Name: Sphingobacterium soli DSM 101679
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140094

Type strain:

Species: Sphingobacterium soli

Culture col. no.: DSM 101679, CGMCC 1.15966, KCTC 42696, YIM X0211

Strain history: <- Wenjun Li, Yunnan Institute of Microbiology, China

NCBI tax ID(s): 1914757 (species)

SI-ID 397641

DSM 101679

Section

Sphingobacterium soli DSM 101679 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from From a soil sample of Shiling County.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Sphingobacterium*
	Species	**Sphingobacterium soli**
	Full Scientific Name (LPSN)	Sphingobacterium soli Fu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43297]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #43297]	Cell length	1.2-1.3 µm

[Ref.: #43297]	Cell width	0.5-0.6 µm

[Ref.: #43297]	Cell shape	rod-shaped

[Ref.: #43297]	Motility	no

[Ref.: #43297]	Colony color	Yellowish
[Ref.: #43297]	Colony shape	circular
[Ref.: #43297]	Cultivation medium used	R2A agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43297]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43297]

Culture medium growth

[Ref.: #42701]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #42701]

Culture medium growth

[Ref.: #42701]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42701]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42701]	growth	28 °C
[Ref.: #43297]	optimum	30 °C
[Ref.: #43297]	growth	10-37 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #42701]	Temperature range	mesophilic
[Ref.: #43297]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43297]			optimum	7
[Ref.: #43297]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43297]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43297]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43297]		NaCl		optimum	0-3	%
[Ref.: #43297]		NaCl		growth	3-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43297]	acetate ChEBI	+	respiration
[Ref.: #43297]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #43297]	alpha-lactose ChEBI	+	respiration
[Ref.: #43297]	cellobiose ChEBI	+	respiration
[Ref.: #43297]	D-arabitol ChEBI	+	respiration
[Ref.: #43297]	D-aspartate ChEBI	-	respiration
[Ref.: #43297]	D-fructose ChEBI	+	respiration
[Ref.: #43297]	D-galactose ChEBI	+	respiration
[Ref.: #43297]	D-galacturonic acid ChEBI	+	respiration
[Ref.: #43297]	D-gluconate ChEBI	-	respiration
[Ref.: #43297]	D-glucuronate ChEBI	+	respiration
[Ref.: #43297]	D-mannose ChEBI	+	assimilation
[Ref.: #43297]	D-mannose ChEBI	+	respiration
[Ref.: #43297]	D-serine ChEBI	-	respiration
[Ref.: #43297]	dextrin ChEBI	+	respiration
[Ref.: #43297]	esculin ChEBI	+	hydrolysis
[Ref.: #43297]	gelatin ChEBI	+	hydrolysis
[Ref.: #43297]	glucose ChEBI	+	fermentation
[Ref.: #43297]	glycerol ChEBI	+	respiration
[Ref.: #43297]	inosine ChEBI	+	respiration
[Ref.: #43297]	L-alanine ChEBI	-	respiration
[Ref.: #43297]	L-arginine ChEBI	+	respiration
[Ref.: #43297]	L-aspartate ChEBI	-	respiration
[Ref.: #43297]	L-fucose ChEBI	+	respiration
[Ref.: #43297]	L-galactonate ChEBI	+	respiration
[Ref.: #43297]	L-glutamate ChEBI	+	respiration
[Ref.: #43297]	L-histidine ChEBI	+	respiration
[Ref.: #43297]	L-proline ChEBI	-	respiration
[Ref.: #43297]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #43297]	L-rhamnose ChEBI	+	respiration
[Ref.: #43297]	L-serine ChEBI	+	respiration
[Ref.: #43297]	lactate ChEBI	+	respiration
[Ref.: #43297]	maltose ChEBI	+	assimilation
[Ref.: #43297]	melibiose ChEBI	+	respiration
[Ref.: #43297]	methyl beta-D-glucopyranoside ChEBI	+	respiration
[Ref.: #43297]	minocycline ChEBI	-	respiration
[Ref.: #43297]	N-acetylgalactosamine ChEBI	+	respiration
[Ref.: #43297]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43297]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #43297]	n-acetylneuraminate ChEBI	+	respiration
[Ref.: #43297]	nitrate ChEBI	-	reduction
[Ref.: #43297]	pectin ChEBI	-	respiration
[Ref.: #43297]	raffinose ChEBI	+	respiration
[Ref.: #43297]	rifamycin sv ChEBI	-	respiration
[Ref.: #43297]	salicin ChEBI	+	respiration
[Ref.: #43297]	sucrose ChEBI	+	respiration
[Ref.: #43297]	trehalose ChEBI	+	respiration
[Ref.: #43297]	turanose ChEBI	+	respiration
[Ref.: #43297]	tween 40 ChEBI	+	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43297]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #43297]	ciprofloxacin ChEBI	yes	30	µg (disc)
[Ref.: #43297]	erythromycin ChEBI				yes	15	µg (disc)
[Ref.: #43297]	novobiocin ChEBI				yes	30	µg (disc)
[Ref.: #43297]	piperacillin ChEBI				yes	10	µg (disc)
[Ref.: #43297]	polymyxin b ChEBI				yes	30	µg (disc)
[Ref.: #43297]	tetracycline ChEBI				yes	30	µg (disc)

	Enzyme	Enzyme activity	EC number
[Ref.: #43297]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #43297]	acid phosphatase	+	3.1.3.2
[Ref.: #43297]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43297]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43297]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43297]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43297]	beta-D-fucosidase	+	3.2.1.38
[Ref.: #43297]	beta-glucosidase	+	3.2.1.21
[Ref.: #43297]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43297]	catalase	+	1.11.1.6
[Ref.: #43297]	cystine arylamidase	+	3.4.11.3
[Ref.: #43297]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43297]	esterase (C 4)	+
[Ref.: #43297]	esterase Lipase (C 8)	+
[Ref.: #43297]	leucine arylamidase	+	3.4.11.1
[Ref.: #43297]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43297]	trypsin	+	3.4.21.4
[Ref.: #43297]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43297]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	30.4
iso-C15:02-OH	23.7
C17:0 iso 3OH	20.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From a soil sample of Shiling County
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #42701]	Sample type/isolated from	soil
[Ref.: #42701]	Geographic location (country and/or sea, region)	Yunnan Province, Shiling County, Impression Tobacco farm
[Ref.: #42701]	Country	China
[Ref.: #42701]	Country ISO 3 Code	CHN
[Ref.: #42701]	Continent	Asia

[Ref.: #43297]	Sample type/isolated from	soil sample from Impression Tobacco farm in Shiling County, Yunnan Province, south-west China
[Ref.: #43297]	Geographic location (country and/or sea, region)	Shiling County, Yunnan Province, south-west China
[Ref.: #43297]	Country	China
[Ref.: #43297]	Country ISO 3 Code	CHN
[Ref.: #43297]	Continent	Asia
[Ref.: #43297]	Geographic location	24.0000°/103.0000°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42701]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42701]	Sphingobacterium sp. NCCP-698 gene for 16S ribosomal RNA, partial sequence	LC193945	1477	ENA	1914757 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingobacterium soli DSM 101679	GCA_014138555	scaffold	GenBank	1914757 tax ID	*
[Ref.: #66792]	Sphingobacterium soli CGMCC 1.15966	GCA_014644335	scaffold	GenBank	1914757 tax ID	*
[Ref.: #66792]	Sphingobacterium soli strain CGMCC 1.15966	1914757.4	wgs	PATRIC	1914757 tax ID	*
[Ref.: #66792]	Sphingobacterium soli strain DSM 101679	1914757.3	wgs	PATRIC	1914757 tax ID	*
[Ref.: #66792]	Sphingobacterium soli DSM 101679	2861287033	draft	JGI IMG/M	1914757 tax ID	*

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GC-content

41.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingobacterium soli DSM 101679 NCBI: GCA_014138555.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingobacterium soli DSM 101679 NCBI: GCA_014138555.1
[Ref.: #69480]	flagellated	no	97.658	yes
[Ref.: #69480]	gram-positive	no	97.826	no
[Ref.: #69480]	anaerobic	no	99.249	yes
[Ref.: #69480]	aerobic	yes	88.94	yes
[Ref.: #69480]	halophile	no	93.532	no
[Ref.: #69480]	spore-forming	no	95.833	yes
[Ref.: #69480]	glucose-util	yes	85.566	yes
[Ref.: #69480]	thermophile	no	98.729	yes
[Ref.: #69480]	motile	no	93.511	no
[Ref.: #69480]	glucose-ferment	no	89.297	yes

Availability in culture collections External links

[Ref.: #42701]

Culture collection no.

DSM 101679, CGMCC 1.15966, KCTC 42696, YIM X0211

[Ref.: #96507]

SI-ID 397641

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingobacteriumsoli sp. nov., isolated from soil.	Fu YS, Hussain F, Habib N, Khan IU, Chu X, Duan YQ, Zhi XY, Chen X, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001946	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42701

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101679

#43297

Yu-Song Fu, Firasat Hussain, Neeli Habib, Inam Ullah Khan, Xiao Chu, Yan-Qing Duan, Xiao-Yang Zhi, Xing Chen, Wen-Jun Li: Sphingobacterium soli sp. Nov., isolated from soil. IJSEM 67: 2284 - 2288 2017 ( DOI 10.1099/ijsem.0.001946 , PubMed 28699577 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96507

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397641.1 )

* These data were automatically processed and therefore are not curated

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