Butyricimonas paravirosa (DSM 105722, 214-4, CCUG 65563)

Name: Butyricimonas paravirosa (DSM 105722, 214-4, CCUG 65563)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140074

Type strain

Strain Designation 214-4

Culture col. no. DSM 105722 214-4 CCUG 65563 JCM 18677

NCBI tax ID(s) 1472417

Special Collections DSMZ CCUG JCM

History DSMZ <- JCM RIKEN BioResource Center, Tsukuba; JCM 18677 <- Y. Tanaka; 214-4 JCM <-- Y. Tanaka 214-4.

Links

Butyricimonas paravirosa 214-4 is an anaerobe bacterium that was isolated from human faeces.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401232

JCM 18677,DSM 105722,CCUG 65563

@ref 20215

Last LPSN update 2026-05-29 08:39:38

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Odoribacteraceae

Genus Butyricimonas

Species Butyricimonas paravirosa

Full scientific name Butyricimonas paravirosa Sakamoto et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	91.486

Colony morphology

63242

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42681	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)		Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42681	positive	growth	37
63242	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
63242	anaerobe
125439	anaerobe	98.963

Spore formation

@ref	Spore formation	Confidence
125439		98.65

Observation

67770

Observationquinones: MK-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Sampling date	Country	Country ISO 3 Code	Continent
42681	human faeces	Homo sapiens		Japan	JPN	Asia
63242	Human feces	Homo sapiens	2010-07-08	Japan	JPN	Asia
67770	Human feces	Homo sapiens

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42681	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3287895v1 assembly for Butyricimonas paravirosa DSM 105722	chromosome	GCA_032878955	1472417.15		1472417	83.13
67770	ASM1192784v1 assembly for Butyricimonas paravirosa DSM 105722	scaffold	GCA_011927845	1472417.6	2830049664	1472417	68.01
66792	ASM1464735v1 assembly for Butyricimonas paravirosa JCM 18677	contig	GCA_014647355	1472417.7	8066053316	1472417	66.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42681	Butyricimonas paravirosa gene for 16S ribosomal RNA, partial sequence, strain: 214-4	AB916502	1486		1472417

GC content

@ref	GC-content (mol%)	Method
67770	44.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3287895v1 assembly for Butyricimonas paravirosa DSM 105722
NCBI: GCA_032878955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.96	no
125439	gram_stain	BacteriaNetⓘ	negative	91.49	no
125439	motility	BacteriaNetⓘ	no	75.19	no
125439	spore_formation	BacteriaNetⓘ	no	98.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Butyricimonas paravirosa strain DSM 105722
PATRIC: 1472417.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	76.49	no
125438	anaerobic	anaerobicⓘ	yes	84.87	yes
125438	spore-forming	spore-formingⓘ	no	87.17	no
125438	thermophilic	thermophileⓘ	no	95.14	no
125438	aerobic	aerobicⓘ	no	89.60	no
125438	flagellated	motile2+ⓘ	no	84.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers.	Tanno H, Fujii T, Hirano K, Maeno S, Tonozuka T, Sakamoto M, Ohkuma M, Tochio T, Endo A.	Gut Microbes	10.1080/19490976.2020.1869503	2021
Genetics	Two new bacteria isolated from vagina of a patient with vaginosis: Atopobium massiliense sp. nov. and Butyricimonas vaginalis sp. nov.	Bordigoni A, Lo CI, Yimagou EK, Nicaise B, Diop K, Raoult D, Desnues C, Fenollar F.	New Microbes New Infect	10.1016/j.nmni.2020.100771	2020
Phylogeny	Butyricimonas faecihominis sp. nov. and Butyricimonas paravirosa sp. nov., isolated from human faeces, and emended description of the genus Butyricimonas.	Sakamoto M, Tanaka Y, Benno Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.065318-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42681	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105722
#63242	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 65563
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Butyricimonas paravirosa (DSM 105722, 214-4, CCUG 65563)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_032878955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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