Name: Vibrio gangliei SZDIS-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139784

Type strain:

Species: Vibrio gangliei

Strain Designation: SZDIS-1

Culture col. no.: DSM 104291, CGMCC 1.15236

Strain history: <- M. Cai; Institute Of Microbiology, Chinese Academy of Sciences, Beijing, ; SZDIS-1

NCBI tax ID(s): 2077090 (species)

SI-ID 406221

DSM 104291

Section

Vibrio gangliei SZDIS-1 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from sawdust bedding of a pigpen.

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio gangliei**
	Full Scientific Name (LPSN)	Vibrio gangliei Meng et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65396]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.973

[Ref.: #65396]	Cell length	0.8-2.5 µm

[Ref.: #65396]	Cell width	0.5-1.5 µm

[Ref.: #65396]	Cell shape	rod-shaped
[Ref.: #65396]	Cell shape	ovoid-shaped

[Ref.: #65396]	Motility	yes

[Ref.: #65396]	Flagellum arrangement	peritrichous

[Ref.: #65396]	Colony size	2-2.5 mm
[Ref.: #65396]	Colony color	cream
[Ref.: #65396]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42392]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #42392]

Culture medium growth

[Ref.: #42392]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42392]

Culture medium composition

expand / minimize

[Ref.: #65396]

Culture medium

thiosulfate citrate bile salts sucrose agar medium

[Ref.: #65396]

Culture medium growth

		Temperature
[Ref.: #42392]	growth	28 °C
[Ref.: #65396]	growth	10-50 °C
[Ref.: #65396]	optimum	37 °C

[Ref.: #42392]	Temperature range	mesophilic
[Ref.: #65396]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65396]			optimum	8
[Ref.: #65396]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65396]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65396]		NaCl		growth	0-12	%(w/v)
[Ref.: #65396]		NaCl		optimum	3	%(w/v)

[Ref.: #65396]

Observation

When using glucose to produce acid, no gas is produced under anaerobic conditions.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65396]	(S)-lactate ChEBI	+	carbon source
[Ref.: #65396]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #65396]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #65396]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #65396]	acetate ChEBI	+	carbon source
[Ref.: #65396]	acetoacetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #65396]	alginate ChEBI	-	hydrolysis
[Ref.: #65396]	amygdalin ChEBI	-	builds acid from
[Ref.: #65396]	arbutin ChEBI	-	builds acid from
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65396]	casein	-	hydrolysis
[Ref.: #65396]	cellobiose ChEBI	+	builds acid from
[Ref.: #65396]	cellobiose ChEBI	+	carbon source
[Ref.: #65396]	citrate ChEBI	+	carbon source
[Ref.: #65396]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65396]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65396]	D-fructose ChEBI	+	builds acid from
[Ref.: #65396]	D-fructose ChEBI	+	carbon source
[Ref.: #65396]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #65396]	D-fucose ChEBI	-	builds acid from
[Ref.: #65396]	D-galactose ChEBI	+	builds acid from
[Ref.: #65396]	D-galactose ChEBI	+	carbon source
[Ref.: #65396]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #65396]	D-gluconate ChEBI	+	carbon source
[Ref.: #65396]	D-glucose ChEBI	+	builds acid from
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #65396]	D-glucuronate ChEBI	+	carbon source
[Ref.: #65396]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65396]	D-malate ChEBI	+	carbon source
[Ref.: #65396]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65396]	D-mannitol ChEBI	+	carbon source
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #65396]	D-mannose ChEBI	+	builds acid from
[Ref.: #65396]	D-mannose ChEBI	+	carbon source
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #65396]	D-ribose ChEBI	-	builds acid from
[Ref.: #65396]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65396]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65396]	D-xylose ChEBI	-	builds acid from
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #65396]	dextrin ChEBI	+	carbon source
[Ref.: #65396]	dna ChEBI	+	hydrolysis
[Ref.: #65396]	erythritol ChEBI	-	builds acid from
[Ref.: #65396]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #65396]	esculin ferric citrate	-	builds acid from
[Ref.: #65396]	galactitol ChEBI	-	builds acid from
[Ref.: #65396]	gelatin ChEBI	-	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65396]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #65396]	glucose ChEBI	+	fermentation
[Ref.: #65396]	glucuronamide ChEBI	+	carbon source
[Ref.: #65396]	glucuronamide ChEBI	+	energy source
[Ref.: #65396]	glucuronamide ChEBI	+	nitrogen source
[Ref.: #65396]	glycerol ChEBI	-	builds acid from
[Ref.: #65396]	glycerol ChEBI	+	carbon source
[Ref.: #65396]	glycine-proline ChEBI	+	carbon source
[Ref.: #65396]	glycine-proline ChEBI	+	energy source
[Ref.: #65396]	glycine-proline ChEBI	+	nitrogen source
[Ref.: #65396]	glycogen ChEBI	+	builds acid from
[Ref.: #65396]	inosine ChEBI	+	carbon source
[Ref.: #65396]	inulin ChEBI	-	builds acid from
[Ref.: #65396]	L-alanine ChEBI	+	carbon source
[Ref.: #65396]	L-alanine ChEBI	+	energy source
[Ref.: #65396]	L-alanine ChEBI	+	nitrogen source
[Ref.: #65396]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #65396]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65396]	L-aspartate ChEBI	+	carbon source
[Ref.: #65396]	L-aspartate ChEBI	+	energy source
[Ref.: #65396]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #65396]	L-fucose ChEBI	-	builds acid from
[Ref.: #65396]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #65396]	L-glutamate ChEBI	+	carbon source
[Ref.: #65396]	L-glutamate ChEBI	+	energy source
[Ref.: #65396]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #65396]	L-malate ChEBI	+	carbon source
[Ref.: #65396]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65396]	L-serine ChEBI	+	carbon source
[Ref.: #65396]	L-serine ChEBI	+	energy source
[Ref.: #65396]	L-serine ChEBI	+	nitrogen source
[Ref.: #65396]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65396]	L-xylose ChEBI	-	builds acid from
[Ref.: #65396]	lactose ChEBI	-	builds acid from
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #65396]	maltose ChEBI	+	builds acid from
[Ref.: #65396]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #65396]	melezitose ChEBI	-	builds acid from
[Ref.: #65396]	melibiose ChEBI	-	builds acid from
[Ref.: #65396]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65396]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65396]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65396]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #65396]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #65396]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65396]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65396]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65396]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #65396]	N-acetylglucosamine ChEBI	+	nitrogen source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #65396]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #65396]	nitrite ChEBI	+	reduction
[Ref.: #65396]	pectin ChEBI	+	carbon source
[Ref.: #65396]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65396]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65396]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65396]	propionate ChEBI	+	carbon source
[Ref.: #65396]	raffinose ChEBI	-	builds acid from
[Ref.: #65396]	ribitol ChEBI	-	builds acid from
[Ref.: #65396]	salicin ChEBI	-	builds acid from
[Ref.: #65396]	salicin ChEBI	+	carbon source
[Ref.: #65396]	starch ChEBI	+	builds acid from
[Ref.: #65396]	starch ChEBI	+	hydrolysis
[Ref.: #65396]	sucrose ChEBI	+	builds acid from
[Ref.: #65396]	sucrose ChEBI	+	carbon source
[Ref.: #65396]	trehalose ChEBI	-	builds acid from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #65396]	turanose ChEBI	-	builds acid from
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65396]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65396]	acetoin ChEBI	no
[Ref.: #65396]	hydrogen sulfide ChEBI	no
[Ref.: #65396]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #65396]	acetoin ChEBI	-
[Ref.: #65396]	glucose ChEBI		+
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #65396]	acid phosphatase	-	3.1.3.2
[Ref.: #65396]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65396]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65396]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65396]	alpha-glucuronidase	-	3.2.1.139
[Ref.: #65396]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #65396]	beta-galactosidase	+	3.2.1.23
[Ref.: #65396]	beta-glucosidase	-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #65396]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65396]	catalase	+	1.11.1.6
[Ref.: #65396]	cystine arylamidase	-	3.4.11.3
[Ref.: #65396]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #65396]	esterase (C 4)	+
[Ref.: #65396]	esterase Lipase (C 8)	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #65396]	leucine arylamidase	-	3.4.11.1
[Ref.: #65396]	lipase	-
[Ref.: #65396]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65396]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65396]	trypsin	-	3.4.21.4
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #65396]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #42392]	24529	+	-	+	-	-	+	-	+	-	+	+	-	-	-	+	+	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42392]	Sample type/isolated from	sawdust bedding of a pigpen
[Ref.: #42392]	Geographic location (country and/or sea, region)	Fujian Province, Xiamen
[Ref.: #42392]	Country	China
[Ref.: #42392]	Country ISO 3 Code	CHN
[Ref.: #42392]	Continent	Asia

[Ref.: #65396]	Sample type/isolated from	sawdust bedding in a pigpen
[Ref.: #65396]	Geographic location (country and/or sea, region)	Xiamen, Fujian province
[Ref.: #65396]	Country	China
[Ref.: #65396]	Country ISO 3 Code	CHN
[Ref.: #65396]	Continent	Asia
[Ref.: #65396]	Enrichment culture	R2A
[Ref.: #65396]	Enrichment culture duration	7 days
[Ref.: #65396]	Enrichment culture temperature	30 ̊C
[Ref.: #65396]	Isolation/enrichment procedure	10-fold dilution plating
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Host	#Mammals	#Suidae (Pig,Swine)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY228998 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	82
Soil Samples	4
Animal Samples	81
Plant Samples	11
Total Samples	178

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #42392]	Vibrio sp. strain SZDIS-1 16S ribosomal RNA gene, partial sequence	KY228998	1463	ENA	2077090 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vibrio gangliei SZDIS-1	GCA_002934045	scaffold	GenBank	2077090 tax ID	*
[Ref.: #66792]	Vibrio gangliei strain SZDIS-1	2077090.3	wgs	PATRIC	2077090 tax ID	*
[Ref.: #66792]	Vibrio gangliei SZDIS-1	2882410081	draft	JGI IMG/M	2077090 tax ID	*

[Ref.: #65396]

GC-content

43 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vibrio gangliei SZDIS-1 NCBI: GCA_002934045.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio gangliei SZDIS-1 NCBI: GCA_002934045.1
[Ref.: #69480]	flagellated	no	61.982	yes
[Ref.: #69480]	gram-positive	no	98.397	yes
[Ref.: #69480]	anaerobic	no	99.107	no
[Ref.: #69480]	aerobic	yes	77.938	yes
[Ref.: #69480]	halophile	yes	77.883	no
[Ref.: #69480]	spore-forming	no	95.585	no
[Ref.: #69480]	glucose-util	yes	90.161	yes
[Ref.: #69480]	thermophile	no	99.652	yes
[Ref.: #69480]	motile	no	54.128	yes
[Ref.: #69480]	glucose-ferment	yes	86.471	yes

Availability in culture collections External links

[Ref.: #42392]

Culture collection no.

DSM 104291, CGMCC 1.15236

[Ref.: #96227]

SI-ID 406221

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio gangliei sp. nov., a novel member of Vibrionaceae isolated from sawdust in a pigpen.	Meng YC, Liu HC, Zhou YG, Cai M, Kang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002779	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42392

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104291

#65396

Yu-Chen Meng, Hong-Can Liu, Yu-Guang Zhou, Man Cai, Yingqian Kang: Vibrio gangliei sp. nov., a novel member of Vibrionaceae isolated from sawdust in a pigpen. IJSEM 68: 1969 - 1974 2018 ( DOI 10.1099/ijsem.0.002779 , PubMed 29676719 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96227

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406221.1 )

* These data were automatically processed and therefore are not curated

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