Name: Roseospira goensis JA135
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13962

Type strain:

Species: Roseospira goensis

Strain Designation: JA135

Culture col. no.: DSM 18985, ATCC BAA-1364, JCM 14191

Strain history: Ch. Sasikala JA135.

NCBI tax ID(s): 391922 (species)

SI-ID 319390

ATCC BAA-1364, JCM 14191, DSM 18985

Special Collections

Section

Roseospira goensis JA135 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from sediment samples from the marine saltern Kurka .

Gram-negative
motile
spiral-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Roseospira*
	Species	**Roseospira goensis**
	Full Scientific Name (LPSN)	Roseospira goensis Kalyan Chakravarthy et al. 2007

Synonym

"Rhodospira goensis"

Information on morphological and physiological properties Morphology

[Ref.: #32197]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.5

[Ref.: #32197]	Cell length	5.5 µm

[Ref.: #32197]	Cell width	0.9 µm

[Ref.: #32197]	Cell shape	spiral-shaped

[Ref.: #32197]	Motility	yes

[Ref.: #32197]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #32197]	growth	25-35 °C
[Ref.: #32197]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #32197]			optimum	7.5
[Ref.: #32197]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7816]	Oxygen tolerance	anaerobe
[Ref.: #32197]	Oxygen tolerance	facultative aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32197]		NaCl		growth	01-05	%
[Ref.: #32197]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32197]	acetate ChEBI	+	carbon source
[Ref.: #32197]	formate ChEBI	+	carbon source
[Ref.: #32197]	glucose ChEBI	+	carbon source
[Ref.: #32197]	glycerol ChEBI	+	carbon source
[Ref.: #32197]	lactate ChEBI	+	carbon source
[Ref.: #32197]	malate ChEBI	+	carbon source
[Ref.: #32197]	pyruvate ChEBI	+	carbon source
[Ref.: #32197]	valerate ChEBI	+	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7816]	Sample type/isolated from	sediment samples from the marine saltern Kurka (15° 29' N 73° 49' E)
[Ref.: #7816]	Geographic location (country and/or sea, region)	West coast, Arabian Sea, Goa
[Ref.: #7816]	Country	India
[Ref.: #7816]	Country ISO 3 Code	IND
[Ref.: #7816]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment samples from a marine saltern, Goa, facing the Arabian sea on the West coast of India
[Ref.: #67770]	Country	Indian Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM283537 (>99% sequence identity) for Roseospira goensis subclade from Microbeatlas

Aquatic Samples	5
Soil Samples	2
Animal Samples
Plant Samples
Total Samples	7

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7816]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Roseospira goensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 14191	LC311072	1418	GenBank ENA	391922 tax ID
[Ref.: #7816]	Roseospira goensis partial 16S rRNA gene, strain JA135T	AM283537	1404	GenBank ENA	391922 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseospira goensis JA135	GCA_014197795	scaffold	GenBank ENA	391922 tax ID	*
[Ref.: #66792]	Roseospira goensis DSM 18985	2838110688	draft	JGI IMG/M	391922 tax ID	*

[Ref.: #7816]	GC-content	71.0 mol%
[Ref.: #32197]	GC-content	71 mol%
[Ref.: #67770]	GC-content	71 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseospira goensis JA135 NCBI: GCA_014197795.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	86	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseospira goensis JA135 NCBI: GCA_014197795.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	61.505	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	62.729	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.125	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.721	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.561	no

Availability in culture collections External links

[Ref.: #7816]

Culture collection no.

DSM 18985, ATCC BAA-1364, JCM 14191

[Ref.: #83134]

SI-ID 319390

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseospira visakhapatnamensis sp. nov. and Roseospira goensis sp. nov.	Kalyan Chakravarthy S, Srinivas TNR, Anil Kumar P, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.65105-0	2007	*

References

#7816

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18985

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32197

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28439 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83134

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319390.1 )

#28439

IJSEM 2453 2007 ( DOI 10.1099/ijs.0.65105-0 , PubMed 17978198 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Roseospira goensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF