Name: Nocardioides soli mbc-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140067

Type strain:

Species: Nocardioides soli

Strain Designation: mbc-2

Culture col. no.: DSM 105498, CCTCC AB 2012934, KACC 17152, JCM 32088

Strain history: KACC 17152 <-- L.-N. Sun et al.; Coll. of Life Sci., Nanjing Agric. Univ., China; mbc-2.

NCBI tax ID(s): 1036020 (species)

SI-ID 402049

DSM 105498

Section

Nocardioides soli mbc-2 is a mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides soli**
	Full Scientific Name (LPSN)	Nocardioides soli Sun et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42674]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #42674]

Culture medium growth

[Ref.: #42674]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42674]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42674]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #42674]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.805

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42674]	Sample type/isolated from	soil
[Ref.: #42674]	Geographic location (country and/or sea, region)	Changzhou, Jinagsu province
[Ref.: #42674]	Country	China
[Ref.: #42674]	Country ISO 3 Code	CHN
[Ref.: #42674]	Continent	Asia
[Ref.: #42674]	Geographic location	31.7667°/119.9500°

[Ref.: #67770]	Sample type/isolated from	Soil from Changzhou
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jinagsu Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42674]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42674]	Nocardioides soli strain mbc-2 16S ribosomal RNA gene, partial sequence	JF937914	1485	ENA	1036020 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nocardioides soli DSM 105498	GCA_014191495	contig	GenBank	1036020 tax ID	*
[Ref.: #66792]	Nocardioides soli strain DSM 105498	1036020.3	wgs	PATRIC	1036020 tax ID	*
[Ref.: #66792]	Nocardioides soli DSM 105498	2824233761	draft	JGI IMG/M	1036020 tax ID	*

[Ref.: #67770]

GC-content

72 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nocardioides soli strain DSM 105498 PATRIC: 1036020.3
[Ref.: #69481]	spore-forming	yes	51	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nocardioides soli strain DSM 105498 PATRIC: 1036020.3
[Ref.: #69480]	motile	no	67.067	no
[Ref.: #69480]	flagellated	no	94.879	no
[Ref.: #69480]	gram-positive	yes	84.882	no
[Ref.: #69480]	anaerobic	no	98.43	no
[Ref.: #69480]	aerobic	yes	90.521	no
[Ref.: #69480]	halophile	no	97.106	no
[Ref.: #69480]	spore-forming	no	77.368	no
[Ref.: #69480]	thermophile	no	97.45	yes
[Ref.: #69480]	glucose-util	yes	88.97	no
[Ref.: #69480]	glucose-ferment	no	89.084	no

Availability in culture collections External links

[Ref.: #42674]

Culture collection no.

DSM 105498, CCTCC AB 2012934, KACC 17152, JCM 32088

[Ref.: #96481]

SI-ID 402049

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides agrisoli sp. nov., isolated from farmland soil.	Wang X, Jiang WK, Cui MD, Yang ZG, Yu X, Hu G, Zhang H, Hong Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.002158	2017	*
Phylogeny	Nocardioides soli sp. nov., a carbendazim-degrading bacterium isolated from soil under the long-term application of carbendazim.	Sun LN, Zhang J, Gong FF, Wang X, Hu G, Li SP, Hong Q	Int J Syst Evol Microbiol	10.1099/ijs.0.057935-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42674

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105498

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96481

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402049.1 )

* These data were automatically processed and therefore are not curated

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Nocardioides soli strain DSM 105498

Nocardioides soli strain DSM 105498

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