Name: Psychrobacter glaciei CIP 111025
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 139044

Type strain:

Species: Psychrobacter glaciei

Culture col. no.: CIP 111025, KCTC 42280, CCTCC AB 2014019

Strain history: CIP <- 2016, KCTC <- Yin-Xin Zeng, Shanghai Daojin Industrial and Trade Co., Ltd.

NCBI tax ID(s): 619771 (species)

SI-ID 413122

CIP 111025

Section

Psychrobacter glaciei CIP 111025 is an aerobe, chemoheterotroph, psychrophilic bacterium that forms circular colonies.

coccus-shaped
colony-forming
Gram-negative
aerobe
chemoheterotroph
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter glaciei**
	Full Scientific Name (LPSN)	Psychrobacter glaciei Zeng et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43689]	Gram stain	negative
[Ref.: #41068]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #43689]	Cell length	0.7-1.3 µm

[Ref.: #43689]	Cell width	0.5-0.8 µm

[Ref.: #43689]	Cell shape	coccus-shaped
[Ref.: #41068]	Cell shape	rod-shaped

[Ref.: #43689]	Motility	no
[Ref.: #41068]	Motility	no

[Ref.: #43689]	Colony size	1-2 mm
[Ref.: #43689]	Colony color	Cream-coloured
[Ref.: #43689]	Colony shape	circular
[Ref.: #43689]	Incubation period	2 days
[Ref.: #43689]	Cultivation medium used	Luria Bertani agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41068]

Culture medium

Marine agar (MA)

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Culture medium growth

[Ref.: #41068]

Culture medium composition

expand / minimize

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

[Ref.: #41068]

Culture medium

CIP Medium 13

[Ref.: #41068]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #41068]	growth	20 °C
[Ref.: #43689]	growth	4-34 °C
[Ref.: #43689]	optimum	25-29 °C

[Ref.: #41068]	Temperature range	psychrophilic
[Ref.: #43689]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43689]

Oxygen tolerance

aerobe

[Ref.: #43689]

Nutrition type

chemoheterotroph

[Ref.: #43689]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Salt	Tested relation		Salt conc.
[Ref.: #43689]	NaCl		growth	0-8	%(w/v)
[Ref.: #43689]	NaCl		optimum	2-4	%(w/v)
[Ref.: #43689]	NaCl	no	growth	9	%(w/v)

[Ref.: #43689]

Observation

Surrounded by a thick capsule

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43689]	(S)-lactate ChEBI	-	assimilation
[Ref.: #43689]	2-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43689]	2-oxobutanoate ChEBI	-	assimilation
[Ref.: #43689]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #43689]	2-oxopentanoate ChEBI	+	assimilation
[Ref.: #43689]	3-O-methyl-D-glucose ChEBI	-	assimilation
[Ref.: #43689]	acetate ChEBI	-	assimilation
[Ref.: #43689]	acetoacetate ChEBI	-	assimilation
[Ref.: #43689]	adipate ChEBI	-	assimilation
[Ref.: #43689]	alpha-lactose ChEBI	-	assimilation
[Ref.: #43689]	amygdalin ChEBI	-	builds acid from
[Ref.: #43689]	beta-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43689]	bromosuccinate ChEBI	-	assimilation
[Ref.: #43689]	casein	-	hydrolysis
[Ref.: #43689]	cellobiose ChEBI	-	assimilation
[Ref.: #43689]	citrate ChEBI	-	assimilation
[Ref.: #43689]	D-alanine ChEBI	+	assimilation
[Ref.: #43689]	D-arabitol ChEBI	-	assimilation
[Ref.: #43689]	D-aspartate ChEBI	-	assimilation
[Ref.: #43689]	D-fructose ChEBI	-	assimilation
[Ref.: #43689]	D-fructose ChEBI	-	builds acid from
[Ref.: #43689]	D-fructose 6-phosphate ChEBI	-	assimilation
[Ref.: #43689]	D-fucose ChEBI	-	assimilation
[Ref.: #43689]	D-galactose ChEBI	-	assimilation
[Ref.: #43689]	D-galacturonic acid ChEBI	-	assimilation
[Ref.: #43689]	D-gluconate ChEBI	-	assimilation
[Ref.: #43689]	D-glucose ChEBI	-	assimilation
[Ref.: #43689]	D-glucose ChEBI	-	builds acid from
[Ref.: #43689]	D-glucose 6-phosphate ChEBI	-	assimilation
[Ref.: #43689]	D-glucuronate ChEBI	-	assimilation
[Ref.: #43689]	D-malate ChEBI	-	assimilation
[Ref.: #43689]	D-mannitol ChEBI	-	assimilation
[Ref.: #43689]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43689]	D-mannose ChEBI	-	assimilation
[Ref.: #43689]	D-rhamnose ChEBI	-	assimilation
[Ref.: #43689]	D-saccharate ChEBI	-	assimilation
[Ref.: #43689]	D-serine ChEBI	-	assimilation
[Ref.: #43689]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43689]	decanoate ChEBI	-	assimilation
[Ref.: #43689]	dextrin ChEBI	-	assimilation
[Ref.: #43689]	esculin ChEBI	-	hydrolysis
[Ref.: #43689]	formate ChEBI	-	assimilation
[Ref.: #43689]	galactarate ChEBI	-	assimilation
[Ref.: #43689]	gamma-aminobutyric acid ChEBI	+	assimilation
[Ref.: #43689]	gelatin ChEBI	-	hydrolysis
[Ref.: #43689]	gentiobiose ChEBI	-	assimilation
[Ref.: #43689]	glucuronamide ChEBI	-	assimilation
[Ref.: #43689]	glycerol ChEBI	-	assimilation
[Ref.: #43689]	glycine-proline ChEBI	+	assimilation
[Ref.: #43689]	glycogen ChEBI	+	assimilation
[Ref.: #43689]	glycyl-l-glutamate ChEBI	+	assimilation
[Ref.: #43689]	inosine ChEBI	-	assimilation
[Ref.: #43689]	L-alanine ChEBI	+	assimilation
[Ref.: #43689]	L-arabinose ChEBI	-	assimilation
[Ref.: #43689]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43689]	L-arginine ChEBI	+	assimilation
[Ref.: #43689]	L-aspartate ChEBI	+	assimilation
[Ref.: #43689]	L-fucose ChEBI	-	assimilation
[Ref.: #43689]	L-galactonate ChEBI	-	assimilation
[Ref.: #43689]	L-glutamate ChEBI	+	assimilation
[Ref.: #43689]	L-histidine ChEBI	-	assimilation
[Ref.: #43689]	L-leucine ChEBI	+	assimilation
[Ref.: #43689]	L-malate ChEBI	-	assimilation
[Ref.: #43689]	L-pyroglutamic acid ChEBI	-	assimilation
[Ref.: #43689]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43689]	L-serine ChEBI	+	assimilation
[Ref.: #43689]	maltose ChEBI	-	assimilation
[Ref.: #43689]	maltose ChEBI	-	builds acid from
[Ref.: #43689]	melibiose ChEBI	-	assimilation
[Ref.: #43689]	melibiose ChEBI	-	builds acid from
[Ref.: #43689]	methyl (R)-lactate ChEBI	-	assimilation
[Ref.: #43689]	methyl beta-D-glucopyranoside ChEBI	-	assimilation
[Ref.: #43689]	methyl pyruvate ChEBI	-	assimilation
[Ref.: #43689]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #43689]	monomethyl succinate ChEBI	+	assimilation
[Ref.: #43689]	myo-inositol ChEBI	-	assimilation
[Ref.: #43689]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43689]	N-acetyl-beta-D-mannosamine ChEBI	-	assimilation
[Ref.: #43689]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #43689]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43689]	n-acetylneuraminate ChEBI	-	assimilation
[Ref.: #43689]	nitrate ChEBI	-	reduction
[Ref.: #43689]	pectin ChEBI	-	assimilation
[Ref.: #43689]	phenylacetate ChEBI	-	assimilation
[Ref.: #43689]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43689]	propionate ChEBI	-	assimilation
[Ref.: #43689]	quinate ChEBI	-	assimilation
[Ref.: #43689]	raffinose ChEBI	-	assimilation
[Ref.: #43689]	salicin ChEBI	-	assimilation
[Ref.: #43689]	sodium butyrate ChEBI	-	assimilation
[Ref.: #43689]	sodium citrate ChEBI	-	assimilation
[Ref.: #43689]	sodium lactate ChEBI	-	assimilation
[Ref.: #43689]	sorbitol ChEBI	-	builds acid from
[Ref.: #43689]	stachyose ChEBI	-	assimilation
[Ref.: #43689]	succinate ChEBI	+	assimilation
[Ref.: #43689]	sucrose ChEBI	-	assimilation
[Ref.: #43689]	sucrose ChEBI	-	builds acid from
[Ref.: #43689]	trehalose ChEBI	-	assimilation
[Ref.: #43689]	turanose ChEBI	-	assimilation
[Ref.: #43689]	tween 40 ChEBI	+	assimilation
[Ref.: #43689]	tween 80 ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #43689]	aztreonam ChEBI	yes
[Ref.: #43689]	fusidate ChEBI	yes
[Ref.: #43689]	guanidinium chloride ChEBI	yes
[Ref.: #43689]	lincomycin ChEBI	yes
[Ref.: #43689]	lithium chloride ChEBI	yes
[Ref.: #43689]	minocycline ChEBI	yes
[Ref.: #43689]	nalidixic acid ChEBI	yes
[Ref.: #43689]	niaproof ChEBI	yes
[Ref.: #43689]	potassium tellurite ChEBI	yes
[Ref.: #43689]	rifamycin sv ChEBI	yes
[Ref.: #43689]	tetrazolium blue ChEBI	yes
[Ref.: #43689]	tetrazolium violet ChEBI	yes
[Ref.: #43689]	troleandomycin ChEBI	yes
[Ref.: #43689]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43689]	acetoin ChEBI	yes
[Ref.: #43689]	hydrogen sulfide ChEBI	no
[Ref.: #43689]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43689]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43689]	acid phosphatase	+	3.1.3.2
[Ref.: #43689]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43689]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43689]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43689]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43689]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43689]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43689]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43689]	beta-galactosidase	-	3.2.1.23
[Ref.: #43689]	beta-glucosidase	-	3.2.1.21
[Ref.: #43689]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43689]	catalase	+	1.11.1.6
[Ref.: #43689]	cystine arylamidase	-	3.4.11.3
[Ref.: #43689]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43689]	esterase (C 4)	+
[Ref.: #43689]	esterase Lipase (C 8)	+
[Ref.: #43689]	leucine arylamidase	+	3.4.11.1
[Ref.: #43689]	lipase (C 14)	-
[Ref.: #43689]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43689]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43689]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43689]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43689]	trypsin	-	3.4.21.4
[Ref.: #43689]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43689]	urease	-	3.5.1.5
[Ref.: #43689]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43689]	Sample type/isolated from	An ice core collected from Austre Lovénbreen in Ny-Alesund
[Ref.: #43689]	Geographic location (country and/or sea, region)	Svalbard
[Ref.: #43689]	Country	Norway
[Ref.: #43689]	Country ISO 3 Code	NOR
[Ref.: #43689]	Continent	Europe
[Ref.: #43689]	Geographic location	78.8830°/12.1500°

[Ref.: #41068]	Sample type/isolated from	Environment, Ice core of an Arctic glacier
[Ref.: #41068]	Geographic location (country and/or sea, region)	Austre Lovenbreen in Ny-Alesund, Svalbard, Norway
[Ref.: #41068]	Country	Norway
[Ref.: #41068]	Country ISO 3 Code	NOR
[Ref.: #41068]	Continent	Europe

[Ref.: #41068]	Country	Norway
[Ref.: #41068]	Country ISO 3 Code	NOR
[Ref.: #41068]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Ice
#Environmental	#Terrestrial	#Core sample

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ748508 (>99% sequence identity) for Psychrobacter from Microbeatlas

Aquatic Samples	3187
Soil Samples	925
Animal Samples	3350
Plant Samples	172
Total Samples	7634

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #41068]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43689]	partial 16S rRNA gene sequence	FJ748508		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychrobacter glaciei KCTC 42280	GCA_014652895	scaffold	GenBank	619771 tax ID	*
[Ref.: #66792]	Psychrobacter glaciei strain KCTC 42280	619771.6	wgs	PATRIC	619771 tax ID	*

[Ref.: #43689]

GC-content

46.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychrobacter glaciei strain KCTC 42280 PATRIC: 619771.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychrobacter glaciei KCTC 42280 NCBI: GCA_014652895.1
[Ref.: #69480]	motile	no	89.165	yes
[Ref.: #69480]	flagellated	no	93.742	no
[Ref.: #69480]	gram-positive	no	98.398	no
[Ref.: #69480]	anaerobic	no	98.695	yes
[Ref.: #69480]	aerobic	yes	87.529	yes
[Ref.: #69480]	halophile	yes	82.667	no
[Ref.: #69480]	spore-forming	no	96.981	yes
[Ref.: #69480]	glucose-util	yes	54.146	no
[Ref.: #69480]	thermophile	no	99.659	no
[Ref.: #69480]	glucose-ferment	no	93.032	no

Availability in culture collections External links

[Ref.: #41068]

Culture collection no.

CIP 111025, KCTC 42280, CCTCC AB 2014019

[Ref.: #95629]

SI-ID 413122

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter glaciei sp. nov., isolated from the ice core of an Arctic glacier.	Zeng YX, Yu Y, Liu Y, Li HR	Int J Syst Evol Microbiol	10.1099/ijsem.0.000939	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#41068 Collection of Institut Pasteur ; Curators of the CIP; CIP 111025

#43689

Yin-Xin Zeng, Yong Yu, Yang Liu, Hui-Rong Li: Psychrobacter glaciei sp. nov., isolated from the ice core of an Arctic glacier. IJSEM 66: 1792 - 1798 2016 ( DOI 10.1099/ijsem.0.000939 , PubMed 26827927 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#95629

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID413122.1 )

* These data were automatically processed and therefore are not curated

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Psychrobacter glaciei strain KCTC 42280

Psychrobacter glaciei KCTC 42280

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Change proposal