Thalassospira lucentensis QMT2 | Type strain | DSM 14000, CECT 5290 | BacDiveID:13965

Strain identifier

BacDive ID: 13965

Type strain:

Species: Thalassospira lucentensis

Strain Designation: QMT2

Culture col. no.: DSM 14000, CECT 5290

Strain history: <- A. López-López; QMT2

NCBI tax ID(s): 1123365 (strain), 168935 (species)

SI-ID 100995

CECT 5390, CECT 5290, DSM 14000

Section

Thalassospira lucentensis QMT2 is a psychrophilic, motile bacterium that was isolated from sea water from a depth of 100 m.

motile
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Thalassospiraceae*
	Genus	*Thalassospira*
	Species	**Thalassospira lucentensis**
	Full Scientific Name (LPSN)	Thalassospira lucentensis López-López et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #69480]	Motility	yes Confidence in %96.527

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5212]			growth	13 °C

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5212]	Sample type/isolated from	sea water from a depth of 100 m
[Ref.: #5212]	Geographic location (country and/or sea, region)	Mediterranean Sea 21NM off Alicante
[Ref.: #5212]	Country	Spain
[Ref.: #5212]	Country ISO 3 Code	ESP
[Ref.: #5212]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Global distribution of 16S sequence AM294944 (>99% sequence identity) for Thalassospira from Microbeatlas

Aquatic Samples	727
Soil Samples	39
Animal Samples	61
Plant Samples	6
Total Samples	833

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thalassospira lucentensis partial 16S rRNA gene, type strain DSM 14000T	AM294944	1457	ENA	1123365 tax ID	*
[Ref.: #20218]	Thalassospira lucentensis strain QMT2 16S ribosomal RNA gene, partial sequence	AF358664	1394	ENA	1123365 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thalassospira lucentensis MCCC 1A00383 = DSM 14000	GCA_000421265	contig	GenBank	1123365 tax ID	*
[Ref.: #66792]	Thalassospira lucentensis MCCC 1A00383 = DSM 14000	GCA_003326595	contig	GenBank	1123365 tax ID	*
[Ref.: #66792]	Thalassospira lucentensis MCCC 1A00383 = DSM 14000	1123365.5	wgs	PATRIC	1123365 tax ID	*
[Ref.: #66792]	Thalassospira lucentensis QMT2 = DSM 14000	1123365.3	wgs	PATRIC	1123365 tax ID	*
[Ref.: #66792]	Thalassospira lucentensis DSM 14000	2526164517	draft	JGI IMG/M	1123365 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thalassospira lucentensis QMT2 = DSM 14000 PATRIC: 1123365.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thalassospira lucentensis MCCC 1A00383 = DSM 14000 PATRIC: 1123365.5
[Ref.: #69480]	motile	yes	93.827	no
[Ref.: #69480]	flagellated	yes	84.06	no
[Ref.: #69480]	gram-positive	no	98.962	no
[Ref.: #69480]	anaerobic	no	98.074	no
[Ref.: #69480]	aerobic	yes	79.47	no
[Ref.: #69480]	halophile	yes	51.368	no
[Ref.: #69480]	spore-forming	no	94.467	no
[Ref.: #69480]	thermophile	no	98.326	yes
[Ref.: #69480]	glucose-util	yes	92.808	no
[Ref.: #69480]	glucose-ferment	no	85.585	no

Availability in culture collections External links

Culture collection no.

DSM 14000, CECT 5290

SI-ID 100995

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Predominant strains of polycyclic aromatic hydrocarbon-degrading consortia from deep sea of the Middle Atlantic Ridge].	Cui Z, Shao Z	Wei Sheng Wu Xue Bao		2009	*
Phylogeny	Thalassospira tepidiphila sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from seawater.	Kodama Y, Stiknowati LI, Ueki A, Ueki K, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijs.0.65476-0	2008	*
Phylogeny	Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the alpha-Proteobacteria.	Lopez-Lopez A, Pujalte MJ, Benlloch S, Mata-Roig M, Rossello-Mora R, Garay E, Rodriguez-Valera F	Int J Syst Evol Microbiol	10.1099/00207713-52-4-1277	2002	*

References

#5212

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14000

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100995.1 )

* These data were automatically processed and therefore are not curated

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