Name: Thalassospira profundimaris WPO 211
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13967

Type strain:

Species: Thalassospira profundimaris

Strain Designation: WPO 211, WP0211

Culture col. no.: DSM 17430, CGMCC 1.3997, CIP 109532

Strain history: CIP <- 2007, DSMZ <- Z. Shao, Marine Biogen. Res., China: strain WP0211

NCBI tax ID(s): 502049 (species)

SI-ID 297360

CGMCC 1.3997, DSM 17430, CIP 109532

Section

Thalassospira profundimaris WPO 211 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from deep sea sediment sample.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Thalassospiraceae*
	Genus	*Thalassospira*
	Species	**Thalassospira profundimaris**
	Full Scientific Name (LPSN)	Thalassospira profundimaris Liu et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31858]	Gram stain	negative
[Ref.: #121958]	Gram stain	negative

[Ref.: #31858]	Cell length	1.55 µm

[Ref.: #31858]	Cell width	0.55 µm

[Ref.: #31858]	Cell shape	rod-shaped
[Ref.: #121958]	Cell shape	rod-shaped

[Ref.: #31858]	Motility	no
[Ref.: #121958]	Motility	yes

[Ref.: #31858]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6982]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6982]

Culture medium growth

[Ref.: #6982]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6982]

Culture medium composition

expand / minimize

[Ref.: #37758]

Culture medium

Marine agar (MA)

[Ref.: #37758]

Culture medium growth

[Ref.: #37758]

Culture medium composition

expand / minimize

[Ref.: #121958]

Culture medium

CIP Medium 13

[Ref.: #121958]

Culture medium growth

[Ref.: #121958]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6982]	growth	25 °C
[Ref.: #31858]	growth	10-37 °C
[Ref.: #31858]	optimum	22 °C
[Ref.: #37758]	growth	25 °C

[Ref.: #6982]	Temperature range	mesophilic
[Ref.: #31858]	Temperature range	psychrophilic
[Ref.: #37758]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31858]

Oxygen tolerance

anaerobe

[Ref.: #31858]	Ability of spore formation	no
[Ref.: #121958]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31858]		NaCl		growth	02-08	%
[Ref.: #31858]		NaCl		optimum	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31858]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #31858]	alanine ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	formate ChEBI	+	carbon source
[Ref.: #31858]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	galacturonate ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	gluconate ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	glucose ChEBI	+	carbon source
[Ref.: #31858]	glutamate ChEBI	+	carbon source
[Ref.: #31858]	glycerol ChEBI	+	carbon source
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	histidine ChEBI	+	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	L-arabitol ChEBI	+	carbon source
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	lactate ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	mannitol ChEBI	+	carbon source
[Ref.: #31858]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	nitrate ChEBI	+	reduction
[Ref.: #121958]	nitrate ChEBI	-	reduction
[Ref.: #121958]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	proline ChEBI	+	carbon source
[Ref.: #31858]	propionate ChEBI	+	carbon source
[Ref.: #31858]	quinate ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	succinate ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31858]	tween 40 ChEBI	+	carbon source
[Ref.: #31858]	tween 80 ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121958]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31858]	catalase	+	1.11.1.6
[Ref.: #121958]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31858]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121958]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121958]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121958]	11582	not determinedn.d.	+/-	-	-	+/-	-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121958]	11934	-	+	+	-	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6982]	Sample type/isolated from	deep sea sediment sample
[Ref.: #6982]	Geographic location (country and/or sea, region)	West Pacific

[Ref.: #121958]	Sample type/isolated from	Environment, Deep sea, sediment sample, collected by a multi-core sampler from the West Pacific (region 973, station WP02-3, water depth 4480 m) during cruise DY105-13 of the vessel HAIYANG Number 4 in 2002
[Ref.: #121958]	Sampling date	2002
[Ref.: #121958]	Country	Pacific Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY186195 (>99% sequence identity) for Thalassospira from Microbeatlas

Aquatic Samples	7649
Soil Samples	540
Animal Samples	378
Plant Samples	159
Total Samples	8726

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6982]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121958]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6982]	Thalassospira profundimaris strain WP0211 16S ribosomal RNA gene, partial sequence	AY186195	1457	ENA	1177928 tax ID

[Ref.: #6982]

GC-content

47 mol%

Availability in culture collections External links

[Ref.: #6982]

Culture collection no.

DSM 17430, CGMCC 1.3997, CIP 109532

[Ref.: #83139]

SI-ID 297360

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov.	Liu C, Wu Y, Li L, Ma Y, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.64544-0	2007	*

References

#6982

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17430

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31858

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28121 (see below)

#37758 ; Curators of the CIP;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83139

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297360.1 )

#121958 Collection of Institut Pasteur ; Curators of the CIP; CIP 109532

#28121

IJSEM 316 2007 ( DOI 10.1099/ijs.0.64544-0 , PubMed 17267971 )

* These data were automatically processed and therefore are not curated

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