Conyzicola lurida (DSM 105784, HWE2-01, JCM 19257)

Name: Conyzicola lurida (DSM 105784, HWE2-01, JCM 19257)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140070

Type strain

Strain Designation HWE2-01

Culture col. no. DSM 105784 HWE2-01 JCM 19257 KCTC 29231

NCBI tax ID(s) 1172621

Special Collections DSMZ JCM KCTC

History <- JCM, RIKEN BioResource Center, Tsukuba; JCM 19257 <- S. B. Kim, Chungnam National University, Republik of Korea; HWE2-01 S. B. Kim HWE2-01. <- SB Kim, Chungnam Natl. Univ.

Links

Conyzicola lurida HWE2-01 is an aerobe bacterium that was isolated from roots of horseweed Conyza canadensis.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 407132

KCTC 29231,JCM 19257,DSM 105784

@ref 20215

Last LPSN update 2026-02-09 11:33:31

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Conyzicola

Species Conyzicola lurida

Full scientific name Conyzicola lurida Kim et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	97.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42677	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
42677	positive	growth	25
67770	positive	growth	25
67771	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	obligate aerobe	97.3

Observation

67770

Observationquinones: MK-10, MK-9, MK-11

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent	Geographic location
42677	roots of horseweed Conyza canadensis	Conyza canadensis	Republic of Korea	KOR	Asia
67770	Surface-sterilized root of horseweed (Conyza canadensis)	Conyza canadensis
67771	From root from sulphate of soda		Republic of Korea	KOR	Asia	Daejeon

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42677	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420493v1 assembly for Conyzicola lurida DSM 105784	contig	GCA_014204935	1172621.4	2870622029	1172621	78.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42677	Conyzicola lurida strain HWE2-01 16S ribosomal RNA gene, partial sequence	JQ723714	1457		1172621

GC content

@ref	GC-content (mol%)	Method
67770	68.1	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Conyzicola lurida DSM 105784
NCBI: GCA_014204935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.30	no
125439	gram_stain	BacteriaNetⓘ	positive	97.80	no
125439	motility	BacteriaNetⓘ	no	65.70	no
125439	spore_formation	BacteriaNetⓘ	no	86.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Conyzicola lurida strain DSM 105784
PATRIC: 1172621.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.94	no
125438	anaerobic	anaerobicⓘ	no	96.06	no
125438	spore-forming	spore-formingⓘ	no	68.09	no
125438	aerobic	aerobicⓘ	yes	85.06	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	73.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Conyzicola nivalis sp. nov., isolated from glacial snow, and emended description of the genus Conyzicola and Conyzicola lurida.	Gu Z, Liu Y, Xu B, Wang N, Shen L, Liu H, Zhou Y, Xing T, Guo B, Liu X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002027	2017
Phylogeny	Conyzicola lurida gen. nov., sp. nov., isolated from the root of Conyza canadensis.	Kim TS, Han JH, Joung Y, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.056754-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42677	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105784
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Conyzicola lurida (DSM 105784, HWE2-01, JCM 19257)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014204935

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media