+	oxidation
[Ref.: #43828]	gamma-aminobutyric acid ChEBI	+	oxidation
[Ref.: #43828]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43828]	gentiobiose ChEBI	-	oxidation
[Ref.: #43828]	gluconate ChEBI	+	assimilation
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #43828]	glucose ChEBI	-	builds acid from
[Ref.: #43828]	glucose ChEBI	+	assimilation
[Ref.: #43828]	glucose 1-phosphate ChEBI	-	oxidation
[Ref.: #43828]	glucuronamide ChEBI	-	oxidation
[Ref.: #43828]	glycerol ChEBI	-	oxidation
[Ref.: #43828]	glycerol 1-phosphate ChEBI	-	oxidation
[Ref.: #43828]	glycogen ChEBI	-	oxidation
[Ref.: #43828]	glycyl L-aspartic acid ChEBI	-	oxidation
[Ref.: #43828]	glycyl-l-glutamate ChEBI	+	oxidation
[Ref.: #43828]	hydroxyproline ChEBI	+	oxidation
[Ref.: #43828]	L-alaninamide ChEBI	+	oxidation
[Ref.: #43828]	L-alanine 4-nitroanilide	+	oxidation
[Ref.: #43828]	L-alanylglycine ChEBI	+	oxidation
[Ref.: #43828]	L-arabinose ChEBI	+	oxidation
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #43828]	L-asparagine ChEBI	+	oxidation
[Ref.: #43828]	L-aspartate ChEBI	+	oxidation
[Ref.: #43828]	L-fucose ChEBI	-	oxidation
[Ref.: #43828]	L-histidine ChEBI	+	oxidation
[Ref.: #43828]	L-leucine ChEBI	+	oxidation
[Ref.: #43828]	L-ornithine ChEBI	+	oxidation
[Ref.: #43828]	L-phenylalanine ChEBI	-	oxidation
[Ref.: #43828]	L-pyroglutamic acid ChEBI	-	oxidation
[Ref.: #43828]	L-rhamnose ChEBI	-	oxidation
[Ref.: #43828]	L-serine ChEBI	+	oxidation
[Ref.: #43828]	L-threonine ChEBI	+	oxidation
[Ref.: #43828]	lactate ChEBI	+	oxidation
[Ref.: #43828]	lactulose ChEBI	-	oxidation
[Ref.: #43828]	malate ChEBI	+	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #43828]	malonate ChEBI	-	oxidation
[Ref.: #43828]	maltose ChEBI	-	assimilation
[Ref.: #43828]	maltose ChEBI	-	oxidation
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43828]	mannitol ChEBI	-	assimilation
[Ref.: #43828]	mannose ChEBI	-	assimilation
[Ref.: #43828]	melibiose ChEBI	-	oxidation
[Ref.: #43828]	methyl D-glucoside ChEBI	-	oxidation
[Ref.: #43828]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43828]	monomethyl succinate ChEBI	+	oxidation
[Ref.: #43828]	myo-inositol ChEBI	+	oxidation
[Ref.: #43828]	N-acetylgalactosamine ChEBI	-	oxidation
[Ref.: #43828]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43828]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #43828]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #43828]	phenylacetate ChEBI	-	assimilation
[Ref.: #43828]	propionate ChEBI	+	oxidation
[Ref.: #43828]	putrescine ChEBI	+	oxidation
[Ref.: #43828]	quinate ChEBI	+	oxidation
[Ref.: #43828]	raffinose ChEBI	-	oxidation
[Ref.: #43828]	ribitol ChEBI	-	oxidation
[Ref.: #43828]	starch ChEBI	-	hydrolysis
[Ref.: #43828]	succinamate ChEBI	-	oxidation
[Ref.: #43828]	succinate ChEBI	+	oxidation
[Ref.: #43828]	sucrose ChEBI	-	oxidation
[Ref.: #68369]	tryptophan ChEBI	+	energy source	* from API 20NE
[Ref.: #43828]	turanose ChEBI	-	oxidation
[Ref.: #43828]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43828]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43828]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43828]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43828]	tween 80 ChEBI	+	oxidation
[Ref.: #43828]	urea ChEBI	-	hydrolysis
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #43828]	uridine ChEBI	-	oxidation
[Ref.: #43828]	urocanic acid ChEBI	-	oxidation
[Ref.: #43828]	xylitol ChEBI	-	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43828]		indole ChEBI	yes
[Ref.: #68369]		indole ChEBI	yes	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	+	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #43828]	acid phosphatase	+	3.1.3.2
[Ref.: #43828]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43828]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43828]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43828]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43828]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43828]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43828]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #43828]	beta-galactosidase	-	3.2.1.23
[Ref.: #43828]	beta-glucosidase	-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #43828]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43828]	catalase	+	1.11.1.6
[Ref.: #43828]	cystine arylamidase	-	3.4.11.3
[Ref.: #43828]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #43828]	esterase (C 4)	+
[Ref.: #43828]	esterase Lipase (C 8)	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #43828]	leucine arylamidase	+	3.4.11.1
[Ref.: #43828]	lipase (C 14)	-
[Ref.: #43828]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43828]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43828]	trypsin	-	3.4.21.4
[Ref.: #43828]	urease	-	3.5.1.5
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE
[Ref.: #43828]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43828]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	49.1
C16:0	25.4
C18:1ω7c	6.3
C10:0	3.3
C10:0 3OH	3
C12:0	2.9
C12:0 3OH	2.9
C14:0	1.9

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #42748]	24624	+	+	-	-	+	-	-	-	+	+	-	-	+	-	+	+	-	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42748]	Sample type/isolated from	fresh water
[Ref.: #42748]	Geographic location (country and/or sea, region)	Chaohu River
[Ref.: #42748]	Country	Taiwan
[Ref.: #42748]	Country ISO 3 Code	TWN
[Ref.: #42748]	Continent	Asia
[Ref.: #42748]	Geographic location	24.0733°/120.7680°

[Ref.: #43828]	Sample type/isolated from	Water of the Chaohu River
[Ref.: #43828]	Geographic location (country and/or sea, region)	Taichung City
[Ref.: #43828]	Country	Taiwan
[Ref.: #43828]	Country ISO 3 Code	TWN
[Ref.: #43828]	Continent	Asia
[Ref.: #43828]	Geographic location	24.0733°/120.7680°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42748]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42748]	Vogesella sp. TTM-24 partial 16S rRNA gene, strain TTM-24	LN849947	1449	ENA	1655232 tax ID

[Ref.: #43828]

GC-content

67.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #42748]

Culture collection no.

DSM 105718, BCRC 80912, KCTC 42742, LMG 29003

[Ref.: #96534]

SI-ID 396440

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella.	Sheu SY, Chen YL, Young CC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.000797	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42748

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105718

#43828

Shih-Yi Sheu, Yi-Ling Chen, Chiu-Chung Young, Wen-Ming Chen: Vogesella facilis sp. nov., isolated from a freshwater river, and emended description of the genus Vogesella. IJSEM 66: 817 - 823 2016 ( DOI 10.1099/ijsem.0.000797 , PubMed 26610704 )

#68369

Automatically annotated from API 20NE .

#96534

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396440.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Vogesella facilis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF