Name: Rhodocyclus purpureus 6770
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13925

Type strain:

Species: Rhodocyclus purpureus

Strain Designation: 6770

Culture col. no.: DSM 168, NCIMB 13339, Pfennig 6770

Strain history: <- N. Pfennig, 6770

NCBI tax ID(s): 1067 (species)

SI-ID 4891

LMG 7759, NCIMB 13339, CECT 5771, DSM 168

Section

Rhodocyclus purpureus 6770 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from slaughterhouse waste lagoon.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Rhodocyclaceae*
	Genus	*Rhodocyclus*
	Species	**Rhodocyclus purpureus**
	Full Scientific Name (LPSN)	Rhodocyclus purpureus Pfennig 1978 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12]

Culture medium

RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)

[Ref.: #12]

Culture medium growth

[Ref.: #12]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12]			growth	25 °C

[Ref.: #12]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #12]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.954

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12]	Sample type/isolated from	slaughterhouse waste lagoon
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Meat
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Rhodocyclus purpureus DSM 168 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequence	AY957979	2083	ENA	1067 tax ID	*
[Ref.: #20218]	Rhodocyclus purpureus strain 6770 16S ribosomal RNA gene, partial sequence	M34132	1478	ENA	1067 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodocyclus purpureus DSM 168	GCA_016653115	scaffold	GenBank	1067 tax ID	*
[Ref.: #66792]	Rhodocyclus purpureus strain DSM 168	1067.13	wgs	PATRIC	1067 tax ID	*

[Ref.: #12]

GC-content

65.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhodocyclus purpureus DSM 168 NCBI: GCA_016653115.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodocyclus purpureus DSM 168 NCBI: GCA_016653115.1
[Ref.: #69480]	flagellated	no	84.333	no
[Ref.: #69480]	gram-positive	no	99.324	no
[Ref.: #69480]	anaerobic	yes	89.451	no
[Ref.: #69480]	aerobic	no	95.23	yes
[Ref.: #69480]	halophile	no	94.013	no
[Ref.: #69480]	spore-forming	no	96.394	no
[Ref.: #69480]	thermophile	no	96.091	yes
[Ref.: #69480]	glucose-util	no	75.535	no
[Ref.: #69480]	motile	no	72.837	no
[Ref.: #69480]	glucose-ferment	no	85.657	no

Availability in culture collections External links

[Ref.: #12]

Culture collection no.

DSM 168, NCIMB 13339, Pfennig 6770

[Ref.: #83099]

SI-ID 4891

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comparative Genome Analysis of the Photosynthetic Betaproteobacteria of the Genus Rhodocyclus: Heterogeneity within Strains Assigned to Rhodocyclus tenuis and Description of Rhodocyclus gracilis sp. nov. as a New Species.	Kyndt JA, Aviles FA, Imhoff JF, Kunzel S, Neulinger SC, Meyer TE	Microorganisms	10.3390/microorganisms10030649	2022	*

References

#12	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 168

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83099

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4891.1 )

* These data were automatically processed and therefore are not curated

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Rhodocyclus purpureus DSM 168

Rhodocyclus purpureus DSM 168

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