Name: Thermoanaerobacterium butyriciformans USBA-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140089

Type strain:

Species: Thermoanaerobacterium butyriciformans

Strain Designation: USBA-19

Culture col. no.: DSM 101588, CMPUJ U-019

Strain history: <- M. Rey Arevalo, Pontificia Univ. Javeriana, Biologia and Bicrobiologia, Bogotá, Colombia; USBA-19 <- S. Baena {2002}

NCBI tax ID(s): 1702242 (species)

SI-ID 401764

DSM 101588

Section

Thermoanaerobacterium butyriciformans USBA-19 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from thermal spring P3, 2500 m altitude.

motile
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Thermoanaerobacterales*
	Family	*Thermoanaerobacteraceae*
	Genus	*Thermoanaerobacterium*
	Species	**Thermoanaerobacterium butyriciformans**
	Full Scientific Name (LPSN)	Thermoanaerobacterium butyriciformans López et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %90.688

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42696]

Culture medium

CALDICELLULOSIRUPTOR MEDIUM (DSMZ Medium 640)

[Ref.: #42696]

Culture medium growth

[Ref.: #42696]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42696]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42696]			growth	55 °C

[Ref.: #42696]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.152

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %100

[Ref.: #69481]	Ability of spore formation	yes Confidence in %98
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42696]	Sample type/isolated from	thermal spring P3, 2500 m altitude
[Ref.: #42696]	Geographic location (country and/or sea, region)	Ojo del Diablo, Paipa
[Ref.: #42696]	Country	Colombia
[Ref.: #42696]	Country ISO 3 Code	COL
[Ref.: #42696]	Continent	Middle and South America
[Ref.: #42696]	Geographic location	5.7593°/-73.1139°
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Thermal spring

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42696]	Thermoanaerobacterium sp. USBA-019 16S ribosomal RNA gene, partial sequence	KT369738	1335	ENA	1702242 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermoanaerobacterium butyriciformans DSM 101588	GCA_017874545	contig	GenBank	1702242 tax ID	*
[Ref.: #66792]	Thermoanaerobacterium butyriciformans strain DSM 101588	1702242.3	wgs	PATRIC	1702242 tax ID	*
[Ref.: #66792]	Thermoanaerobacterium butyriciformans DSM 101588	2913561130	draft	JGI IMG/M	1702242 tax ID	*

[Ref.: #42696]

GC-content

32.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermoanaerobacterium butyriciformans strain DSM 101588 PATRIC: 1702242.3
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermoanaerobacterium butyriciformans strain DSM 101588 PATRIC: 1702242.3
[Ref.: #69480]	motile	yes	86.467	no
[Ref.: #69480]	gram-positive	no	73.225	no
[Ref.: #69480]	anaerobic	yes	99.271	no
[Ref.: #69480]	aerobic	no	99.085	no
[Ref.: #69480]	halophile	no	96.284	no
[Ref.: #69480]	spore-forming	yes	96.201	no
[Ref.: #69480]	thermophile	yes	99.724	yes
[Ref.: #69480]	glucose-util	yes	90.054	no
[Ref.: #69480]	flagellated	no	75.894	no
[Ref.: #69480]	glucose-ferment	yes	56.631	no

Availability in culture collections External links

[Ref.: #42696]

Culture collection no.

DSM 101588, CMPUJ U-019

[Ref.: #96501]

SI-ID 401764

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of a new anaerobic thermophilic bacterium, Thermoanaerobacterium butyriciformans sp. nov.	Lopez G, Canas-Duarte SJ, Pinzon-Velasco AM, Vega-Vela NE, Rodriguez M, Restrepo S, Baena S	Syst Appl Microbiol	10.1016/j.syapm.2016.11.006	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42696

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101588

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96501

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401764.1 )

* These data were automatically processed and therefore are not curated

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Thermoanaerobacterium butyriciformans strain DSM 101588

Thermoanaerobacterium butyriciformans strain DSM 101588

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