Azospirillum doebereinerae (DSM 13131, GSF 71)

Name: Azospirillum doebereinerae (DSM 13131, GSF 71)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13996

Type strain

Culture col. no. DSM 13131 GSF 71

NCBI tax ID(s) 92933

Special Collections DSMZ

Links

Azospirillum doebereinerae DSM 13131 is a mesophilic prokaryote that was isolated from Miscanthus sinensis cv. giganteus, washed roots.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49413

DSM 13131,KCTC 12904,LMG 26176

@ref 20215

Last LPSN update 2025-12-16 09:50:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Azospirillaceae

Genus Azospirillum

Species Azospirillum doebereinerae

Full scientific name Azospirillum doebereinerae Eckert et al. 2001

BacDive ID	Other strains from **Azospirillum doebereinerae** (1)	Type strain
13997	A. doebereinerae Ma4, DSM 13400

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4917	HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)		Medium recipe at MediaDive	Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
4917	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4917	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
4917	Miscanthus sinensis cv. giganteus, washed roots	Miscanthus sinensis	Freising	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4917	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score	INSDC accession
66792	Azospirillum doebereinerae DSM 13131	complete	2828314363	92933	88.08
124043	ASM5043310v1 assembly for Azospirillum doebereinerae DSM 13131	scaffold		92933	57.13	GCA_050433105

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Azospirillum doebereinerae 16S rRNA gene	AJ238567	1303		92933

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Synthesis of the tetrasaccharide repeating unit of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71(T) using linear and one-pot iterative glycosylations.	Gucchait A, Shit P, Misra AK	Beilstein J Org Chem	10.3762/bjoc.16.141	2020
	Structure of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71(T).	Sigida EN, Fedonenko YP, Shashkov AS, Zdorovenko EL, Konnova SA, Knirel YA	Carbohydr Res	10.1016/j.carres.2019.04.009	2019
Phylogeny	Azospirillum thermophilum sp. nov., isolated from a hot spring.	Zhao ZL, Ming H, Ding CL, Ji WL, Cheng LJ, Niu MM, Zhang YM, Zhang LY, Meng XL, Nie GX	Int J Syst Evol Microbiol	10.1099/ijsem.0.003788	2020
Phylogeny	Azospirillum griseum sp. nov., isolated from lakewater.	Yang Y, Zhang R, Feng J, Wang C, Chen J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003460	2019
Phylogeny	Azospirillum thiophilum sp. nov., a diazotrophic bacterium isolated from a sulfide spring.	Lavrinenko K, Chernousova E, Gridneva E, Dubinina G, Akimov V, Kuever J, Lysenko A, Grabovich M	Int J Syst Evol Microbiol	10.1099/ijs.0.018853-0	2010
Phylogeny	Azospirillum doebereinerae sp. nov., a nitrogen-fixing bacterium associated with the C4-grass Miscanthus.	Eckert B, Weber OB, Kirchhof G, Halbritter A, Stoffels M, Hartmann A	Int J Syst Evol Microbiol	10.1099/00207713-51-1-17	2001

References

#4917	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13131
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Azospirillum doebereinerae (DSM 13131, GSF 71)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_050433105

16S sequences

Genome-based predictions

Literature

Literature

References

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