Thiomonas ferrovorans (DSM 25805, FB-6)

Name: Thiomonas ferrovorans (DSM 25805, FB-6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139872

Type strain

Strain Designation FB-6

Culture col. no. DSM 25805 FB-6

Special Collections DSMZ

Thiomonas ferrovorans FB-6 is a mesophilic Proteobacterium that was isolated from creek sediment in a former uranium mining area.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

DSM 25805 FB-6

@ref 42480

Domain Bacteria

Phylum Proteobacteria

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Thiomonas

Species Thiomonas ferrovorans

Full scientific name Thiomonas ferrovorans

Strain designation FB-6

Type strain no

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	92.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
42480	R2A MEDIUM (MICROAEROBIC) (DSMZ Medium 830d)		Medium recipe at MediaDive	Name: R2A MEDIUM (MICROAEROBIC) (DSMZ Medium 830d) Composition: Starch 0.5 g/l Glucose 0.5 g/l Casamino acids 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42480	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.2

Spore formation

@ref	Spore formation	Confidence
125439		90.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
42480	creek sediment in a former uranium mining area	Thuringia, near Ronneburg	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence JN885793 (>99% sequence identity) for Thiomonas from Microbeatlas

Aquatic Samples	391
Soil Samples	92
Animal Samples	36
Plant Samples	79
Total Samples	598

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM37764v1 assembly for Thiomonas sp. FB-6	scaffold	GCA_000377645	1158291.3	2523533526	1158291	63.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42480	Thiomonas sp. FB-6 16S ribosomal RNA gene, partial sequence	JN885793	1386		1158291

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thiomonas sp. FB-6, DSM 25805
IMG: 2523533526

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.30	no
125439	motility	BacteriaNetⓘ	yes	72.10	no
125439	gram_stain	BacteriaNetⓘ	negative	92.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.20	no

Literature

References

#42480	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25805
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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