Sphingobacterium cellulitidis (DSM 101679, CGMCC 1.15966, KCTC 42696)

Name: Sphingobacterium cellulitidis (DSM 101679, CGMCC 1.15966, KCTC 42696)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140094

Type strain

Culture col. no. DSM 101679 CGMCC 1.15966 KCTC 42696 YIM X0211

NCBI tax ID(s) 1768011

Special Collections DSMZ KCTC Literature strains

History DSMZ <- W.-J. Li, YIM; YIM X0211 KCTC <- Wenjun Li, Yunnan Institute of Microbiology, China

Links

Sphingobacterium cellulitidis DSM 101679 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from From a soil sample of Shiling County.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397641

KCTC 42696,DSM 101679

@ref 20215

Last LPSN update 2026-05-29 08:39:38

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Sphingobacterium

Species Sphingobacterium cellulitidis

Full scientific name Sphingobacterium cellulitidis Huys et al. 2017

Synonyms (1)

Sphingobacterium soli

BacDive ID	Other strains from **Sphingobacterium cellulitidis** (1)	Type strain
133096	S. cellulitidis R-53603, DSM 102028, LMG 28764 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43297	negative	1.2-1.3 µm	0.5-0.6 µm	rod-shaped
125438	negative				97.476
125439	negative				94.37

Colony morphology

@ref	Colony color	Colony shape	Medium used
43297	Yellowish	circular	R2A agar medium

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43297	Reasoner's 2A agar (R2A)
42701	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42701	positive	growth	28
43297	positive	optimum	30
43297	positive	growth	10-37
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
43297	positive	optimum	7
43297	positive	growth	5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43297	aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
43297
125439		98.962

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43297	NaCl	positive	optimum	0-3 %
43297	NaCl	positive	growth	3-5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43297	30089 ChEBI	acetate	+	respiration
43297	17925 ChEBI	alpha-D-glucose	+	respiration
43297	36219 ChEBI	alpha-lactose	+	respiration
43297	17057 ChEBI	cellobiose	+	respiration
43297	18333 ChEBI	D-arabitol	+	respiration
43297	29990 ChEBI	D-aspartate	-	respiration
43297	15824 ChEBI	D-fructose	+	respiration
43297	12936 ChEBI	D-galactose	+	respiration
43297	18024 ChEBI	D-galacturonic acid	+	respiration
43297	8391 ChEBI	D-gluconate	-	respiration
43297	15748 ChEBI	D-glucuronate	+	respiration
43297	16024 ChEBI	D-mannose	+	assimilation
43297	16024 ChEBI	D-mannose	+	respiration
43297	16523 ChEBI	D-serine	-	respiration
43297	23652 ChEBI	dextrin	+	respiration
43297	4853 ChEBI	esculin	+	hydrolysis
43297	5291 ChEBI	gelatin	+	hydrolysis
43297	17234 ChEBI	glucose	+	fermentation
43297	17754 ChEBI	glycerol	+	respiration
43297	17596 ChEBI	inosine	+	respiration
43297	16977 ChEBI	L-alanine	-	respiration
43297	16467 ChEBI	L-arginine	+	respiration
43297	29991 ChEBI	L-aspartate	-	respiration
43297	18287 ChEBI	L-fucose	+	respiration
43297	53071 ChEBI	L-galactonate	+	respiration
43297	29985 ChEBI	L-glutamate	+	respiration
43297	15971 ChEBI	L-histidine	+	respiration
43297	17203 ChEBI	L-proline	-	respiration
43297	18183 ChEBI	L-pyroglutamic acid	-	respiration
43297	62345 ChEBI	L-rhamnose	+	respiration
43297	17115 ChEBI	L-serine	+	respiration
43297	24996 ChEBI	lactate	+	respiration
43297	17306 ChEBI	maltose	+	assimilation
43297	28053 ChEBI	melibiose	+	respiration
43297	320055 ChEBI	methyl beta-D-glucopyranoside	+	respiration
43297	50694 ChEBI	minocycline	-	respiration
43297	28037 ChEBI	N-acetylgalactosamine	+	respiration
43297	506227 ChEBI	N-acetylglucosamine	+	assimilation
43297	506227 ChEBI	N-acetylglucosamine	+	respiration
43297	35418 ChEBI	n-acetylneuraminate	+	respiration
43297	17632 ChEBI	nitrate	-	reduction
43297	17309 ChEBI	pectin	-	respiration
43297	16634 ChEBI	raffinose	+	respiration
43297	29673 ChEBI	rifamycin sv	-	respiration
43297	17814 ChEBI	salicin	+	respiration
43297	17992 ChEBI	sucrose	+	respiration
43297	27082 ChEBI	trehalose	+	respiration
43297	32528 ChEBI	turanose	+	respiration
43297	53423 ChEBI	tween 40	+	respiration

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43297	17698	chloramphenicol	30 µg (disc)
43297	100241	ciprofloxacin		30 µg (disc)
43297	48923	erythromycin	15 µg (disc)
43297	28368	novobiocin	30 µg (disc)
43297	8232	piperacillin	10 µg (disc)
43297	8309	polymyxin b	30 µg (disc)
43297	27902	tetracycline	30 µg (disc)

Enzymes

@ref	Value	Activity	Ec
43297	6-phospho-beta-galactosidase	+	3.2.1.85
43297	acid phosphatase	+	3.1.3.2
43297	alkaline phosphatase	+	3.1.3.1
43297	alpha-galactosidase	+	3.2.1.22
43297	alpha-glucosidase	+	3.2.1.20
43297	alpha-mannosidase	+	3.2.1.24
43297	beta-D-fucosidase	+	3.2.1.38
43297	beta-glucosidase	+	3.2.1.21
43297	beta-glucuronidase	-	3.2.1.31
43297	catalase	+	1.11.1.6
43297	cystine arylamidase	+	3.4.11.3
43297	cytochrome oxidase	+	1.9.3.1
43297	esterase (C 4)	+
43297	esterase Lipase (C 8)	+
43297	leucine arylamidase	+	3.4.11.1
43297	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43297	trypsin	+	3.4.21.4
43297	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43297

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	30.4
iso-C15:02-OH	23.7
C17:0 iso 3OH	20.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
67771	From a soil sample of Shiling County	Yunnan Province	China	CHN	Asia
42701	soil	Yunnan Province, Shiling County, Impression Tobacco farm	China	CHN	Asia
43297	soil sample from Impression Tobacco farm in Shiling County, Yunnan Province, south-west China	Shiling County, Yunnan Province, south-west China	China	CHN	Asia	24	103 24/103

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42701	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1413855v1 assembly for Sphingobacterium cellulitidis DSM 101679	scaffold	GCA_014138555	1914757.3	2861287033	1914757	70.1
66792	ASM1464433v1 assembly for Sphingobacterium cellulitidis CGMCC 1.15966	scaffold	GCA_014644335	1914757.4	8113206351	1914757	68.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42701	Sphingobacterium sp. NCCP-698 gene for 16S ribosomal RNA, partial sequence	LC193945	1477		1914757

GC content

@ref	GC-content (mol%)	Method
42701	41.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1413855v1 assembly for Sphingobacterium cellulitidis DSM 101679
BV-BRC: 1914757.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	69.65	no
125439	gram_stain	BacteriaNetⓘ	negative	94.37	no
125439	motility	BacteriaNetⓘ	no	80.26	no
125439	spore_formation	BacteriaNetⓘ	no	98.96	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sphingobacterium soli DSM 101679
NCBI: GCA_014138555.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.48	yes
125438	anaerobic	anaerobicⓘ	no	96.89	yes
125438	aerobic	aerobicⓘ	yes	85.27	yes
125438	spore-forming	spore-formingⓘ	no	89.68	no
125438	thermophilic	thermophileⓘ	no	97.99	yes
125438	flagellated	motile2+ⓘ	no	88.48	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based reclassification of Sphingobacterium soli Fu et al. 2017 as a later heterotypic synonym of Sphingobacterium cellulitidis Huys et al. 2017 and proposal of Sphingobacterium siyangense subsp. siyangense subsp. nov. and Sphingobacterium siyangense subsp. cladoniae subsp. nov.	Li S, Liu J, Huang J, Dong L, Li WJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006610	2024
Phylogeny	Sphingobacterium tenebrionis sp. nov., isolated from intestine of mealworm.	Zhang C, Zhang G, Chen Y, Zheng S, Du J, Zhao Z, Zhao Y, Wang N, Chen C, Gao Z, Li S, Liu K.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006455	2024
Phylogeny	Sphingobacteriumsoli sp. nov., isolated from soil.	Fu YS, Hussain F, Habib N, Khan IU, Chu X, Duan YQ, Zhi XY, Chen X, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001946	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42701	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101679
#43297	Yu-Song Fu, Firasat Hussain, Neeli Habib, Inam Ullah Khan, Xiao Chu, Yan-Qing Duan, Xiao-Yang Zhi, Xing Chen, Wen-Jun Li: Sphingobacterium soli sp. Nov., isolated from soil. IJSEM 67: 2284 - 2288 2017 ( DOI 10.1099/ijsem.0.001946 , PubMed 28699577 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Sphingobacterium cellulitidis (DSM 101679, CGMCC 1.15966, KCTC 42696)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014138555

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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