Azospira oryzae (DSM 21223, CCUG 45016, LMG 9096)

Name: Azospira oryzae (DSM 21223, CCUG 45016, LMG 9096)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13892

Type strain

Strain Designation 6a3

Culture col. no. DSM 21223 CCUG 45016 LMG 9096 6a3

NCBI tax ID(s) 146939

Special Collections DSMZ CCUG

Links

Azospira oryzae 6a3 is a mesophilic prokaryote that was isolated from surface sterilized roots of kallar grass.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 92126

LMG 9096,CCUG 45016,DSM 21223

@ref 20215

Last LPSN update 2025-12-16 09:50:12

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Rhodocyclaceae

Genus Azospira

Species Azospira oryzae

Full scientific name Azospira oryzae Reinhold-Hurek and Hurek 2000

Synonyms (3)

Dechloromonas suillum
"Dechlorisoma suillus"
Dechlorosoma suillum

BacDive ID	Other strains from **Azospira oryzae** (6)	Type strain
13890	A. oryzae GR-1, DSM 11199
13891	A. oryzae PS, DSM 13638, ATCC BAA-33
142080	A. oryzae CCUG 10488, CCUG 34302, ATCC 51563, LMG 6115
142602	A. oryzae CCUG 13232, CCUG 34304, ATCC 51564, LMG 6116
156720	A. oryzae CCUG 64447
157126	A. oryzae CCUG 69608 B

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15522	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15522	positive	growth	37	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
15522	surface sterilized roots of kallar grass	Punjab	Pakistan	PAK	Asia
56594	Kallar grass,surface-sterilized roots	Punjab	Pakistan	PAK	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF011347 (>99% sequence identity) for Azospira oryzae subclade from Microbeatlas

Aquatic Samples	15144
Soil Samples	5057
Animal Samples	9661
Plant Samples	2139
Total Samples	32001

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15522	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM421722v1 assembly for Azospira oryzae DSM 21223	scaffold	GCA_004217225	146939.10	2795386137	146939	74.46
66792	Azospira oryzae 6a3	complete			2547132512	146939	59.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15522	Azospira oryzae 16S ribosomal RNA gene, partial sequence	AF011347	1436		146939

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Azospira oryzae DSM 21223
NCBI: GCA_004217225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	83.70	no
125439	motility	BacteriaNetⓘ	yes	67.30	no
125439	gram_stain	BacteriaNetⓘ	negative	77.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	84.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Azospira oryzae DSM 21223
NCBI: GCA_004217225.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	76.97	no
125438	aerobic	aerobicⓘ	yes	52.33	no
125438	spore-forming	spore-formingⓘ	no	89.68	no
125438	thermophilic	thermophileⓘ	no	96.95	yes
125438	flagellated	motile2+ⓘ	yes	79.62	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics Provides Insights into the Taxonomy of Azoarcus and Reveals Separate Origins of Nif Genes in the Proposed Azoarcus and Aromatoleum Genera.	Raittz RT, Reginatto De Pierri C, Maluk M, Bueno Batista M, Carmona M, Junghare M, Faoro H, Cruz LM, Battistoni F, Souza E, Pedrosa FO, Chen WM, Poole PS, Dixon RA, James EK.	Genes (Basel)	10.3390/genes12010071	2021

References

#15522	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21223
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#56594	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45016
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Azospira oryzae (DSM 21223, CCUG 45016, LMG 9096)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004217225

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media