Name: Acinetobacter vivianii CIP 110483
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139493

Type strain:

Species: Acinetobacter vivianii

Culture col. no.: CIP 110483, NIPH 2168, RUH 65, CCUG 67967, CCM 8642

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2168 <- P. Bouvet 1240

NCBI tax ID(s): 1776742 (species)

SI-ID 410068

CCUG 67967, CIP 110483

Special Collections

Other strains from Acinetobacter vivianii

Section

Acinetobacter vivianii CIP 110483 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies.

coccus-shaped
colony-forming
Gram-negative
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	**Acinetobacter vivianii**
	Full Scientific Name (LPSN)	Acinetobacter vivianii Nemec et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43666]	Gram stain	negative
[Ref.: #41738]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #43666]	Cell shape	coccus-shaped
[Ref.: #41738]	Cell shape	oval-shaped

[Ref.: #41738]	Motility	no

[Ref.: #43666]	Colony size	1.5-2 mm
[Ref.: #43666]	Colony color	Grey-white, slightly opaque
[Ref.: #43666]	Colony shape	circular
[Ref.: #43666]	Incubation period	1 day
[Ref.: #43666]	Cultivation medium used	Tryptic Soy Agar

[Ref.: #63450]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41738]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41738]

Culture medium growth

[Ref.: #41738]

Culture medium composition

expand / minimize

[Ref.: #43666]

Culture medium

BHI

[Ref.: #43666]

Culture medium growth

[Ref.: #43666]

Culture medium

Tryptic Soy Agar

[Ref.: #43666]

Culture medium growth

[Ref.: #41738]

Culture medium

CIP Medium 72

[Ref.: #41738]

Culture medium growth

[Ref.: #41738]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #41738]	growth	30 °C
[Ref.: #43666]	growth	15-37 °C
[Ref.: #63450]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43666]	Oxygen tolerance	obligate aerobe
[Ref.: #63450]	Oxygen tolerance	aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.445

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43666]	2,3-butanediol ChEBI	-	growth
[Ref.: #43666]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #43666]	4-oxopentanoate ChEBI	-	growth
[Ref.: #43666]	adipate ChEBI	+	assimilation
[Ref.: #43666]	azelaate ChEBI	+	assimilation
[Ref.: #43666]	benzoate ChEBI	+	carbon source
[Ref.: #43666]	beta-alanine ChEBI	+	carbon source
[Ref.: #43666]	citraconate ChEBI	-	growth
[Ref.: #43666]	citrate ChEBI	+	carbon source
[Ref.: #43666]	D-gluconate ChEBI	-	growth
[Ref.: #43666]	D-glucose ChEBI	-	growth
[Ref.: #43666]	D-glucose ChEBI	+	builds acid from
[Ref.: #43666]	D-malate ChEBI	+	carbon source
[Ref.: #43666]	D-ribose ChEBI	+	assimilation
[Ref.: #43666]	ethanol ChEBI	-	growth
[Ref.: #43666]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43666]	gelatin ChEBI	-	hydrolysis
[Ref.: #43666]	gentisate ChEBI	+	assimilation
[Ref.: #43666]	glutaric acid ChEBI	+	assimilation
[Ref.: #43666]	histamine ChEBI	-	growth
[Ref.: #43666]	L-arabinose ChEBI	-	growth
[Ref.: #43666]	L-arginine ChEBI	+	carbon source
[Ref.: #43666]	L-glutamate ChEBI	+	carbon source
[Ref.: #43666]	L-histidine ChEBI	+	carbon source
[Ref.: #43666]	L-leucine ChEBI	+	carbon source
[Ref.: #43666]	L-ornithine ChEBI	+	carbon source
[Ref.: #43666]	L-phenylalanine ChEBI	+	carbon source
[Ref.: #43666]	L-tartrate ChEBI	-	growth
[Ref.: #43666]	lactate ChEBI	+	carbon source
[Ref.: #43666]	malonate ChEBI	+	carbon source
[Ref.: #43666]	phenylacetate ChEBI	+	carbon source
[Ref.: #43666]	putrescine ChEBI	+	assimilation
[Ref.: #43666]	trans-aconitate ChEBI	-	assimilation
[Ref.: #43666]	tricarballylate ChEBI	-	assimilation
[Ref.: #43666]	trigonelline ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43666]		catalase	+	1.11.1.6
[Ref.: #43666]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43666]	Sample type/isolated from	A human clinical specimen
[Ref.: #43666]	Geographic location (country and/or sea, region)	University Hospital of Leiden
[Ref.: #43666]	Country	Netherlands
[Ref.: #43666]	Country ISO 3 Code	NLD
[Ref.: #43666]	Continent	Europe

[Ref.: #63450]	Sample type/isolated from	Human
[Ref.: #63450]	Sampling date	1990
[Ref.: #63450]	Geographic location (country and/or sea, region)	Leiden
[Ref.: #63450]	Country	Netherlands
[Ref.: #63450]	Country ISO 3 Code	NLD
[Ref.: #63450]	Continent	Europe

[Ref.: #41738]	Sample type/isolated from	Human
[Ref.: #41738]	Geographic location (country and/or sea, region)	Leiden
[Ref.: #41738]	Country	Netherlands
[Ref.: #41738]	Country ISO 3 Code	NLD
[Ref.: #41738]	Continent	Europe

[Ref.: #41738]	Geographic location (country and/or sea, region)	Leiden
[Ref.: #41738]	Country	Netherlands
[Ref.: #41738]	Country ISO 3 Code	NLD
[Ref.: #41738]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Infection	#Medical environment	#Clinic
#Infection	#Patient	#Specimen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #41738]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43666]	Acinetobacter vivianii strain NIPH 2168 16S ribosomal RNA gene, partial sequence	KT997477		GenBank ENA
[Ref.: #124043]	Acinetobacter vivianii strain NIPH 2168 16S ribosomal RNA gene, partial sequence.	ON754037	1489	GenBank ENA	1776742 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter vivianii CCM 8642	GCA_014635885	contig	GenBank ENA	1776742 tax ID	*
[Ref.: #66792]	Acinetobacter vivianii NIPH 2168	GCA_000369705	scaffold	GenBank ENA	1776742 tax ID	*
[Ref.: #66792]	Acinetobacter sp. NIPH 2168	1217706.3	wgs	PATRIC	1217706 tax ID	*
[Ref.: #66792]	Acinetobacter vivianii strain CCM 8642	1776742.3	wgs	PATRIC	1776742 tax ID	*
[Ref.: #66792]	Acinetobacter sp. NIPH 2168	2565956661	draft	JGI IMG/M	1217706 tax ID	*

[Ref.: #43666]

GC-content

44.68 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acinetobacter sp. NIPH 2168 NIPH 2168 NCBI: GCA_000369705.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.767	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.664	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.445	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	76.685	no

Availability in culture collections External links

[Ref.: #41738]

Culture collection no.

CIP 110483, NIPH 2168, RUH 65, CCUG 67967, CCM 8642

[Ref.: #95983]

SI-ID 410068

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Taxonomy of haemolytic and/or proteolytic strains of the genus Acinetobacter with the proposal of Acinetobacter courvalinii sp. nov. (genomic species 14 sensu Bouvet & Jeanjean), Acinetobacter dispersus sp. nov. (genomic species 17), Acinetobacter modestus sp. nov., Acinetobacter proteolyticus sp. nov. and Acinetobacter vivianii sp. nov.	Nemec A, Radolfova-Krizova L, Maixnerova M, Vrestiakova E, Jezek P, Sedo O	Int J Syst Evol Microbiol	10.1099/ijsem.0.000932	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41738 Collection of Institut Pasteur ; Curators of the CIP; CIP 110483

#43666

Alexandr Nemec, Lenka Radolfova-Krizova, Martina Maixnerova, Eliska Vrestiakova, Petr Jezek, Ondrej Sedo: Taxonomy of haemolytic and/or proteolytic strains of the genus Acinetobacter with the proposal of Acinetobacter courvalinii sp. nov. (genomic species 14 sensu Bouvet & Jeanjean), Acinetobacter dispersus sp. nov. (genomic species 17), Acinetobacter modestus sp. nov., Acinetobacter proteolyticus sp. nov. and Acinetobacter vivianii sp. nov.. IJSEM 66: 1673 - 1685 2016 ( DOI 10.1099/ijsem.0.000932 , PubMed 26822020 )

#63450 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 67967

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#95983

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID410068.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Acinetobacter sp. NIPH 2168 NIPH 2168

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