Shewanella pealeana (CIP 106450, ATCC 700345, ANG-SQ1)

Name: Shewanella pealeana (CIP 106450, ATCC 700345, ANG-SQ1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 139497

Type strain

Strain Designation ANG-SQ1

Culture col. no. CIP 106450 ATCC 700345 ANG-SQ1

NCBI tax ID(s) 398579 70864

Special Collections CIP

History CIP <- 2000, M.R. Leonardo, Dept. Biological Sci., Univ. of Alabama, Tuscaloosa, USA: strain ANG-SQ1 <- D.P. Moser <- Elena Barbieri

Links

Shewanella pealeana ANG-SQ1 is a facultative anaerobe, Gram-negative, motile bacterium of the family Shewanellaceae.

Gram-negative motile rod-shaped facultative anaerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 43886

ATCC 700345,CIP 106450,NCIMB 13617

@ref 20215

Last LPSN update 2026-02-09 11:33:22

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella pealeana

Full scientific name Shewanella pealeana Leonardo et al. 1999

BacDive ID	Other strains from **Shewanella pealeana** (2)	Type strain
135294	S. pealeana ANG-209, CIP 106448
137720	S. pealeana ANG-SQ2, CIP 106449

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		98
125438	negative		99.5
41753	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
41753	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
41753	CIP Medium 13			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
41753	positive	growth	25
41753	positive	growth	5-30
41753	negative	growth	37
41753	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
41753	facultative anaerobe
125439	obligate aerobe	96.6

Spore formation

@ref	Spore formation	Confidence
125439		92.1
125438		90.72

Halophily

@ref	Salt	Growth	Tested relation	Concentration
41753	NaCl	positive	growth	2-6 %
41753	NaCl		growth	0 %
41753	NaCl		growth	8 %
41753	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
41753	16947 ChEBI	citrate	-	carbon source
41753	4853 ChEBI	esculin	-	hydrolysis
41753	17632 ChEBI	nitrate	+	reduction
41753	16301 ChEBI	nitrite	+	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
41753	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
41753	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
41753	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
41753	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
41753	caseinase	+	3.4.21.50
41753	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
41753	gelatinase	+/-
41753	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
41753	lipase	+
68382	lipase (C 14)	-		from API zym
41753	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
41753	ornithine decarboxylase	-	4.1.1.17
41753	oxidase	+
41753	protease	-
68382	trypsin	-	3.4.21.4	from API zym
41753	tryptophan deaminase	-
41753	tween esterase	+
41753	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	valine metabolism	100	9 of 9
66794	formaldehyde oxidation	100	3 of 3
66794	vitamin K metabolism	100	5 of 5
66794	hydrogen production	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	vitamin B6 metabolism	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	citric acid cycle	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	purine metabolism	84.04	79 of 94
66794	alanine metabolism	82.76	24 of 29
66794	proline metabolism	81.82	9 of 11
66794	pentose phosphate pathway	81.82	9 of 11
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	carnitine metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	methionine metabolism	69.23	18 of 26
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	tryptophan metabolism	68.42	26 of 38
66794	methane metabolism	66.67	2 of 3
66794	nitrate assimilation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	enterobactin biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	glutathione metabolism	64.29	9 of 14
66794	non-pathway related	63.16	24 of 38
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	gallate degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	oxidative phosphorylation	59.34	54 of 91
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	polyamine pathway	56.52	13 of 23
66794	phenol degradation	55	11 of 20
66794	lysine metabolism	54.76	23 of 42
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	glycogen biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	denitrification	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	urea cycle	46.15	6 of 13
66794	sulfate reduction	46.15	6 of 13
66794	degradation of sugar acids	40	10 of 25
66794	coenzyme M biosynthesis	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	vitamin B12 metabolism	38.24	13 of 34
66794	degradation of pentoses	35.71	10 of 28
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	carotenoid biosynthesis	31.82	7 of 22
66794	starch degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phenylpropanoid biosynthesis	23.08	3 of 13

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
41753	-	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
41753	not determinedn.d.	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	+	-	-	-	-	-	-	+	+	-	-	+	+	-	-	+	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
41753		Massachussetts	USA	USA	North America
41753	Accessory Nidamental Glands of the squid Loligo pealei	Massachusetts	United States of America	USA	North America	1996

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
41753	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1828v1 assembly for Shewanella pealeana ATCC 700345	complete	GCA_000018285	398579.7	641228508	398579	99.04

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella pealeana ATCC 700345
NCBI: GCA_000018285

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.10	no
125439	motility	BacteriaNetⓘ	yes	82.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella pealeana ATCC 700345 ATCC 700345
NCBI: GCA_000018285.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	96.17	no
125438	aerobic	aerobicⓘ	no	64.32	yes
125438	spore-forming	spore-formingⓘ	no	90.72	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	yes	86.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	First Report of Pythium aristosporum Causing Corn Stalk Rot in China	Ding JJ, Gu X, Liu W, Chen L, Yang XH, Yao LL, Gao XD, Zhang MM, Li YG.	Plant Dis		2021
Metabolism	Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteria.	Mukherjee S, Barash D, Sengupta S.	PLoS One	10.1371/journal.pone.0184314	2017
Metabolism	Shewanella decolorationis LDS1 Chromate Resistance.	Lemaire ON, Honore FA, Tempel S, Fortier EM, Leimkuhler S, Mejean V, Iobbi-Nivol C.	Appl Environ Microbiol	10.1128/aem.00777-19	2019
	Deciphering and engineering the polyunsaturated fatty acid synthase pathway from eukaryotic microorganisms.	Guo P, Dong L, Wang F, Chen L, Zhang W.	Front Bioeng Biotechnol	10.3389/fbioe.2022.1052785	2022
	Linkage of Marine Bacterial Polyunsaturated Fatty Acid and Long-Chain Hydrocarbon Biosynthesis.	Allemann MN, Shulse CN, Allen EE.	Front Microbiol	10.3389/fmicb.2019.00702	2019
Enzymology	The DEAD-box RNA helicase RhlE2 is a global regulator of Pseudomonas aeruginosa lifestyle and pathogenesis.	Hausmann S, Gonzalez D, Geiser J, Valentini M.	Nucleic Acids Res	10.1093/nar/gkab503	2021
	Deep-Sea Bacterium Shewanella piezotolerans WP3 Has Two Dimethyl Sulfoxide Reductases in Distinct Subcellular Locations.	Xiong L, Jian H, Xiao X.	Appl Environ Microbiol	10.1128/aem.01262-17	2017
Metabolism	Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis.	Bergstrand LH, Cardenas E, Holert J, Van Hamme JD, Mohn WW.	mBio	10.1128/mbio.00166-16	2016
Metabolism	The Pseudomonas aeruginosa Isohexenyl Glutaconyl Coenzyme A Hydratase (AtuE) Is Upregulated in Citronellate-Grown Cells and Belongs to the Crotonase Family.	Poudel N, Pfannstiel J, Simon O, Walter N, Papageorgiou AC, Jendrossek D.	Appl Environ Microbiol	10.1128/aem.01686-15	2015
Genetics	Mining of Microbial Genomes for the Novel Sources of Nitrilases.	Sharma N, Thakur N, Raj T, Savitri, Bhalla TC.	Biomed Res Int	10.1155/2017/7039245	2017
Metabolism	Metagenomes Reveal Global Distribution of Bacterial Steroid Catabolism in Natural, Engineered, and Host Environments.	Holert J, Cardenas E, Bergstrand LH, Zaikova E, Hahn AS, Hallam SJ, Mohn WW.	mBio	10.1128/mbio.02345-17	2018
Metabolism	Identification of Comamonas testosteroni as an androgen degrader in sewage.	Chen YL, Wang CH, Yang FC, Ismail W, Wang PH, Shih CJ, Wu YC, Chiang YR.	Sci Rep	10.1038/srep35386	2016
Genetics	GRSR: a tool for deriving genome rearrangement scenarios from multiple unichromosomal genome sequences.	Wang D, Wang L.	BMC Bioinformatics	10.1186/s12859-018-2268-1	2018
	Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.	Futagami T, Morono Y, Terada T, Kaksonen AH, Inagaki F.	Philos Trans R Soc Lond B Biol Sci	10.1098/rstb.2012.0249	2013
Metabolism	A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella.	Xu T, Yao F, Zhou X, Deng Z, You D.	Nucleic Acids Res	10.1093/nar/gkq610	2010
Metabolism	Mechanistic insights into c-di-GMP-dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa.	Matsuyama BY, Krasteva PV, Baraquet C, Harwood CS, Sondermann H, Navarro MV.	Proc Natl Acad Sci U S A	10.1073/pnas.1523148113	2016
Metabolism	Discovery and characterization of a highly efficient enantioselective mandelonitrile hydrolase from Burkholderia cenocepacia J2315 by phylogeny-based enzymatic substrate specificity prediction.	Wang H, Sun H, Wei D.	BMC Biotechnol	10.1186/1472-6750-13-14	2013
	Role and regulation of fatty acid biosynthesis in the response of Shewanella piezotolerans WP3 to different temperatures and pressures.	Wang F, Xiao X, Ou HY, Gai Y, Wang F.	J Bacteriol	10.1128/jb.00498-08	2009
Metabolism	Identification of 9alpha-hydroxy-17-oxo-1,2,3,4,10,19-hexanorandrostan-5-oic acid in steroid degradation by Comamonas testosteroni TA441 and its conversion to the corresponding 6-en-5-oyl coenzyme A (CoA) involving open reading frame 28 (ORF28)- and ORF30-encoded acyl-CoA dehydrogenases.	Horinouchi M, Hayashi T, Koshino H, Malon M, Hirota H, Kudo T.	J Bacteriol	10.1128/jb.01878-14	2014
	dndDB: a database focused on phosphorothioation of the DNA backbone.	Ou HY, He X, Shao Y, Tai C, Rajakumar K, Deng Z.	PLoS One	10.1371/journal.pone.0005132	2009
Metabolism	SO2426 is a positive regulator of siderophore expression in Shewanella oneidensis MR-1.	Henne KL, Wan XF, Wei W, Thompson DK.	BMC Microbiol	10.1186/1471-2180-11-125	2011
Enzymology	Pantothenate kinase from the thermoacidophilic archaeon Picrophilus torridus.	Takagi M, Tamaki H, Miyamoto Y, Leonardi R, Hanada S, Jackowski S, Chohnan S.	J Bacteriol	10.1128/jb.01021-09	2010
Phylogeny	Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae).	Dikow RB.	BMC Genomics	10.1186/1471-2164-12-237	2011
Metabolism	Interplay of heritage and habitat in the distribution of bacterial signal transduction systems.	Galperin MY, Higdon R, Kolker E.	Mol Biosyst	10.1039/b908047c	2010
	Bioinformatic characterization of the trimeric intracellular cation-specific channel protein family.	Silverio AL, Saier MH.	J Membr Biol	10.1007/s00232-011-9364-8	2011
Metabolism	Insights into the evolution of sialic acid catabolism among bacteria.	Almagro-Moreno S, Boyd EF.	BMC Evol Biol	10.1186/1471-2148-9-118	2009
Metabolism	Shewanella spp. genomic evolution for a cold marine lifestyle and in-situ explosive biodegradation.	Zhao JS, Deng Y, Manno D, Hawari J.	PLoS One	10.1371/journal.pone.0009109	2010
Metabolism	Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships.	Cai L, Tan D, Aibaidula G, Dong XR, Chen JC, Tian WD, Chen GQ.	Microb Cell Fact	10.1186/1475-2859-10-88	2011
Genetics	Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.	Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.	J Mol Evol	10.1007/s00239-011-9441-8	2011
Metabolism	GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease.	Haft DH, Varghese N.	PLoS One	10.1371/journal.pone.0028886	2011
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes.	Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC.	Funct Integr Genomics	10.1007/s10142-009-0142-y	2010
Phylogeny	A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature.	Marakeby H, Badr E, Torkey H, Song Y, Leman S, Monteil CL, Heath LS, Vinatzer BA.	PLoS One	10.1371/journal.pone.0089142	2014
Genetics	Trichomonas vaginalis vast BspA-like gene family: evidence for functional diversity from structural organisation and transcriptomics.	Noel CJ, Diaz N, Sicheritz-Ponten T, Safarikova L, Tachezy J, Tang P, Fiori PL, Hirt RP.	BMC Genomics	10.1186/1471-2164-11-99	2010
	A novel extracellular metallopeptidase domain shared by animal host-associated mutualistic and pathogenic microbes.	Nakjang S, Ndeh DA, Wipat A, Bolam DN, Hirt RP.	PLoS One	10.1371/journal.pone.0030287	2012
	Evolution of the oligopeptide transporter family.	Gomolplitinant KM, Saier MH.	J Membr Biol	10.1007/s00232-011-9347-9	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41753	Collection of Institut Pasteur ; Curators of the CIP; CIP 106450
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella pealeana (CIP 106450, ATCC 700345, ANG-SQ1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

API biotype100

Isolation, sampling and environmental information

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