Name: Conyzicola lurida HWE2-01
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140070

Type strain:

Species: Conyzicola lurida

Strain Designation: HWE2-01

Culture col. no.: DSM 105784, JCM 19257, KCTC 29231

Strain history: <- SB Kim, Chungnam Natl. Univ.

NCBI tax ID(s): 1172621 (species)

SI-ID 407132

DSM 105784

Section

Conyzicola lurida HWE2-01 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from roots of horseweed Conyza canadensis.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Conyzicola*
	Species	**Conyzicola lurida**
	Full Scientific Name (LPSN)	Conyzicola lurida Kim et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42677]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #42677]

Culture medium growth

[Ref.: #42677]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42677]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #42677]	growth	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #42677]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.491

[Ref.: #67770]

Observation

quinones: MK-10, MK-9, MK-11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42677]	Sample type/isolated from	roots of horseweed Conyza canadensis
[Ref.: #42677]	Host species	Conyza canadensis
[Ref.: #42677]	Country	Republic of Korea
[Ref.: #42677]	Country ISO 3 Code	KOR
[Ref.: #42677]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized root of horseweed (Conyza canadensis)
[Ref.: #67770]	Host species	Conyza canadensis

[Ref.: #67771]	Sample type/isolated from	From root from sulphate of soda
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42677]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42677]	Conyzicola lurida strain HWE2-01 16S ribosomal RNA gene, partial sequence	JQ723714	1457	ENA	1172621 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Conyzicola lurida DSM 105784	GCA_014204935	contig	GenBank	1172621 tax ID	*
[Ref.: #66792]	Conyzicola lurida strain DSM 105784	1172621.4	wgs	PATRIC	1172621 tax ID	*
[Ref.: #66792]	Conyzicola lurida DSM 105784	2870622029	draft	JGI IMG/M	1172621 tax ID	*

[Ref.: #67770]

GC-content

68.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Conyzicola lurida strain DSM 105784 PATRIC: 1172621.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Conyzicola lurida strain DSM 105784 PATRIC: 1172621.4
[Ref.: #69480]	motile	yes	67.473	no
[Ref.: #69480]	gram-positive	yes	91.143	no
[Ref.: #69480]	anaerobic	no	99.231	yes
[Ref.: #69480]	halophile	no	88.41	no
[Ref.: #69480]	spore-forming	no	91.514	no
[Ref.: #69480]	flagellated	no	90.871	no
[Ref.: #69480]	thermophile	no	99.749	yes
[Ref.: #69480]	glucose-util	yes	88.771	no
[Ref.: #69480]	aerobic	yes	91.734	no
[Ref.: #69480]	glucose-ferment	no	86.24	no

Availability in culture collections External links

[Ref.: #42677]

Culture collection no.

DSM 105784, JCM 19257, KCTC 29231

[Ref.: #96484]

SI-ID 407132

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Conyzicola nivalis sp. nov., isolated from glacial snow, and emended description of the genus Conyzicola and Conyzicola lurida.	Gu Z, Liu Y, Xu B, Wang N, Shen L, Liu H, Zhou Y, Xing T, Guo B, Liu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002027	2017	*
Phylogeny	Conyzicola lurida gen. nov., sp. nov., isolated from the root of Conyza canadensis.	Kim TS, Han JH, Joung Y, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.056754-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42677

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105784

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96484

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407132.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Conyzicola lurida in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Conyzicola lurida strain DSM 105784

Conyzicola lurida strain DSM 105784

Change proposal

Change proposal