Rhodospirillum rubrum (DSM 467, ATCC 11170, NCIB 8255)

Name: Rhodospirillum rubrum (DSM 467, ATCC 11170, NCIB 8255)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14005

Type strain

Strain Designation S 1, S1

Culture col. no. DSM 467 ATCC 11170 NCIB 8255 CCUG 17859 S 1 5 more

NCBI tax ID(s) 269796 1085

Special Collections DSMZ CCUG CIP

Links

Rhodospirillum rubrum S 1 is an anaerobe, mesophilic, Gram-negative prokaryote of the family Rhodospirillaceae.

Gram-negative motile rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13840

LMG 4362,ATCC 11170,CCUG 17859,CECT 301,NCIB 8255,NCIB 8740,NCIMB 8255,NCIMB8740,KCTC 1372,BCRC 16403,CCRC 16403,NRRL B-3226,DSM 467,CIP 70.61

@ref 20215

Last LPSN update 2025-12-16 09:50:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Rhodospirillaceae

Genus Rhodospirillum

Species Rhodospirillum rubrum

Full scientific name Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 (Approved Lists 1980)

Synonyms (1)

"Spirillum rubrum"

BacDive ID	Other strains from **Rhodospirillum rubrum** (8)	Type strain
14006	R. rubrum G 9, DSM 468
14007	R. rubrum FR.1, DSM 1068
14008	R. rubrum Ha, DSM 107
14009	R. rubrum 1785-1, DSM 11221, DSM 471
14010	R. rubrum 1761-1b, DSM 11222
14011	R. rubrum DSM 50914, ATCC 27048, ICPB 2204
143232	R. rubrum CCUG 17916, ATCC 9791, LMG 2955
143233	R. rubrum CCUG 17917, ATCC 17032, LMG 2956

Morphology

Cell morphology

@ref	Gram stain	Cell shape
122298	negative	rod-shaped
125438	negative
125439	negative

Colony morphology

46704

Incubation period5 days

Multimedia

@ref:	66793
multimedia content:	EM_DSM_467_1.jpg
multimedia.multimedia content:	EM_DSM_467_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
120	RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)	Medium recipe at MediaDive	Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
35750	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122298	CIP Medium 72	Medium recipe at CIP
122298	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
120	positive	growth	28	mesophilic
35750	positive	growth	30	mesophilic
46704	positive	growth	30	mesophilic
122298	positive	growth	15-30
122298	negative	growth	5
122298	negative	growth	37
122298	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
120	anaerobe
46704	aerobe
122298	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		95

Compound production

@ref	Compound
120	carotenoids
120	ubiquinone-10

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122298	NaCl	positive	growth	0-2 %
122298	NaCl		growth	4 %
122298	NaCl		growth	6 %
122298	NaCl		growth	8 %
122298	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122298	16947 ChEBI	citrate	-	carbon source
122298	4853 ChEBI	esculin	+	hydrolysis
122298	17234 ChEBI	glucose	-	fermentation
122298	17234 ChEBI	glucose	+/-	degradation
122298	17716 ChEBI	lactose	-	fermentation
122298	17632 ChEBI	nitrate	-	reduction
122298	17632 ChEBI	nitrate	-	respiration
122298	16301 ChEBI	nitrite	-	reduction
122298	132112 ChEBI	sodium thiosulfate	-	builds gas from

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
122298	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122298	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
122298	15688 ChEBI	acetoin	-
122298	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122298	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122298	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
122298	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122298	caseinase	-	3.4.21.50
122298	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122298	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
122298	gamma-glutamyltransferase	+	2.3.2.2
122298	gelatinase	-
122298	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
122298	lipase	-
68382	lipase (C 14)	-		from API zym
122298	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
122298	ornithine decarboxylase	-	4.1.1.17
122298	oxidase	+
122298	phenylalanine ammonia-lyase	-	4.3.1.24
122298	protease	-
68382	trypsin	-	3.4.21.4	from API zym
122298	tryptophan deaminase	-
122298	tween esterase	-
122298	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	hydrogen production	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	butanoate fermentation	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	L-lactaldehyde degradation	100	3 of 3
66794	cardiolipin biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	photosynthesis	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	starch degradation	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	d-mannose degradation	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	isoleucine metabolism	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	proline metabolism	81.82	9 of 11
66794	vitamin B6 metabolism	81.82	9 of 11
66794	degradation of sugar alcohols	81.25	13 of 16
66794	peptidoglycan biosynthesis	80	12 of 15
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	glutathione metabolism	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	citric acid cycle	78.57	11 of 14
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	methionine metabolism	76.92	20 of 26
66794	alanine metabolism	75.86	22 of 29
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	toluene degradation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	flavin biosynthesis	73.33	11 of 15
66794	metabolism of disaccharids	72.73	8 of 11
66794	histidine metabolism	72.41	21 of 29
66794	glycolysis	70.59	12 of 17
66794	sulfate reduction	69.23	9 of 13
66794	tryptophan metabolism	68.42	26 of 38
66794	cyanate degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	oxidative phosphorylation	63.74	58 of 91
66794	pentose phosphate pathway	63.64	7 of 11
66794	gluconeogenesis	62.5	5 of 8
66794	non-pathway related	60.53	23 of 38
66794	creatinine degradation	60	3 of 5
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	lipid metabolism	58.06	18 of 31
66794	tyrosine metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	nitrate assimilation	55.56	5 of 9
66794	lysine metabolism	54.76	23 of 42
66794	d-xylose degradation	54.55	6 of 11
66794	pyrimidine metabolism	53.33	24 of 45
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	chlorophyll metabolism	50	9 of 18
66794	pantothenate biosynthesis	50	3 of 6
66794	Entner Doudoroff pathway	50	5 of 10
66794	ketogluconate metabolism	50	4 of 8
66794	biotin biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	cholesterol biosynthesis	45.45	5 of 11
66794	O-antigen biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	degradation of pentoses	39.29	11 of 28
66794	polyamine pathway	39.13	9 of 23
66794	degradation of hexoses	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	phenol degradation	30	6 of 20
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carotenoid biosynthesis	27.27	6 of 22
66794	methanogenesis from CO2	25	3 of 12
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	cyclohexanol degradation	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122298	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122298	not determinedn.d.	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence D30778 (>99% sequence identity) for Rhodospirillum rubrum subclade from Microbeatlas

Aquatic Samples	1019
Soil Samples	261
Animal Samples	135
Plant Samples	74
Total Samples	1489

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
120	1	Risk group (German classification) According to TRBA 466
122298	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1308v1 assembly for Rhodospirillum rubrum ATCC 11170	complete	GCA_000013085	269796.9	637000241	269796	97.75
66792	ASM22595v1 assembly for Rhodospirillum rubrum F11	complete	GCA_000225955	1036743.4	2511231162	1036743	97.64
66792	ASM1913455v1 assembly for Rhodospirillum rubrum DSM 467	complete	GCA_019134555	1085.17	8064510199	1085	97.63

Genome browser: GCA_000013085

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Rhodospirillum rubrum gene for 16S ribosomal RNA	D30778	1406		269796
20218	Rhodospirillum rubrum (ATCC 11170) 16S ribosomal RNA (partial)	M55497	263		269796

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Rhodospirillum rubrum DSM 467
NCBI: GCA_019134555

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	63.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	motility	BacteriaNetⓘ	yes	60.70	no
125439	spore_formation	BacteriaNetⓘ	no	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodospirillum rubrum ATCC 11170 ATCC 11170
NCBI: GCA_000013085.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.13	no
125438	anaerobic	anaerobicⓘ	no	60.18	no
125438	aerobic	aerobicⓘ	no	66.20	no
125438	spore-forming	spore-formingⓘ	no	85.16	no
125438	thermophilic	thermophileⓘ	no	95.44	yes
125438	flagellated	motile2+ⓘ	yes	82.68	no

Literature

Title	Authors	Journal	DOI	Year
Microbial synergy between Rhodospirillum rubrum and Acetobacterium woodii enables anaerobic CO conversion to polyhydroxyalkanoates.	Torres Ruano TM, Diender M, Sousa DZ.	Green Chem	10.1039/d5gc01092f	2025
Cultivation driven transcriptomic changes in the wild-type and mutant strains of Rhodospirillum rubrum.	Jureckova K, Nykrynova M, Slaninova E, Fleuriot-Blitman H, Amstutz V, Hermankova K, Bezdicek M, Mrazova K, Hrubanova K, Zinn M, Obruca S, Sedlar K.	Comput Struct Biotechnol J	10.1016/j.csbj.2024.06.023	2024
Detection of Cereibacter azotoformans-YS02 as a Novel Source of Coenzyme Q10 and Its Metabolic Analysis.	Song M, Xu Q, Raka RN, Yin C, Liu X, Yan H.	Antioxidants (Basel)	10.3390/antiox14040429	2025
Anaerobic 3-methylhopanoid production by an acidophilic photosynthetic purple bacterium.	Mayer MH, Parenteau MN, Kempher ML, Madigan MT, Jahnke LL, Welander PV.	Arch Microbiol	10.1007/s00203-021-02561-7	2021
The Fate and Functionality of Alien tRNA Fragments in Culturing Medium and Cells of Escherichia coli.	Shavkunov KS, Markelova NY, Glazunova OA, Kolzhetsov NP, Panyukov VV, Ozoline ON.	Int J Mol Sci	10.3390/ijms241612960	2023
Suppression of Escherichia coli Growth Dynamics via RNAs Secreted by Competing Bacteria.	Markelova N, Glazunova O, Alikina O, Panyukov V, Shavkunov K, Ozoline O.	Front Mol Biosci	10.3389/fmolb.2021.609979	2021
Synthesis Gas (Syngas)-Derived Medium-Chain-Length Polyhydroxyalkanoate Synthesis in Engineered Rhodospirillum rubrum.	Heinrich D, Raberg M, Fricke P, Kenny ST, Morales-Gamez L, Babu RP, O'Connor KE, Steinbuchel A.	Appl Environ Microbiol	10.1128/aem.01744-16	2016
Complete genome sequence of Rhodospirillum rubrum type strain (S1).	Munk AC, Copeland A, Lucas S, Lapidus A, Del Rio TG, Barry K, Detter JC, Hammon N, Israni S, Pitluck S, Brettin T, Bruce D, Han C, Tapia R, Gilna P, Schmutz J, Larimer F, Land M, Kyrpides NC, Mavromatis K, Richardson P, Rohde M, Goker M, Klenk HP, Zhang Y, Roberts GP, Reslewic S, Schwartz DC.	Stand Genomic Sci	10.4056/sigs.1804360	2011
Heterologous expression of glutamyl-tRNA reductase gene in Rhodobacter sphaeroides O.U.001 to enhance 5-aminolevulinic acid production.	Kars G, Alparslan U.	Biotechnol Biotechnol Equip	10.1080/13102818.2014.978170	2014
Inhibition of bacteriochlorophyll biosynthesis in the purple phototrophic bacteria Rhodospirillumrubrum and Rhodobacter capsulatus grown in the presence of a toxic concentration of selenite.	Kessi J, Hortensteiner S.	BMC Microbiol	10.1186/s12866-018-1209-5	2018
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#120	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 467
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#35750	; Curators of the CIP;
#46704	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 17859
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122298	Collection of Institut Pasteur ; Curators of the CIP; CIP 70.61
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodospirillum rubrum (DSM 467, ATCC 11170, NCIB 8255)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

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Culture and growth conditions

Culture medium

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Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

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API zym

API biotype100

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Genome browser: GCA_000013085

16S sequences

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