Name: Telmatobacter bradus TPB6017
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140

Type strain:

Species: Telmatobacter bradus

Strain Designation: TPB6017

Culture col. no.: DSM 23630, VKM B-2570

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; TPB6017 <- T. A. Pankratov

NCBI tax ID(s): 474953 (species)

SI-ID 397823

DSM 23630

Section

Telmatobacter bradus TPB6017 is an anaerobe, chemoorganotroph, psychrophilic bacterium that was isolated from Sphagnum peat.

Gram-negative
motile
rod-shaped
anaerobe
chemoorganotroph
psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Terriglobia*
	Order	*Terriglobales*
	Family	*Acidobacteriaceae*
	Genus	*Telmatobacter*
	Species	**Telmatobacter bradus**
	Full Scientific Name (LPSN)	Telmatobacter bradus Pankratov et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #22887]	Gram stain	negative

[Ref.: #22887]	Cell length	2.0-10.0 µm

[Ref.: #22887]	Cell width	0.4-0.6 µm

[Ref.: #22887]	Cell shape	rod-shaped

[Ref.: #22887]	Motility	yes

[Ref.: #22887]	Colony size	0.3-1.5 mm
[Ref.: #22887]	Incubation period	42-56 days

[Ref.: #22887]	Colony color	milk-white to beige

[Ref.: #17302]	Incubation period	8-14 days

[Ref.: #22887]	Pigment production	no
[Ref.: #22887]	Pigment name	no pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17302]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #17302]

Culture medium growth

[Ref.: #17302]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17302]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17302]	growth	22 °C
[Ref.: #22887]	maximum	35 °C
[Ref.: #22887]	minimum	4 °C
[Ref.: #22887]	optimum	20-28 °C

[Ref.: #17302]	Temperature range	psychrophilic
[Ref.: #22887]	Temperature range	mesophilic
[Ref.: #22887]	Temperature range	psychrophilic

		pH
[Ref.: #22887]	maximum	7.5
[Ref.: #22887]	minimum	3.0
[Ref.: #22887]	optimum	4.5-5.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #17302]	Oxygen tolerance	anaerobe
[Ref.: #22887]	Oxygen tolerance	anaerobe

[Ref.: #22887]

Nutrition type

chemoorganotroph

	Salt	Tested relation		Salt conc.
[Ref.: #22887]	NaCl	no	growth	>0.1	%(w/v)
[Ref.: #22887]	KCl		growth	<0.06	%(w/v)
[Ref.: #22887]	Na2SO4		growth	<0.06	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	alginate ChEBI	-	hydrolysis
[Ref.: #22887]	ammonium ChEBI	+	nitrogen source
[Ref.: #22887]	arbutin ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #22887]	butyrate ChEBI	-	carbon source
[Ref.: #22887]	carboxymethylcellulose ChEBI	-	carbon source
[Ref.: #22887]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #22887]	casamino acids	+	nitrogen source
[Ref.: #22887]	cellobiose ChEBI	+	carbon source
[Ref.: #22887]	chitin ChEBI	-	hydrolysis
[Ref.: #22887]	chondroitin sulfate ChEBI	-	hydrolysis
[Ref.: #22887]	citrate ChEBI	-	carbon source
[Ref.: #22887]	D-arabinose ChEBI	+	carbon source
[Ref.: #22887]	D-fructose ChEBI	+	carbon source
[Ref.: #22887]	D-fucose ChEBI	-	carbon source
[Ref.: #22887]	D-galactose ChEBI	+	carbon source
[Ref.: #22887]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #22887]	D-glucose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #22887]	D-glucuronate ChEBI	+	carbon source
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	D-mannose ChEBI	+	carbon source
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	D-ribose ChEBI	-	carbon source
[Ref.: #22887]	D-xylose ChEBI	+	carbon source
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #22887]	ethanol ChEBI	-	carbon source
[Ref.: #22887]	formate ChEBI	-	carbon source
[Ref.: #22887]	fucoidan ChEBI	-	hydrolysis
[Ref.: #22887]	fumarate ChEBI	-	carbon source
[Ref.: #22887]	galactitol ChEBI	-	carbon source
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	glycine ChEBI	-	nitrogen source
[Ref.: #22887]	heparin ChEBI	-	hydrolysis
[Ref.: #22887]	hexanoate ChEBI	-	carbon source
[Ref.: #22887]	inulin ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	L-arabitol ChEBI	-	carbon source
[Ref.: #22887]	L-arginine ChEBI	-	carbon source
[Ref.: #22887]	L-asparagine ChEBI	-	nitrogen source
[Ref.: #22887]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #22887]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #22887]	L-methionine ChEBI	-	nitrogen source
[Ref.: #22887]	L-proline ChEBI	-	nitrogen source
[Ref.: #22887]	L-rhamnose ChEBI	+	carbon source
[Ref.: #22887]	L-sorbose ChEBI	-	carbon source
[Ref.: #22887]	lactate ChEBI	-	carbon source
[Ref.: #22887]	lactose ChEBI	+	carbon source
[Ref.: #22887]	lactulose ChEBI	+	carbon source
[Ref.: #22887]	laminarin ChEBI	+	hydrolysis
[Ref.: #22887]	leucrose ChEBI	-	carbon source
[Ref.: #22887]	lichenin ChEBI	-	hydrolysis
[Ref.: #22887]	malate ChEBI	-	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	mannitol ChEBI	-	carbon source
[Ref.: #22887]	melezitose ChEBI	+	carbon source
[Ref.: #22887]	melibiose ChEBI	+	carbon source
[Ref.: #22887]	methanol ChEBI	-	carbon source
[Ref.: #22887]	myo-inositol ChEBI	-	carbon source
[Ref.: #22887]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #22887]	nitrate ChEBI	-	nitrogen source
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #22887]	nitrite ChEBI	-	nitrogen source
[Ref.: #22887]	oxalate ChEBI	-	carbon source
[Ref.: #22887]	pectin ChEBI	+	hydrolysis
[Ref.: #22887]	peptone	+	nitrogen source
[Ref.: #22887]	phenylacetate ChEBI	-	carbon source
[Ref.: #22887]	propionate ChEBI	-	carbon source
[Ref.: #22887]	pullulan ChEBI	-	hydrolysis
[Ref.: #22887]	pyruvate ChEBI	+	carbon source
[Ref.: #22887]	raffinose ChEBI	+	carbon source
[Ref.: #22887]	ribitol ChEBI	-	carbon source
[Ref.: #22887]	salicin ChEBI	+	carbon source
[Ref.: #22887]	sorbitol ChEBI	-	carbon source
[Ref.: #22887]	starch ChEBI	+	hydrolysis
[Ref.: #22887]	succinate ChEBI	-	carbon source
[Ref.: #22887]	sucrose ChEBI	+	carbon source
[Ref.: #22887]	threonine ChEBI	-	nitrogen source
[Ref.: #22887]	trehalose ChEBI	-	carbon source
[Ref.: #22887]	tryptophan ChEBI	-	energy source
[Ref.: #22887]	tryptophan ChEBI	-	nitrogen source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #22887]	tyrosine ChEBI	-	nitrogen source
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #22887]	valerate ChEBI	-	carbon source
[Ref.: #22887]	valine ChEBI	-	nitrogen source
[Ref.: #22887]	xylan ChEBI	+	hydrolysis
[Ref.: #22887]	yeast extract	+	nitrogen source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #22887]	ampicillin ChEBI	yes
[Ref.: #22887]	chloramphenicol ChEBI	yes
[Ref.: #22887]	gentamicin ChEBI		yes
[Ref.: #22887]	kanamycin ChEBI		yes
[Ref.: #22887]	lincomycin ChEBI	yes
[Ref.: #22887]	neomycin ChEBI		yes
[Ref.: #22887]	novobiocin ChEBI	yes
[Ref.: #22887]	streptomycin ChEBI		yes

	Metabolite production	Metabolite	Production
[Ref.: #22887]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #22887]		indole ChEBI	-
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #22887]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #22887]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #22887]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #22887]	alpha-fucosidase	+	3.2.1.51
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #22887]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #22887]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #22887]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #22887]	beta-glucosidase	+	3.2.1.21
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API 20NE
[Ref.: #22887]	beta-glucuronidase	+	3.2.1.31
[Ref.: #22887]	cystine arylamidase	-	3.4.11.3
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #22887]	esterase (C 4)	+
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #22887]	esterase lipase (C 8)	-
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #22887]	leucine arylamidase	-	3.4.11.1
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #22887]	lipase (C 14)	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #22887]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #22887]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #22887]	trypsin	-	3.4.21.4
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #22887]	tryptophan deaminase	-	4.1.99.1
[Ref.: #22887]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #22887]	valine arylamidase	+
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #17302]	24920	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #17302]	14209	-	+	-	-	-	-	-	-	-	-	+	+	+/-	+	+/-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17302]	Sample type/isolated from	Sphagnum peat
[Ref.: #17302]	Host species	Sphagnum
[Ref.: #17302]	Geographic location (country and/or sea, region)	West Siberia, Tomsk region, bog Bakchar (56° 51' N 82° 50' E)
[Ref.: #17302]	Country	Russia
[Ref.: #17302]	Country ISO 3 Code	RUS
[Ref.: #17302]	Continent	Europe
[Ref.: #17302]	Geographic location	56.8500°/82.8333°
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Peat moss

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17302]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17302]	Telmatobacter bradus partial 16S rRNA gene, type strain TPB6017T	AM887760	1406	ENA	474953 tax ID

[Ref.: #17302]	GC-content	57.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #22887]	GC-content	57.6 mol%	Thermal denaturation, fluorometry

Availability in culture collections External links

[Ref.: #17302]

Culture collection no.

DSM 23630, VKM B-2570

[Ref.: #69823]

SI-ID 397823

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation.	Garcia-Fraile P, Benada O, Cajthaml T, Baldrian P, Llado S	Appl Environ Microbiol	10.1128/AEM.03353-15	2015	*
Phylogeny	Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991.	Pankratov TA, Kirsanova LA, Kaparullina EN, Kevbrin VV, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijs.0.029629-0	2011	*

References

#17302

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23630

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22887

Timofey A. Pankratov, Lilia A. Kirsanova, Elena N. Kaparullina, Vadim V. Kevbrin, Svetlana N. Dedysh: Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991. IJSEM 62: 430 - 437 2012 ( DOI 10.1099/ijs.0.029629-0 , PubMed 21460138 )

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69823

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397823.1 )

* These data were automatically processed and therefore are not curated

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