Name: Roseospira visakhapatnamensis JA131
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13963

Type strain:

Species: Roseospira visakhapatnamensis

Strain Designation: JA131

Culture col. no.: DSM 19947, ATCC BAA-1365, JCM 14190

Strain history: Ch. Sasikala JA131.

NCBI tax ID(s): 390880 (species)

SI-ID 319391

ATCC BAA-1365, JCM 14190

Section

Roseospira visakhapatnamensis JA131 is an obligate anaerobe, mesophilic, Gram-negative bacterium that was isolated from tidal water samples from a fishing harbour .

Gram-negative
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Roseospira*
	Species	**Roseospira visakhapatnamensis**
	Full Scientific Name (LPSN)	Roseospira visakhapatnamensis Kalyan Chakravarthy et al. 2007

Synonym

"Rhodospira visakhapatnamensis"

Information on morphological and physiological properties Morphology

[Ref.: #32197]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #32197]	Cell length	4 µm

[Ref.: #32197]	Cell width	0.7 µm

[Ref.: #32197]	Motility	no

[Ref.: #32197]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32197]	growth	25-35 °C
[Ref.: #32197]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #32197]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32197]			optimum	7
[Ref.: #32197]			growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8404]	Oxygen tolerance	obligate anaerobe
[Ref.: #32197]	Oxygen tolerance	facultative aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.93

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32197]		NaCl		growth	01-05	%
[Ref.: #32197]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32197]	aspartate ChEBI	+	carbon source
[Ref.: #32197]	glutamate ChEBI	+	carbon source
[Ref.: #32197]	mannitol ChEBI	+	carbon source
[Ref.: #32197]	pyruvate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8404]	Sample type/isolated from	tidal water samples from a fishing harbour (17° 41' N 83° 18' E)
[Ref.: #8404]	Geographic location (country and/or sea, region)	East coast, Visakhapatnam
[Ref.: #8404]	Country	India
[Ref.: #8404]	Country ISO 3 Code	IND
[Ref.: #8404]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water samples from a fishing harbour at Visakhapatnam, a city which faces into the Bay of Bengal and is on the East coast of India
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM282560 (>99% sequence identity) for Roseospira visakhapatnamensis subclade from Microbeatlas

Aquatic Samples	11
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	12

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8404]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8404]	Roseospira visakhapatnamensis 16S rRNA gene, type strain JA131T	AM282560	1388	ENA	390880 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseospira visakhapatnamensis JA131	GCA_014197915	scaffold	GenBank	390880 tax ID	*
[Ref.: #66792]	Roseospira visakhapatnamensis DSM 19947	2838118685	draft	JGI IMG/M	390880 tax ID	*

[Ref.: #8404]	GC-content	67.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32197]	GC-content	67 mol%
[Ref.: #67770]	GC-content	67 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseospira visakhapatnamensis JA131 NCBI: GCA_014197915.1
[Ref.: #69481]	spore-forming	no	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseospira visakhapatnamensis JA131 NCBI: GCA_014197915.1
[Ref.: #69480]	flagellated	yes	64.745	no
[Ref.: #69480]	gram-positive	no	98.671	no
[Ref.: #69480]	anaerobic	yes	71.496	no
[Ref.: #69480]	aerobic	no	93.975	yes
[Ref.: #69480]	halophile	no	67.684	no
[Ref.: #69480]	spore-forming	no	89.635	no
[Ref.: #69480]	glucose-util	yes	78.003	no
[Ref.: #69480]	thermophile	no	92.457	yes
[Ref.: #69480]	motile	yes	86.511	no
[Ref.: #69480]	glucose-ferment	no	86.83	no

Availability in culture collections External links

[Ref.: #8404]

Culture collection no.

DSM 19947, ATCC BAA-1365, JCM 14190

[Ref.: #83135]

SI-ID 319391

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseospira visakhapatnamensis sp. nov. and Roseospira goensis sp. nov.	Kalyan Chakravarthy S, Srinivas TNR, Anil Kumar P, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.65105-0	2007	*

References

#8404

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19947

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32197

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28439 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83135

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319391.1 )

#28439

IJSEM 2453 2007 ( DOI 10.1099/ijs.0.65105-0 , PubMed 17978198 )

* These data were automatically processed and therefore are not curated

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