Name: Chryseomicrobium aureum BUT-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140071

Type strain:

Species: Chryseomicrobium aureum

Strain Designation: BUT-2

Culture col. no.: DSM 105437, CCTCC AB 2013082, KACC 17219

Strain history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik of Korea; KACC 17219 <- J. Zhang, Nanjing Agricultural University, P.R. China; BUT-2

NCBI tax ID(s): 1441723 (species)

SI-ID 397826

DSM 105437

Other strains from Chryseomicrobium aureum

C. aureum CCUG 69542
C. aureum CCUG 70522

Section

Chryseomicrobium aureum BUT-2 is a mesophilic, Gram-positive bacterium that was isolated from activated sludge, herbicide manufacturing wastewater treatment facility.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Chryseomicrobium*
	Species	**Chryseomicrobium aureum**
	Full Scientific Name (LPSN)	Chryseomicrobium aureum Deng et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42678]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #42678]

Culture medium growth

[Ref.: #42678]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42678]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42678]			growth	28 °C

[Ref.: #42678]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.615

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42678]	Sample type/isolated from	activated sludge, herbicide manufacturing wastewater treatment facility
[Ref.: #42678]	Geographic location (country and/or sea, region)	Kunshan, Jiangsu province
[Ref.: #42678]	Country	China
[Ref.: #42678]	Country ISO 3 Code	CHN
[Ref.: #42678]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF781632 (>99% sequence identity) for Planococcaceae from Microbeatlas

Aquatic Samples	118
Soil Samples	34
Animal Samples	390
Plant Samples	9
Total Samples	551

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42678]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42678]	Chryseomicrobium aureum strain BUT-2 16S ribosomal RNA gene, partial sequence	KF781632	1475	ENA	1441723 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseomicrobium aureum DSM 105437	GCA_016909155	contig	GenBank	1441723 tax ID	*
[Ref.: #66792]	Chryseomicrobium aureum strain DSM 105437	1441723.3	wgs	PATRIC	1441723 tax ID	*
[Ref.: #66792]	Chryseomicrobium aureum DSM 105437	2901280419	draft	JGI IMG/M	1441723 tax ID	*

[Ref.: #42678]

GC-content

48.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseomicrobium aureum strain DSM 105437 PATRIC: 1441723.3
[Ref.: #69481]	spore-forming	yes	68	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseomicrobium aureum strain DSM 105437 PATRIC: 1441723.3
[Ref.: #69480]	motile	yes	73.299	no
[Ref.: #69480]	gram-positive	yes	91.052	no
[Ref.: #69480]	anaerobic	no	98.79	no
[Ref.: #69480]	halophile	yes	55.047	no
[Ref.: #69480]	spore-forming	yes	76.368	no
[Ref.: #69480]	thermophile	no	99.494	yes
[Ref.: #69480]	glucose-util	yes	80.705	no
[Ref.: #69480]	aerobic	yes	92.38	no
[Ref.: #69480]	flagellated	yes	53.991	no
[Ref.: #69480]	glucose-ferment	no	91.204	no

Availability in culture collections External links

[Ref.: #42678]

Culture collection no.

DSM 105437, CCTCC AB 2013082, KACC 17219

[Ref.: #96485]

SI-ID 397826

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseomicrobium deserti sp. nov., isolated from desert soil in South Korea.	Lin P, Yan ZF, Li CT, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002264	2017	*
Phylogeny	Chryseomicrobium aureum sp. nov., a bacterium isolated from activated sludge.	Deng SK, Ye XM, Chu CW, Jiang J, He J, Zhang J, Li SP	Int J Syst Evol Microbiol	10.1099/ijs.0.061143-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42678

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105437

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96485

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397826.1 )

* These data were automatically processed and therefore are not curated

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Chryseomicrobium aureum strain DSM 105437

Chryseomicrobium aureum strain DSM 105437

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