Name: Phaeobacter porticola P97
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140086

Type strain:

Species: Phaeobacter porticola

Strain Designation: P97

Culture col. no.: DSM 103148, LMG 29594

Strain history: <- S. Breider, ICMB, Univ. Oldenburg, Germany; P97 <- S. Breider, Univ. Oldenburg, Germany; P97

NCBI tax ID(s): 1844006 (species)

SI-ID 407334

DSM 103148

Other strains from Phaeobacter porticola

P. porticola P100, DSM 103149, LMG 29595
P. porticola P104, DSM 103150, LMG 29596

Section

Phaeobacter porticola P97 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from barnacle.

colony-forming
Gram-negative
motile
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Phaeobacter*
	Species	**Phaeobacter porticola**
	Full Scientific Name (LPSN)	Phaeobacter porticola Breider et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43321]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.991

[Ref.: #43321]	Cell length	1.2-2.5 µm

[Ref.: #43321]	Cell width	0.8-1.4 µm

[Ref.: #43321]	Motility	yes

[Ref.: #43321]	Flagellum arrangement	polar

[Ref.: #43321]	Colony size	0.5-4 mm
[Ref.: #43321]	Colony color	brown
[Ref.: #43321]	Colony shape	circular
[Ref.: #43321]	Incubation period	5 days
[Ref.: #43321]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Seewater agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Marine broth

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Culture medium growth

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #42693]	growth	30 °C
[Ref.: #43321]	optimum	20-28 °C
[Ref.: #43321]	growth	4-30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43321]			optimum	7-8
[Ref.: #43321]			growth	6.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43321]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

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Name of produced compound

tropodithietic acid (TDA)

	Salt	Tested relation		Salt conc.
[Ref.: #43321]	NaCl		growth	0.5-6	%(w/v)
[Ref.: #43321]	NaCl		optimum	2-4	%(w/v)
[Ref.: #43321]	NaCl	no	growth	0	%(w/v)

[Ref.: #43321]	Observation	Tropodithietic acid (TDA) production
[Ref.: #43321]	Observation	quinone Q10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43321]	arginine ChEBI	+	growth
[Ref.: #43321]	arginine ChEBI	+	carbon source
[Ref.: #43321]	cellobiose ChEBI	+	growth
[Ref.: #43321]	cellobiose ChEBI	+	carbon source
[Ref.: #43321]	citrate ChEBI	+	growth
[Ref.: #43321]	citrate ChEBI	+	carbon source
[Ref.: #43321]	cysteine ChEBI	+	growth
[Ref.: #43321]	cysteine ChEBI	+	carbon source
[Ref.: #43321]	D-aspartate ChEBI	-	growth
[Ref.: #43321]	D-aspartate ChEBI	-	carbon source
[Ref.: #43321]	D-fructose ChEBI	+	growth
[Ref.: #43321]	D-fructose ChEBI	+	carbon source
[Ref.: #43321]	D-galactose ChEBI	+	growth
[Ref.: #43321]	D-galactose ChEBI	+	carbon source
[Ref.: #43321]	D-glucose ChEBI	+	growth
[Ref.: #43321]	D-glucose ChEBI	+	carbon source
[Ref.: #43321]	D-mannitol ChEBI	+	growth
[Ref.: #43321]	D-mannitol ChEBI	+	carbon source
[Ref.: #43321]	D-mannose ChEBI	+	growth
[Ref.: #43321]	D-mannose ChEBI	+	carbon source
[Ref.: #43321]	D-ribose ChEBI	+	growth
[Ref.: #43321]	D-ribose ChEBI	+	carbon source
[Ref.: #43321]	D-sorbitol ChEBI	+	growth
[Ref.: #43321]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43321]	D-xylose ChEBI	+	growth
[Ref.: #43321]	D-xylose ChEBI	+	carbon source
[Ref.: #43321]	glucosamine ChEBI	-	growth
[Ref.: #43321]	glucosamine ChEBI	-	carbon source
[Ref.: #43321]	glycerol ChEBI	+	growth
[Ref.: #43321]	glycerol ChEBI	+	carbon source
[Ref.: #43321]	L-arabinose ChEBI	-	growth
[Ref.: #43321]	L-arabinose ChEBI	-	carbon source
[Ref.: #43321]	L-fucose ChEBI	-	growth
[Ref.: #43321]	L-fucose ChEBI	-	carbon source
[Ref.: #43321]	L-histidine ChEBI	+	growth
[Ref.: #43321]	L-histidine ChEBI	+	carbon source
[Ref.: #43321]	L-leucine ChEBI	+	growth
[Ref.: #43321]	L-leucine ChEBI	+	carbon source
[Ref.: #43321]	L-lysine ChEBI	+	growth
[Ref.: #43321]	L-lysine ChEBI	+	carbon source
[Ref.: #43321]	L-proline ChEBI	+	growth
[Ref.: #43321]	L-proline ChEBI	+	carbon source
[Ref.: #43321]	L-rhamnose ChEBI	-	growth
[Ref.: #43321]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43321]	L-serine ChEBI	+	carbon source
[Ref.: #43321]	L-serine ChEBI	+	growth
[Ref.: #43321]	L-serine	+	carbon source
[Ref.: #43321]	L-threonine ChEBI	+	growth
[Ref.: #43321]	L-threonine ChEBI	+	carbon source
[Ref.: #43321]	L-tryptophan ChEBI	+	growth
[Ref.: #43321]	L-tryptophan ChEBI	+	carbon source
[Ref.: #43321]	lactose ChEBI	-	growth
[Ref.: #43321]	lactose ChEBI	-	carbon source
[Ref.: #43321]	malate ChEBI	-	growth
[Ref.: #43321]	malate ChEBI	-	carbon source
[Ref.: #43321]	maltose ChEBI	+	growth
[Ref.: #43321]	maltose ChEBI	+	carbon source
[Ref.: #43321]	nitrate ChEBI	-	reduction
[Ref.: #43321]	nitrite ChEBI	-	reduction
[Ref.: #43321]	phenylalanine ChEBI	+	growth
[Ref.: #43321]	phenylalanine ChEBI	+	carbon source
[Ref.: #43321]	sodium acetate ChEBI	+	growth
[Ref.: #43321]	sodium acetate ChEBI	+	carbon source
[Ref.: #43321]	sodium pyruvate ChEBI	+	growth
[Ref.: #43321]	sodium pyruvate ChEBI	+	carbon source
[Ref.: #43321]	starch ChEBI	-	hydrolysis
[Ref.: #43321]	succinate ChEBI	+	growth
[Ref.: #43321]	succinate ChEBI	+	carbon source
[Ref.: #43321]	sucrose ChEBI	+	growth
[Ref.: #43321]	sucrose ChEBI	+	carbon source
[Ref.: #43321]	trehalose ChEBI	+	growth
[Ref.: #43321]	trehalose ChEBI	+	carbon source
[Ref.: #43321]	valine ChEBI	+	growth
[Ref.: #43321]	valine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43321]	ampicillin ChEBI	yes
[Ref.: #43321]	chloramphenicol ChEBI	yes
[Ref.: #43321]	gentamicin ChEBI		yes
[Ref.: #43321]	kanamycin ChEBI		yes
[Ref.: #43321]	penicillin ChEBI	yes
[Ref.: #43321]	streptomycin ChEBI		yes

	Enzyme	Enzyme activity	EC number
[Ref.: #43321]	catalase	+	1.11.1.6
[Ref.: #43321]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43321]	gelatinase	-

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43321]

Fatty acid	Percentage
C18:1ω7c	79.2
C16:0	7.5
C18:1ω7c 11-methyl	4.2
C18:0	3.1
C12:1	2.2
C10:0 3OH	1.3
C18:2ω7c, 12	1.3
C12:0 3OH	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42693]	Sample type/isolated from	barnacle
[Ref.: #42693]	Geographic location (country and/or sea, region)	Neuharlingersiel (53° 42' 9.6'' N, 7° 42' 22.8'' E)
[Ref.: #42693]	Country	Germany
[Ref.: #42693]	Country ISO 3 Code	DEU
[Ref.: #42693]	Continent	Europe
[Ref.: #42693]	Geographic location	53.7027°/7.7063°
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Crustacea

What are isolation sources categories?

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Global distribution of 16S sequence KX163077 (>99% sequence identity) for Phaeobacter from Microbeatlas

Aquatic Samples	6774
Soil Samples	318
Animal Samples	295
Plant Samples	82
Total Samples	7469

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42693]	Phaeobacter porticola strain P97 16S ribosomal RNA gene, partial sequence	KX163077	1444	ENA	1844006 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Phaeobacter porticola P97	GCA_001888185	complete	GenBank	1844006 tax ID	*
[Ref.: #66792]	Phaeobacter porticola P97	2718218026	complete	JGI IMG/M	1844006 tax ID	*

[Ref.: #43321]	GC-content	58.6 mol%	genome sequence analysis
[Ref.: #42693]	GC-content	58.6 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Phaeobacter porticola P97 NCBI: GCA_001888185.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phaeobacter porticola P97 NCBI: GCA_001888185.1
[Ref.: #69480]	flagellated	no	57.567	yes
[Ref.: #69480]	gram-positive	no	98.689	yes
[Ref.: #69480]	anaerobic	no	98.777	yes
[Ref.: #69480]	aerobic	yes	92.149	yes
[Ref.: #69480]	halophile	yes	76.672	no
[Ref.: #69480]	spore-forming	no	95.071	no
[Ref.: #69480]	glucose-util	yes	84.948	no
[Ref.: #69480]	thermophile	no	96.289	yes
[Ref.: #69480]	motile	yes	78.609	yes
[Ref.: #69480]	glucose-ferment	no	90.812	no

Availability in culture collections External links

[Ref.: #42693]

Culture collection no.

DSM 103148, LMG 29594

[Ref.: #96498]

SI-ID 407334

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudophaeobacter flagellatus sp. nov., isolated from coastal water.	Guan Y, Jiang Y, Kim YM, Yu SY, Choi SH, Choe H, Li Z, Lee MK	Int J Syst Evol Microbiol	10.1099/ijsem.0.005399	2022	*
Phylogeny	Phaeobacter porticola sp. nov., an antibiotic-producing bacterium isolated from a sea harbour.	Breider S, Freese HM, Sproer C, Simon M, Overmann J, Brinkhoff T	Int J Syst Evol Microbiol	10.1099/ijsem.0.001879	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42693

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103148

#43321

Sven Breider, Heike M. Freese, Cathrin Spröer, Meinhard Simon, Jörg Overmann, Thorsten Brinkhoff: Phaeobacter porticola sp. nov., an antibiotic-producing bacterium isolated from a sea harbour. IJSEM 67: 2153 - 2159 2017 ( DOI 10.1099/ijsem.0.001879 , PubMed 28699865 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96498

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407334.1 )

* These data were automatically processed and therefore are not curated

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