Name: Nitrospirillum amazonense Am 14(Y1)
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13969

Type strain:

Species: Nitrospirillum amazonense

Strain Designation: Am 14(Y1), Y-1

Culture col. no.: DSM 2787, ATCC 35119

Strain history: <- ATCC <- N.R. Krieg, Y-1 <- J. Döbereiner

NCBI tax ID(s): 28077 (species)

Other strains from Nitrospirillum amazonense

N. amazonense Am 18, Y-2, DSM 2788, ATCC 35120
N. amazonense Am 30, Y-6, DSM 2789, ATCC 35121
N. amazonense CCUG 45017, LMG 6509

Section

Nitrospirillum amazonense Am 14 is a mesophilic bacterium that was isolated from Digitaria decumbens roots.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Nitrospirillum*
	Species	**Nitrospirillum amazonense**
	Full Scientific Name (LPSN)	Nitrospirillum amazonense (Magalhães et al. 1984) Lin et al. 2015

Synonym

Azospirillum amazonense

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1227]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #1227]

Culture medium growth

[Ref.: #1227]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1227]

Culture medium

HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)

[Ref.: #1227]

Culture medium growth

[Ref.: #1227]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1227]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1227]			growth	28 °C
[Ref.: #1227]			growth	30 °C

[Ref.: #1227]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1227]	Sample type/isolated from	Digitaria decumbens roots
[Ref.: #1227]	Host species	Digitaria decumbens
[Ref.: #1227]	Country	Brazil
[Ref.: #1227]	Country ISO 3 Code	BRA
[Ref.: #1227]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU256437 (>99% sequence identity) for Nitrospirillum amazonense subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	13
Animal Samples	2
Plant Samples	11
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1227]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1227]	Azospirillum amazonense strain DSM 2787 16S ribosomal RNA gene, partial sequence	GU256437	1428	ENA	28077 tax ID
[Ref.: #20218]	A.amazonense (DSM 2787) 16S rRNA gene	X79735	1433	ENA	28077 tax ID	*
[Ref.: #20218]	A.amazonense (DSM 2787) 16S ribosomal RNA	Z29616	1457	ENA	28077 tax ID	*
[Ref.: #20218]	Azospirillum amazonense strain LMG 22237 16S ribosomal RNA gene, partial sequence	KC109787	1413	ENA	28077 tax ID	*

[Ref.: #1227]

GC-content

67 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #1227]

Culture collection no.

DSM 2787, ATCC 35119

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrospirillum irinus sp. nov., a diazotrophic bacterium isolated from the rhizosphere soil of Iris and emended description of the genus Nitrospirillum.	Chung EJ, Park TS, Kim KH, Jeon CO, Lee HI, Chang WS, Aslam Z, Chung YR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0528-x	2015	*
Phylogeny	Description of Niveispirillum fermenti gen. nov., sp. nov., isolated from a fermentor in Taiwan, transfer of Azospirillum irakense (1989) as Niveispirillum irakense comb. nov., and reclassification of Azospirillum amazonense (1983) as Nitrospirillum amazonense gen. nov.	Lin SY, Hameed A, Shen FT, Liu YC, Hsu YH, Shahina M, Lai WA, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0176-6	2014	*
Phylogeny	Rapid detection and identification of the free-living nitrogen fixing genus Azospirillum by 16S rRNA-gene-targeted genus-specific primers.	Lin SY, Shen FT, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-011-9558-1	2011	*

References

#1227

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2787

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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