Name: Dechloromonas agitata CKB
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13894

Type strain:

Species: Dechloromonas agitata

Strain Designation: CKB

Culture col. no.: DSM 13637, ATCC 700666

Strain history: <- J. D. Coates; CKB

NCBI tax ID(s): 73030 (species)

SI-ID 44066

ATCC 700666, DSM 13637

Section

Dechloromonas agitata CKB is an aerobe, mesophilic bacterium that was isolated from waste from pulp and paper plant.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Azonexaceae*
	Genus	*Dechloromonas*
	Species	**Dechloromonas agitata**
	Full Scientific Name (LPSN)	Dechloromonas agitata Achenbach et al. 2001

Synonym

"Dechlorimonas agitatus"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5029]

Culture medium

MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908)

[Ref.: #5029]

Culture medium growth

[Ref.: #5029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5029]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5029]			growth	30 °C

[Ref.: #5029]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5029]	Oxygen tolerance	aerobe
[Ref.: #5029]	Oxygen tolerance	anaerobe

[Ref.: #5029]

Name of produced compound

chlorite dismutase

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5029]	Sample type/isolated from	waste from pulp and paper plant
[Ref.: #5029]	Geographic location (country and/or sea, region)	Pennsylvania, York
[Ref.: #5029]	Country	USA
[Ref.: #5029]	Country ISO 3 Code	USA
[Ref.: #5029]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Plant (Factory)
#Engineered	#Waste	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF047462 (>99% sequence identity) for Dechloromonas from Microbeatlas

Aquatic Samples	324
Soil Samples	40
Animal Samples	182
Plant Samples	106
Total Samples	652

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5029]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5029]	Dechlorimonas agitatus 16S ribosomal RNA gene, complete sequence	AF047462	1506	ENA	73030 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dechloromonas agitata CKB	2506520023	draft	JGI IMG/M	73030 tax ID	*
[Ref.: #66792]	Dechloromonas agitata DSM 13637	GCA_028864255	contig	GenBank	73030 tax ID	*

Availability in culture collections External links

[Ref.: #5029]

Culture collection no.

DSM 13637, ATCC 700666

[Ref.: #83069]

SI-ID 44066

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1.	Wolterink A, Kim S, Muusse M, Kim IS, Roholl PJM, van Ginkel CG, Stams AJM, Kengen SWM	Int J Syst Evol Microbiol	10.1099/ijs.0.63404-0	2005	*

References

#5029

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13637

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83069

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44066.1 )

* These data were automatically processed and therefore are not curated

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