Pseudoalteromonas piscicida (CIP 103300, ATCC 15057, NCIMB 1142)

Name: Pseudoalteromonas piscicida (CIP 103300, ATCC 15057, NCIMB 1142)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139570

Type strain

Strain Designation MB-1

Culture col. no. CIP 103300 ATCC 15057 NCIMB 1142 NRRL B-3099 NBRC 103038 3 more

NCBI tax ID(s) 1279016 43662

Special Collections JCM CIP

History IAM 12932 <-- ATCC 15057 <-- J. D. Buck MB-1 <-- S. P. Meyers. CIP <- 1989, NCIB <- 1963, ATCC <- J. D. Buck: strain MB-1 <- S. Meyers

Links

Pseudoalteromonas piscicida MB-1 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from Red-tide seawater from South Florida.

Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 36250

ATCC 15057,NCMB 1142,CCUG 16060,CIP 103300,NCIMB 1142,IAM12932,NRRL B-3099,JCM 20779,NBRC 103038

@ref 20215

Last LPSN update 2026-02-09 11:33:23

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Pseudoalteromonadaceae

Genus Pseudoalteromonas

Species Pseudoalteromonas piscicida

Full scientific name Pseudoalteromonas piscicida (ex Bein 1954) Gauthier et al. 1995

Synonyms (2)

"Flavobacterium piscicida"
"Pseudomonas piscicida"

BacDive ID	Other strains from **Pseudoalteromonas piscicida** (3)	Type strain
23203	P. piscicida P2, DSM 6809, NCIB 2037, NCIMB 2037
158094	P. piscicida DSM 9415, NCIMB 848
162996	P. piscicida JCM 20780, ATCC 15802, IAM 12934, NCIMB 854

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
42021	negative	rod-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
42021	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
42021	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42021	positive	growth	25	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
42021	facultative anaerobe
125439	obligate aerobe	90

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
42021	17632 ChEBI	nitrate	-	reduction
42021	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
42021	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
42021	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
42021	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
42021	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
42021	ornithine decarboxylase	-	4.1.1.17
42021	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
42021	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	palmitate biosynthesis	100	22 of 22
66794	biotin biosynthesis	100	4 of 4
66794	kanosamine biosynthesis II	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	Entner Doudoroff pathway	100	10 of 10
66794	enterobactin biosynthesis	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	coenzyme A metabolism	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	butanoate fermentation	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	adipate degradation	100	2 of 2
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	serine metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	methionine metabolism	84.62	22 of 26
66794	proline metabolism	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	tyrosine metabolism	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	purine metabolism	74.47	70 of 94
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	arginine metabolism	66.67	16 of 24
66794	IAA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	lipid metabolism	64.52	20 of 31
66794	pyrimidine metabolism	64.44	29 of 45
66794	lysine metabolism	64.29	27 of 42
66794	citric acid cycle	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	tryptophan metabolism	63.16	24 of 38
66794	urea cycle	61.54	8 of 13
66794	non-pathway related	60.53	23 of 38
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	starch degradation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	ketogluconate metabolism	50	4 of 8
66794	quinate degradation	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ribulose monophosphate pathway	50	1 of 2
66794	histidine metabolism	48.28	14 of 29
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	polyamine pathway	43.48	10 of 23
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	oxidative phosphorylation	40.66	37 of 91
66794	vitamin K metabolism	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	arachidonic acid metabolism	38.89	7 of 18
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	degradation of sugar alcohols	37.5	6 of 16
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	degradation of pentoses	35.71	10 of 28
66794	methane metabolism	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	allantoin degradation	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	carotenoid biosynthesis	31.82	7 of 22
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	metabolism of disaccharids	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	vitamin B12 metabolism	26.47	9 of 34
66794	vitamin E metabolism	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	4-hydroxymandelate degradation	22.22	2 of 9

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
42021	-	+	+	+	-	+	+	+	+	-	+	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Red-tide seawater from South Florida
42021	Environment, Red-tide sea water	South Florida	United States of America	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF297959 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	1221
Soil Samples	33
Animal Samples	253
Plant Samples	2
Total Samples	1509

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42021	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM23831v4 assembly for Pseudoalteromonas piscicida JCM 20779	chromosome	GCA_000238315	1117317.3	2816332321	43662	85.71
66792	ASM38200v1 assembly for Pseudoalteromonas piscicida ATCC 15057	scaffold	GCA_000382005	1279016.3	2519899641	1279016	62.25

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Pseudoalteromonas piscicida gene for 16S ribosomal RNA, partial sequence, strain:IAM 12932	AB090232	1431	43662
67770	Pseudoalteromonas piscicida 16S ribosomal RNA gene, partial sequence	AF297959	1460	43662
124043	Pseudoalteromonas piscicida gene for 16S rRNA, partial sequence, strain: NBRC 103038.	AB681918	1458	43662
124043	Pseudoalteromonas piscicida strain JCM 20779 16S ribosomal RNA gene, partial sequence.	MZ670764	1204	43662
124043	P.piscicida 16S rRNA gene (ATCC 15057)	X82215	1291	43662

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudoalteromonas piscicida JCM 20779
IMG: 2816332321

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.00	no
125439	gram_stain	BacteriaNetⓘ	negative	83.30	no
125439	motility	BacteriaNetⓘ	yes	61.20	no
125439	spore_formation	BacteriaNetⓘ	no	88.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Phylogenomic diversity of Vibrio species and other Gammaproteobacteria isolated from Pacific oysters (Crassostrea gigas) during a summer mortality outbreak.	Worden PJ, Bogema DR, Micallef ML, Go J, Deutscher AT, Labbate M, Green TJ, King WL, Liu M, Seymour JR, Jenkins C.	Microb Genom	10.1099/mgen.0.000883	2022
Enzymology	Mechanisms for Pseudoalteromonas piscicida-Induced Killing of Vibrios and Other Bacterial Pathogens.	Richards GP, Watson MA, Needleman DS, Uknalis J, Boyd EF, Fay JP.	Appl Environ Microbiol	10.1128/aem.00175-17	2017
Genetics	Chitinolytic and Fungicidal Potential of the Marine Bacterial Strains Habituating Pacific Ocean Regions.	Pentekhina I, Nedashkovskaya O, Seitkalieva A, Gorbach V, Slepchenko L, Kirichuk N, Podvolotskaya A, Son O, Tekutyeva L, Balabanova L.	Microorganisms	10.3390/microorganisms11092255	2023
Genetics	Distribution in microbial genomes of genes similar to lodA and goxA which encode a novel family of quinoproteins with amino acid oxidase activity.	Campillo-Brocal JC, Chacon-Verdu MD, Lucas-Elio P, Sanchez-Amat A.	BMC Genomics	10.1186/s12864-015-1455-y	2015
	Biosynthetic mechanism of the yellow pigments in the marine bacterium Pseudoalteromonas sp. strain T1lg65.	Ren Y, Liu R, Zheng Y, Wang H, Meng Q, Zhu T, Yin J, Cao X, Yu Z.	Appl Environ Microbiol	10.1128/aem.01779-23	2024
Metabolism	Culturing marine bacteria from the genus Pseudoalteromonas on a cotton scaffold alters secondary metabolite production.	Timmermans ML, Picott KJ, Ucciferri L, Ross AC.	Microbiologyopen	10.1002/mbo3.724	2019
Transcriptome	Genome Mining, Microbial Interactions, and Molecular Networking Reveals New Dibromoalterochromides from Strains of Pseudoalteromonas of Coiba National Park-Panama.	Atencio LA, Boya P CA, Martin H C, Mejia LC, Dorrestein PC, Gutierrez M.	Mar Drugs	10.3390/md18090456	2020
	Heterologous expression facilitates the discovery and characterization of marine microbial natural products.	Zhao S, Feng R, Gu Y, Han L, Cong X, Liu Y, Liu S, Shen Q, Huo L, Yan F.	Eng Microbiol	10.1016/j.engmic.2023.100137	2024
Genetics	A Pseudoalteromonas Clade with Remarkable Biosynthetic Potential.	Chau R, Pearson LA, Cain J, Kalaitzis JA, Neilan BA.	Appl Environ Microbiol	10.1128/aem.02604-20	2021
Pathogenicity	Hawaiian Bobtail Squid Symbionts Inhibit Marine Bacteria via Production of Specialized Metabolites, Including New Bromoalterochromides BAC-D/D'.	Suria AM, Tan KC, Kerwin AH, Gitzel L, Abini-Agbomson L, Bertenshaw JM, Sewell J, Nyholm SV, Balunas MJ.	mSphere	10.1128/msphere.00166-20	2020
Pathogenicity	Recent Advances in the Heterologous Expression of Biosynthetic Gene Clusters for Marine Natural Products.	Xu Y, Du X, Yu X, Jiang Q, Zheng K, Xu J, Wang P.	Mar Drugs	10.3390/md20060341	2022
Phylogeny	Genome analysis suggests the bacterial family Acetobacteraceae is a source of undiscovered specialized metabolites.	Guzman J, Vilcinskas A.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01676-7	2022
Metabolism	Natural products and morphogenic activity of gamma-Proteobacteria associated with the marine hydroid polyp Hydractinia echinata.	Guo H, Rischer M, Sperfeld M, Weigel C, Menzel KD, Clardy J, Beemelmanns C.	Bioorg Med Chem	10.1016/j.bmc.2017.06.053	2017
Genetics	Generate a bioactive natural product library by mining bacterial cytochrome P450 patterns.	Liu X.	Synth Syst Biotechnol	10.1016/j.synbio.2016.01.007	2016
Genetics	Investigating the Biosynthesis of Natural Products from Marine Proteobacteria: A Survey of Molecules and Strategies.	Timmermans ML, Paudel YP, Ross AC.	Mar Drugs	10.3390/md15080235	2017
	Direct cloning and heterologous expression of natural product biosynthetic gene clusters by transformation-associated recombination.	Zhang JJ, Yamanaka K, Tang X, Moore BS.	Methods Enzymol	10.1016/bs.mie.2019.02.026	2019
Genetics	The Sound of Silence: Activating Silent Biosynthetic Gene Clusters in Marine Microorganisms.	Reen FJ, Romano S, Dobson AD, O'Gara F.	Mar Drugs	10.3390/md13084754	2015
Metabolism	Novel bioactive natural products from bacteria via bioprospecting, genome mining and metabolic engineering.	Sekurova ON, Schneider O, Zotchev SB.	Microb Biotechnol	10.1111/1751-7915.13398	2019
Metabolism	Targeted capture and heterologous expression of the Pseudoalteromonas alterochromide gene cluster in Escherichia coli represents a promising natural product exploratory platform.	Ross AC, Gulland LE, Dorrestein PC, Moore BS	ACS Synth Biol	10.1021/sb500280q	2014
Phylogeny	Pseudomonas laoshanensis sp. nov., isolated from peanut field soil.	Wang MQ, Zhang CS, Yu LN, Yang WQ, Jiao K, Gong KJ, Chi XY, Bi J, Song Y, Yang QL, Zhang JC, Yang GW, Sun J.	Arch Microbiol	10.1007/s00203-020-02067-8	2021
Phylogeny	Roseomonas tokyonensis sp. nov. isolated from a biofilm sample obtained from a cooling tower in Tokyo, Japan.	Furuhata K, Ishizaki N, Edagawa A, Fukuyama M.	Biocontrol Sci	10.4265/bio.18.205	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#42021	Collection of Institut Pasteur ; Curators of the CIP; CIP 103300
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudoalteromonas piscicida (CIP 103300, ATCC 15057, NCIMB 1142)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000238315

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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