Dechloromonas hortensis (DSM 15637, ATCC BAA-776, MA-1)

Name: Dechloromonas hortensis (DSM 15637, ATCC BAA-776, MA-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13896

Type strain

Strain Designation MA-1

Culture col. no. DSM 15637 ATCC BAA-776 MA-1

NCBI tax ID(s) 337779

Special Collections DSMZ

History DSMZ <- A. Wolterink, Wageningen Univ.; MA-1

Links

Dechloromonas hortensis MA-1 is an anaerobe bacterium that was isolated from garden soil.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265595

ATCC BAA-776,DSM 15637

@ref 20215

Last LPSN update 2026-05-29 08:28:09

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Azonexaceae

Genus Dechloromonas

Species Dechloromonas hortensis

Full scientific name Dechloromonas hortensis Wolterink et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97
125439	negative	92.676

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6009	DECHLOROMONAS MEDIUM (DSMZ Medium 944a)		Medium recipe at MediaDive	Name: MEDIUM MODIFIED FOR DECHLOROMONAS SPP. (DSMZ Medium 944a) Composition: NaHCO3 3.73 g/l Na-acetate x 3 H2O 2.72 g/l NaClO3 1.06 g/l Na2HPO4 0.53 g/l NH4HCO3 0.44 g/l KH2PO4 0.41 g/l Na2SO4 0.2 g/l CaCl2 0.11 g/l MgCl2 0.1 g/l Yeast extract 0.0999999 g/l HCl 0.0025 g/l NaOH 0.002 g/l FeCl2 x 4 H2O 0.0015 g/l Resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l p-Aminobenzoic acid 5e-05 g/l alpha-lipoic acid 5e-05 g/l Pantothenic acid 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavin 5e-05 g/l Vitamin B12 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l Nicotine amide 2.5e-05 g/l Nicotinic acid 2.5e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l Na2WO4 x 2 H2O 1.6e-05 g/l Na2SeO3 x 5 H2O 1.2e-05 g/l Pyridoxamine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
6009	MEDIUM R2A MODIFIED (DSMZ Medium 830a)		Medium recipe at MediaDive	Name: MEDIUM R2A MODIFIED (DSMZ Medium 830a) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Tween 80 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6009	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6009	anaerobe
6009	microaerophile

Spore formation

@ref	Spore formation	Confidence
125439		99.646

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	+	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
6009	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Garden

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6009	garden soil	Netherlands	NLD	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6009	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM946976v1 assembly for Dechloromonas hortensis MA-1	contig	GCA_009469765	337779.3	8065807343	337779	61.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6009	Dechloromonas hortensis strain MA-1 16S ribosomal RNA gene, partial sequence	AY277621	1511		337779

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM946976v1 assembly for Dechloromonas hortensis MA-1
NCBI: GCA_009469765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	53.94	no
125439	motility	BacteriaNetⓘ	yes	83.23	no
125439	gram_stain	BacteriaNetⓘ	negative	92.68	no
125439	spore_formation	BacteriaNetⓘ	no	99.65	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dechloromonas hortensis strain MA-1
PATRIC: 337779.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	85.61	no
125438	spore-forming	spore-formingⓘ	no	89.77	no
125438	aerobic	aerobicⓘ	no	51.96	yes
125438	thermophilic	thermophileⓘ	no	95.81	yes
125438	flagellated	motile2+ⓘ	yes	84.05	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	(Per)chlorate reduction by an acetogenic bacterium, Sporomusa sp., isolated from an underground gas storage.	Balk M, Mehboob F, van Gelder AH, Rijpstra WI, Damste JS, Stams AJ.	Appl Microbiol Biotechnol	10.1007/s00253-010-2788-8	2010
Phylogeny	Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1.	Wolterink A, Kim S, Muusse M, Kim IS, Roholl PJM, van Ginkel CG, Stams AJM, Kengen SWM	Int J Syst Evol Microbiol	10.1099/ijs.0.63404-0	2005

References

#6009	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15637
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dechloromonas hortensis (DSM 15637, ATCC BAA-776, MA-1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_009469765

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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