Name: Rhodocista centenaria strain Favinger/Gest
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14012

Type strain:

Species: Rhodocista centenaria

Strain Designation: strain Favinger/Gest

Variant: Isotype of BacDive ID 13957

Culture col. no.: DSM 8284, ATCC 43720, JCM 21060

Strain history: <- ATCC <- H. Gest, strain Favinger/Gest

NCBI tax ID(s): 34018 (species)

Other strains from Rhodocista centenaria

R. centenaria Favinger/Gest strain, DSM 9894, ... (type strain)

Section

Rhodocista centenaria strain Favinger/Gest is an anaerobe, mesophilic, motile bacterium that was isolated from hot spring mud.

motile
anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Rhodocista*
	Species	**Rhodocista centenaria**
	Full Scientific Name (LPSN)	Rhodocista centenaria Kawasaki et al. 1994

Synonym

Rhodospirillum centenum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #69480]	Motility	yes Confidence in %93.686

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3225]

Culture medium

CENTENUM MEDIUM (DSMZ Medium 650)

[Ref.: #3225]

Culture medium growth

[Ref.: #3225]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3225]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3225]			growth	30 °C

[Ref.: #3225]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3225]

Oxygen tolerance

anaerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.995

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3225]	Sample type/isolated from	hot spring mud
[Ref.: #3225]	Geographic location (country and/or sea, region)	Wyoming
[Ref.: #3225]	Country	USA
[Ref.: #3225]	Country ISO 3 Code	USA
[Ref.: #3225]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3225]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodospirillum centenum strain DSM 8284	34018.3	wgs	PATRIC	34018 tax ID	*
[Ref.: #66792]	Rhodocista centenaria DSM 8284	2838106681	draft	JGI IMG/M	34018 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodospirillum centenum strain DSM 8284 PATRIC: 34018.3
[Ref.: #69481]	spore-forming	no	73	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodospirillum centenum strain DSM 8284 PATRIC: 34018.3
[Ref.: #69480]	gram-positive	no	99.099	no
[Ref.: #69480]	anaerobic	no	65.478	yes
[Ref.: #69480]	halophile	no	85.426	no
[Ref.: #69480]	spore-forming	no	93.239	no
[Ref.: #69480]	glucose-util	yes	80.076	no
[Ref.: #69480]	motile	yes	91.65	no
[Ref.: #69480]	flagellated	yes	67.918	no
[Ref.: #69480]	thermophile	no	90.424	yes
[Ref.: #69480]	aerobic	no	69.953	yes
[Ref.: #69480]	glucose-ferment	no	90.584	no

Availability in culture collections External links

[Ref.: #3225]

Culture collection no.

DSM 8284, ATCC 43720, JCM 21060

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Niveispirillum fermenti gen. nov., sp. nov., isolated from a fermentor in Taiwan, transfer of Azospirillum irakense (1989) as Niveispirillum irakense comb. nov., and reclassification of Azospirillum amazonense (1983) as Nitrospirillum amazonense gen. nov.	Lin SY, Hameed A, Shen FT, Liu YC, Hsu YH, Shahina M, Lai WA, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0176-6	2014	*

References

#3225

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8284

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Rhodospirillum centenum strain DSM 8284

Rhodospirillum centenum strain DSM 8284

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