Thauera terpenica (CCUG 41527, DSM 12139, 58Eu)

Name: Thauera terpenica (CCUG 41527, DSM 12139, 58Eu)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13914

Type strain

Strain Designation 58Eu

Culture col. no. CCUG 41527 DSM 12139 58Eu CIP 105982

NCBI tax ID(s) 76113

Special Collections DSMZ CCUG CIP

Links

Thauera terpenica 58Eu is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from ditch in a forest.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49240

CIP 105982,CCUG 41527,DSM 12139

@ref 20215

Last LPSN update 2025-12-16 09:50:13

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Thauera

Species Thauera terpenica

Full scientific name Thauera terpenica Foss and Harder 1999

BacDive ID	Other strains from **Thauera terpenica** (1)	Type strain
13915	T. terpenica 21Mol, DSM 12140, CCUG 41528

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
123448	negative	rod-shaped
125438	negative		98.319
125439	negative		99.6
125439			91.2

Colony morphology

4615

Incubation period>14 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4615	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
4615	ANAEROBIC THAUERA MEDIUM (DSMZ Medium 1315)	Medium recipe at MediaDive	Name: ANAEROBIC THAUERA MEDIUM (DSMZ Medium 1315) Composition: NaHCO3 2.52 g/l Na2HPO4 x 2 H2O 1.45 g/l K-acetate 0.98 g/l KNO3 0.85 g/l MgSO4 x 7 H2O 0.5 g/l NH4Cl 0.3 g/l KH2PO4 0.25 g/l NaCl 0.05 g/l MnSO4 0.01 g/l CaCl2 0.01 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l NaOH 0.001 g/l alpha-lipoic acid 0.00025 g/l Riboflavin 0.00025 g/l Thiamine-HCl x 2 H2O 0.00025 g/l Vitamin B12 0.00025 g/l Pantothenic acid 0.00025 g/l p-Aminobenzoic acid 0.00025 g/l CoCl2 x 6 H2O 0.00019 g/l Nicotinic acid 0.000125 g/l Nicotine amide 0.000125 g/l Folic acid 0.0001 g/l MnCl2 x 4 H2O 0.0001 g/l Biotin 0.0001 g/l ZnCl2 7e-05 g/l Pyridoxamine hydrochloride 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Na2WO4 x 2 H2O 8e-06 g/l Na2SeO3 x 5 H2O 6e-06 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
39416	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123448	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4615	positive	growth	30	mesophilic
39416	positive	growth	30	mesophilic
55110	positive	growth	30	mesophilic
123448	positive	growth	15-41
123448	negative	growth	5
123448	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
4615	aerobe
4615	anaerobe
55110	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123448	NaCl	positive	growth	0-2 %
123448	NaCl		growth	4 %
123448	NaCl		growth	6 %
123448	NaCl		growth	8 %
123448	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123448	4853 ChEBI	esculin	-	hydrolysis
123448	17234 ChEBI	glucose	-	degradation
123448	606565 ChEBI	hippurate	+	hydrolysis
123448	15792 ChEBI	malonate	-	assimilation
123448	17632 ChEBI	nitrate	+	builds gas from
123448	17632 ChEBI	nitrate	+	reduction
123448	16301 ChEBI	nitrite	+	builds gas from
123448	16301 ChEBI	nitrite	+	reduction

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
123448	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123448	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123448	15688 ChEBI	acetoin	-
123448	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
123448	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123448	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
123448	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123448	caseinase	-	3.4.21.50
123448	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
123448	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123448	gamma-glutamyltransferase	+	2.3.2.2
123448	gelatinase	-
123448	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123448	lipase	-
68382	lipase (C 14)	-		from API zym
123448	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123448	ornithine decarboxylase	-	4.1.1.17
123448	oxidase	-
123448	phenylalanine ammonia-lyase	-	4.3.1.24
123448	protease	-
68382	trypsin	-	3.4.21.4	from API zym
123448	tryptophan deaminase	-
123448	tween esterase	-
123448	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123448	-	+	+	+	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
4615	ditch in a forest	Germany	DEU	Europe
55110	Ditch in a forest	Germany	DEU	Europe
123448	Environment, Ditch in a forest	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence AJ005817 (>99% sequence identity) for Thauera terpenica subclade from Microbeatlas

Aquatic Samples	2844
Soil Samples	51
Animal Samples	129
Plant Samples	28
Total Samples	3052

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4615	1	Risk group (German classification) According to TRBA 466
123448	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	TT assembly for Thauera terpenica 58Eu	contig	GCA_000443165	1348657.5	2579778713	1348657	47.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Thauera terpenica 16S rRNA gene, type strain 58Eu	AJ005817	1484		1348657

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Thauera terpenica 58Eu
NCBI: GCA_000443165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	91.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Thauera terpenica 58Eu
PATRIC: 1348657.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.32	no
125438	anaerobic	anaerobicⓘ	no	87.43	no
125438	spore-forming	spore-formingⓘ	no	89.69	no
125438	aerobic	aerobicⓘ	yes	65.43	no
125438	thermophilic	thermophileⓘ	no	93.50	no
125438	flagellated	motile2+ⓘ	yes	84.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Microbial degradation of steroid sex hormones: implications for environmental and ecological studies.	Chiang YR, Wei ST, Wang PH, Wu PH, Yu CP.	Microb Biotechnol	10.1111/1751-7915.13504	2020
Phylogeny	Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen-containing monoterpenes (linalool, menthol, and eucalyptol) nitrate.	Foss S, Harder J	Syst Appl Microbiol	10.1016/s0723-2020(98)80046-5	1998

References

#4615	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12139
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39416	; Curators of the CIP;
#55110	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41527
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123448	Collection of Institut Pasteur ; Curators of the CIP; CIP 105982
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Thauera terpenica (CCUG 41527, DSM 12139, 58Eu)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000443165

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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