Name: Ureibacillus thermosphaericus p-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1394

Type strain:

Species: Ureibacillus thermosphaericus

Strain Designation: p-11, HAMBI:1900

Culture col. no.: DSM 10633, HAMBI 1900, CIP 104857, KCTC 13004

Strain history: CIP <- 1996, M. Andersson, Helsinki Univ., Helsinki, Finland: strain HAMBI:1900

NCBI tax ID(s): 51173 (species)

SI-ID 14023

LMG 17959, CCM 4565, CIP 104857, DSM 10633, HAMBI 1900, NCIMB 13459, NCIMB 13819, KACC 10904, KCTC 13004

Other strains from Ureibacillus thermosphaericus

U. thermosphaericus 29A, DSM 12655
U. thermosphaericus CCUG 24808
U. thermosphaericus CCUG 49329
U. thermosphaericus CCUG 64367

Section

Ureibacillus thermosphaericus p-11 is an aerobe, spore-forming, thermophilic bacterium that forms circular colonies and was isolated from landfill air.

colony-forming
Gram-negative
motile
rod-shaped
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Caryophanaceae*
	Genus	*Ureibacillus*
	Species	**Ureibacillus thermosphaericus**
	Full Scientific Name (LPSN)	Ureibacillus thermosphaericus (Andersson et al. 1996) Fortina et al. 2001

Synonym

Bacillus thermosphaericus

Information on morphological and physiological properties Morphology

[Ref.: #23024]	Gram stain	negative
[Ref.: #123516]	Gram stain	positive

[Ref.: #23024]	Cell length	1.0-6.0 µm

[Ref.: #23024]	Cell width	0.5-0.7 µm

[Ref.: #23024]	Cell shape	rod-shaped
[Ref.: #123516]	Cell shape	rod-shaped

[Ref.: #23024]	Motility	yes
[Ref.: #123516]	Motility	yes

[Ref.: #23024]	Colony color	transparent
[Ref.: #23024]	Colony shape	circular
[Ref.: #23024]	Incubation period	1-1.5 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3990]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #3990]

Culture medium growth

[Ref.: #3990]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3990]

Culture medium composition

expand / minimize

[Ref.: #35171]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35171]

Culture medium growth

[Ref.: #35171]

Culture medium composition

expand / minimize

[Ref.: #123516]

Culture medium

CIP Medium 3

[Ref.: #123516]

Culture medium growth

[Ref.: #123516]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3990]		growth	55 °C
[Ref.: #23024]		growth	37.0-60.0 °C
[Ref.: #23024]		growth	37.0 °C
[Ref.: #23024]	no	growth	65.0 °C
[Ref.: #35171]		growth	37 °C
[Ref.: #123516]		growth	30-55 °C
[Ref.: #123516]	no	growth	10 °C
[Ref.: #123516]	no	growth	22 °C

[Ref.: #3990]	Temperature range	thermophilic
[Ref.: #23024]	Temperature range	mesophilic
[Ref.: #23024]	Temperature range	thermophilic
[Ref.: #35171]	Temperature range	mesophilic
[Ref.: #123516]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #23024]			growth	9.0
[Ref.: #123516]			growth	6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23024]	Oxygen tolerance	aerobe
[Ref.: #123516]	Oxygen tolerance	obligate aerobe

[Ref.: #23024]	Spore description	spherical,terminal or subterminal,in swollen sporangia
[Ref.: #23024]	Type of spore	endospore
[Ref.: #23024]	Ability of spore formation	yes
[Ref.: #123516]	Ability of spore formation	yes

	Salt	Tested relation		Salt conc.
[Ref.: #23024]	NaCl		growth	5.0	%
[Ref.: #123516]	NaCl		growth	0-2	%
[Ref.: #123516]	NaCl	no	growth	4	%
[Ref.: #123516]	NaCl	no	growth	6	%
[Ref.: #123516]	NaCl	no	growth	8	%
[Ref.: #123516]	NaCl	no	growth	10	%

[Ref.: #3990]	Murein short key	A11.31
[Ref.: #3990]	Murein types	A4alpha L-Lys-D-Asp

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23024]	casein	-	hydrolysis
[Ref.: #23024]	citrate ChEBI	+	builds acid from
[Ref.: #123516]	citrate ChEBI	-	carbon source
[Ref.: #123516]	esculin ChEBI	-	hydrolysis
[Ref.: #23024]	gelatin ChEBI	-	hydrolysis
[Ref.: #23024]	glucose ChEBI	+	builds acid from
[Ref.: #123516]	hippurate ChEBI	+	hydrolysis
[Ref.: #23024]	L-arabinose ChEBI	+	builds acid from
[Ref.: #23024]	maltose ChEBI	+	builds acid from
[Ref.: #23024]	mannose ChEBI	+	builds acid from
[Ref.: #23024]	nitrate ChEBI	-	reduction
[Ref.: #123516]	nitrate ChEBI	-	reduction
[Ref.: #123516]	nitrate ChEBI	-	respiration
[Ref.: #123516]	nitrite ChEBI	-	reduction
[Ref.: #23024]	rhamnose ChEBI	+	builds acid from
[Ref.: #23024]	ribose ChEBI	+	builds acid from
[Ref.: #23024]	starch ChEBI	-	hydrolysis
[Ref.: #23024]	sucrose ChEBI	+	builds acid from
[Ref.: #23024]	trehalose ChEBI	+	builds acid from
[Ref.: #23024]	urea ChEBI	+	hydrolysis
[Ref.: #23024]	xylose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23024]	acetoin ChEBI	no
[Ref.: #23024]	indole ChEBI	no
[Ref.: #123516]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #23024]	acetoin ChEBI	-
[Ref.: #123516]	acetoin ChEBI	-
[Ref.: #123516]	glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123516]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123516]	amylase	-
[Ref.: #123516]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123516]	caseinase	-	3.4.21.50
[Ref.: #123516]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123516]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #123516]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #123516]	gelatinase	-
[Ref.: #123516]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123516]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123516]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #123516]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123516]	oxidase	+
[Ref.: #123516]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123516]	tween esterase	-
[Ref.: #123516]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123516]	8250	-	-	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3990]	Sample type/isolated from	landfill air
[Ref.: #3990]	Country	Finland
[Ref.: #3990]	Country ISO 3 Code	FIN
[Ref.: #3990]	Continent	Europe

[Ref.: #23024]	Sample type/isolated from	urban air and municipal landfill sites

[Ref.: #123516]	Sample type/isolated from	Environment, Landfill air
[Ref.: #123516]	Geographic location (country and/or sea, region)	Porvoo
[Ref.: #123516]	Country	Finland
[Ref.: #123516]	Country ISO 3 Code	FIN
[Ref.: #123516]	Continent	Europe
[Ref.: #123516]	Isolation date	1987
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Landfill
#Environmental	#Air	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X90640 (>99% sequence identity) for Ureibacillus thermosphaericus subclade from Microbeatlas

Aquatic Samples	2235
Soil Samples	8797
Animal Samples	5636
Plant Samples	2808
Total Samples	19476

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3990]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123516]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Ureibacillus thermosphaericus gene for 16S rRNA, partial sequence	AB101594	1540	ENA	51173 tax ID	*
[Ref.: #20218]	Ureibacillus thermosphaericus isolate Uth41 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723669	539	ENA	51173 tax ID	*
[Ref.: #20218]	Ureibacillus thermosphaericus isolate Uth60 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723670	372	ENA	51173 tax ID	*
[Ref.: #20218]	Ureibacillus thermosphaericus isolate Uth61 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723671	384	ENA	51173 tax ID	*
[Ref.: #20218]	B.thermosphaericus DNA for 16S ribosomal RNA gene	X90640	1488	ENA	51173 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ureibacillus thermosphaericus DSM 10633	GCA_012396605	contig	GenBank	51173 tax ID	*
[Ref.: #66792]	Ureibacillus thermosphaericus DSM 10633	GCA_014202525	scaffold	GenBank	51173 tax ID	*
[Ref.: #66792]	Ureibacillus thermosphaericus strain DSM 10633	51173.7	wgs	PATRIC	51173 tax ID	*
[Ref.: #66792]	Ureibacillus thermosphaericus strain DSM 10633	51173.6	wgs	PATRIC	51173 tax ID	*
[Ref.: #66792]	Ureibacillus thermosphaericus DSM 10633	2861563776	draft	JGI IMG/M	51173 tax ID	*

[Ref.: #3990]	GC-content	37 mol%	high performance liquid chromatography (HPLC)
[Ref.: #23024]	GC-content	35.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ureibacillus thermosphaericus DSM 10633 NCBI: GCA_014202525.1
[Ref.: #69480]	flagellated	yes	86.473	no
[Ref.: #69480]	gram-positive	yes	82.52	no
[Ref.: #69480]	anaerobic	no	96.627	no
[Ref.: #69480]	aerobic	yes	87.959	yes
[Ref.: #69480]	halophile	no	79.512	no
[Ref.: #69480]	spore-forming	yes	96.394	yes
[Ref.: #69480]	glucose-util	yes	67.307	no
[Ref.: #69480]	thermophile	no	92.866	no
[Ref.: #69480]	motile	yes	91.303	yes
[Ref.: #69480]	glucose-ferment	no	91.06	no

Availability in culture collections External links

[Ref.: #3990]

Culture collection no.

DSM 10633, HAMBI 1900, CIP 104857, KCTC 13004

[Ref.: #71045]

SI-ID 14023

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ureibacillus defluvii sp. nov., isolated from a thermophilic microbial fuel cell.	Zhou S, Tang J, Qin D, Lu Q, Yang G	Int J Syst Evol Microbiol	10.1099/ijs.0.056655-0	2014	*
Phylogeny	Ureibacillus suwonensis sp. nov., isolated from cotton waste composts.	Kim BY, Lee SY, Weon HY, Kwon SW, Go SJ, Park YK, Schumann P, Fritze D	Int J Syst Evol Microbiol	10.1099/ijs.0.63703-0	2006	*
Genetics	Phenotypic and genotypic characterization of esterase-producing Ureibacillus thermosphaericus isolated from an aerobic digestor of swine waste.	Gagne A, Chicoine M, Morin A, Houde A	Can J Microbiol	10.1139/w01-096	2001	*
Phylogeny	Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.	Fortina MG, Pukall R, Schumann P, Mora D, Parini C, Manachini PL, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/00207713-51-2-447	2001	*

References

#3990

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10633

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23024

M. G. Fortina,R. Pukall,P. Schumann,D. Mora,C. Parini,P. L. Manachini,E. Stackebrandt: Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.. IJSEM 51: 447 - 455 2001 ( DOI 10.1099/00207713-51-2-447 , PubMed 11321090 )

#35171 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71045

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14023.1 )

#123516 Collection of Institut Pasteur ; Curators of the CIP; CIP 104857
* These data were automatically processed and therefore are not curated

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Ureibacillus thermosphaericus DSM 10633

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