Name: Deinococcus metallilatus MA1002
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140102

Type strain:

Species: Deinococcus metallilatus

Strain Designation: MA1002

Culture col. no.: DSM 105434, KACC 17964, NBRC 11041

Strain history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17964 <- J.O. Ka, Seoul; MA1002

NCBI tax ID(s): 1211322 (species)

SI-ID 398451

DSM 105434

Section

Deinococcus metallilatus MA1002 is a mesophilic bacterium that was isolated from car, air-conditioning system .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus metallilatus**
	Full Scientific Name (LPSN)	Deinococcus metallilatus Kim et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %98.82

[Ref.: #69480]	Motility	no Confidence in %91.202

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42709]

Culture medium

GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)

[Ref.: #42709]

Culture medium growth

[Ref.: #42709]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42709]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42709]			growth	28 °C

[Ref.: #42709]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.803

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42709]	Sample type/isolated from	car, air-conditioning system (biofilm of the evaporator core)
[Ref.: #42709]	Country	Republic of Korea
[Ref.: #42709]	Country ISO 3 Code	KOR
[Ref.: #42709]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX089329 (>99% sequence identity) for Deinococcus metallilatus subclade from Microbeatlas

Aquatic Samples	7
Soil Samples	4
Animal Samples	18
Plant Samples	16
Total Samples	45

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42709]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42709]	Deinococcus metallilatus strain MA1002 16S ribosomal RNA gene, partial sequence	JX089329	1444	ENA	1211322 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus metallilatus MA1002	GCA_004758605	chromosome	GenBank	1211322 tax ID	*
[Ref.: #66792]	Deinococcus metallilatus DSM 105434	GCA_014202095	contig	GenBank	1211322 tax ID	*
[Ref.: #66792]	Deinococcus metallilatus MA1002	GCA_004115945	contig	GenBank	1211322 tax ID	*
[Ref.: #66792]	Deinococcus metallilatus strain DSM 105434	1211322.6	wgs	PATRIC	1211322 tax ID	*
[Ref.: #66792]	Deinococcus metallilatus MA1002	2895824695	draft	JGI IMG/M	1211322 tax ID	*
[Ref.: #66792]	Deinococcus metallilatus DSM 105434	2861326389	draft	JGI IMG/M	1211322 tax ID	*

[Ref.: #42709]

GC-content

70.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus metallilatus MA1002 NCBI: GCA_004758605.1
[Ref.: #69481]	spore-forming	no	72	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus metallilatus MA1002 NCBI: GCA_004758605.1
[Ref.: #69480]	motile	no	87.28	no
[Ref.: #69480]	flagellated	no	96.819	no
[Ref.: #69480]	gram-positive	yes	74.138	no
[Ref.: #69480]	anaerobic	no	98.718	no
[Ref.: #69480]	aerobic	yes	89.827	no
[Ref.: #69480]	halophile	no	93.098	no
[Ref.: #69480]	spore-forming	no	87.138	no
[Ref.: #69480]	thermophile	no	71.237	yes
[Ref.: #69480]	glucose-util	yes	82.553	no
[Ref.: #69480]	glucose-ferment	no	90.653	no

Availability in culture collections External links

[Ref.: #42709]

Culture collection no.

DSM 105434, KACC 17964, NBRC 11041

[Ref.: #96510]

SI-ID 398451

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system.	Kim DU, Lee H, Lee JH, Ahn JH, Lim S, Jeong S, Park SY, Seong CN, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.000396	2015	*
Biotechnology	Killing effect of deinoxanthins on cyanobloom-forming Microcystis aeruginosa: Eco-friendly production and specific activity of deinoxanthins.	Kim W, Kim M, Hong M, Park W	Environ Res	10.1016/j.envres.2021.111455	2021	*
Transcriptome	Comparative genomics of wild-type and laboratory-evolved biofilm-overproducing Deinococcus metallilatus strains.	Park C, Shin B, Kim W, Cheong H, Park S, Park W	Microb Genom	10.1099/mgen.0.000464	2020	*
Phylogeny	Deinococcus aluminii sp. nov., isolated from an automobile air conditioning system.	Kim DU, Lee H, Lee S, Park S, Yoon JH, Zhao L, Kim MK, Ahn JH, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002574	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42709

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105434

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96510

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398451.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Deinococcus metallilatus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF