Name: Pseudomonas lundensis AU1044
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139786

Type strain:

Species: Pseudomonas lundensis

Strain Designation: AU1044

Culture col. no.: DSM 103277, AKU 1044

Strain history: <- B. Scales, Department of Internal Medecin, University of Michigan, Ann Habor, USA; AU1044 <- B. Scales, Medical School, University of Michigan

NCBI tax ID(s): 86185 (species)

SI-ID 399772

DSM 103277

Other strains from Pseudomonas lundensis

P. lundensis 573, 138, DSM 6252, ATCC 49968, ... (type strain)
P. lundensis MFPA15A12-05, CIP 110941
P. lundensis CCUG 29525
P. lundensis CCUG 29526
P. lundensis CCUG 48731
P. lundensis CCUG 49058 A
P. lundensis CCUG 49502
P. lundensis CCUG 60300
P. lundensis CCUG 61608 A

Section

Pseudomonas lundensis AU1044 is a mesophilic bacterium that was isolated from cystic fibrosis sputum.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas lundensis**
	Full Scientific Name (LPSN)	Pseudomonas lundensis Molin et al. 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42394]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #42394]

Culture medium growth

[Ref.: #42394]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42394]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42394]			growth	28 °C

[Ref.: #42394]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #42394]	24466	-	-	-	+	+	-	+	-	+	+	+	-	-	-	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42394]	Sample type/isolated from	cystic fibrosis sputum
[Ref.: #42394]	Country	USA
[Ref.: #42394]	Country ISO 3 Code	USA
[Ref.: #42394]	Continent	North America
[Ref.: #42394]	Geographic location	38.9517°/92.3341°
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Sputum
#Infection	#Disease	#Cystic fibrosis

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42394]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas lundensis AU1044	GCA_001020725	complete	GenBank	86185 tax ID	*
[Ref.: #66792]	Pseudomonas lundensis AU1044	2917003227	complete	JGI IMG/M	86185 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas lundensis AU1044 NCBI: GCA_001020725.1
[Ref.: #69480]	motile	yes	90.189	no
[Ref.: #69480]	flagellated	yes	84.968	no
[Ref.: #69480]	gram-positive	no	98.473	no
[Ref.: #69480]	anaerobic	no	98.217	no
[Ref.: #69480]	aerobic	yes	91.936	no
[Ref.: #69480]	halophile	no	90.212	no
[Ref.: #69480]	spore-forming	no	95.308	no
[Ref.: #69480]	thermophile	no	99.673	yes
[Ref.: #69480]	glucose-util	yes	89.137	yes
[Ref.: #69480]	glucose-ferment	no	88.812	yes
[Ref.: #69480]	motile	yes	90.189	no
[Ref.: #69480]	flagellated	yes	84.968	no
[Ref.: #69480]	gram-positive	no	98.473	no
[Ref.: #69480]	anaerobic	no	98.217	no
[Ref.: #69480]	aerobic	yes	91.936	no
[Ref.: #69480]	halophile	no	90.212	no
[Ref.: #69480]	spore-forming	no	95.308	no
[Ref.: #69480]	thermophile	no	99.673	yes
[Ref.: #69480]	glucose-util	yes	89.137	yes
[Ref.: #69480]	glucose-ferment	no	88.812	yes
[Ref.: #69480]	motile	yes	90.189	no
[Ref.: #69480]	flagellated	yes	84.968	no
[Ref.: #69480]	gram-positive	no	98.473	no
[Ref.: #69480]	anaerobic	no	98.217	no
[Ref.: #69480]	aerobic	yes	91.936	no
[Ref.: #69480]	halophile	no	90.212	no
[Ref.: #69480]	spore-forming	no	95.308	no
[Ref.: #69480]	thermophile	no	99.673	yes
[Ref.: #69480]	glucose-util	yes	89.137	yes
[Ref.: #69480]	glucose-ferment	no	88.812	yes

Availability in culture collections External links

[Ref.: #42394]

Culture collection no.

DSM 103277, AKU 1044

[Ref.: #96229]

SI-ID 399772

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequences of 12 Pseudomonas lundensis Strains Isolated from the Lungs of Humans.	Scales BS, Erb-Downward JR, Falkowski NR, LiPuma JJ, Huffnagle GB	Genome Announc	10.1128/genomeA.01461-17	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42394

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103277

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96229

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399772.1 )

* These data were automatically processed and therefore are not curated

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