Dechlorosoma suillum (DSM 13638, ATCC BAA-33, PS)

Name: Dechlorosoma suillum (DSM 13638, ATCC BAA-33, PS)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13891

Type strain

Strain Designation PS

Culture col. no. DSM 13638 ATCC BAA-33 PS

NCBI tax ID(s) 146939

Special Collections DSMZ

Links

Dechlorosoma suillum PS is an aerobe, mesophilic prokaryote that was isolated from swine waste primary lagoons.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49498

DSM 13638,ATCC BAA-33

@ref 20215

Last LPSN update 2025-12-16 09:50:12

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Rhodocyclaceae

Genus Dechlorosoma

Species Dechlorosoma suillum

Full scientific name Dechlorosoma suillum corrig. Achenbach et al. 2001

Synonyms (3)

Azospira oryzae
Dechloromonas suillum
"Dechlorisoma suillus"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98
125439	negative	90.4

Multimedia

@ref:	5030
multimedia content:	DSM_13638.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_13638.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5030	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
5030	MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908)		Medium recipe at MediaDive	Name: MEDIUM FOR CHLORATE RESPIRERS (DSMZ Medium 908) Composition: NaHCO3 2.43665 g/l Na-acetate 1.32554 g/l NaClO3 0.974659 g/l NaH2PO4 0.584795 g/l NH4Cl 0.243665 g/l KCl 0.0974659 g/l MgSO4 0.0292398 g/l CaCl2 x 2 H2O 0.00974659 g/l HCl 0.00243665 g/l FeCl2 x 4 H2O 0.00146199 g/l alpha-lipoic acid 0.000243665 g/l p-Aminobenzoic acid 0.000243665 g/l Na2MoO4 0.000243665 g/l Thiamine-HCl x 2 H2O 0.000243665 g/l Na2WO4 x 2 H2O 0.000243665 g/l Vitamin B12 0.000243665 g/l Riboflavin 0.000243665 g/l Pantothenic acid 0.000243665 g/l CoCl2 x 6 H2O 0.000185185 g/l Nicotine amide 0.000121832 g/l Nicotinic acid 0.000121832 g/l Folic acid 9.74659e-05 g/l Biotin 9.74659e-05 g/l MnCl2 x 4 H2O 9.74659e-05 g/l ZnCl2 6.82261e-05 g/l Pyridoxamine hydrochloride 4.87329e-05 g/l Na2MoO4 x 2 H2O 3.50877e-05 g/l NiCl2 x 6 H2O 2.33918e-05 g/l H3BO3 5.84795e-06 g/l CuCl2 x 2 H2O 1.94932e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5030	positive	growth	30	mesophilic
5030	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
5030	aerobe
5030	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
5030	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Waste
#Host	#Mammals

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5030	swine waste primary lagoons	Illinois	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AF170348 (>99% sequence identity) for Azospira oryzae subclade from Microbeatlas

Aquatic Samples	15144
Soil Samples	5057
Animal Samples	9661
Plant Samples	2139
Total Samples	32001

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5030	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM23666v1 assembly for Azospira oryzae PS	complete	GCA_000236665	640081.3	2508501046	640081	97.79

Genome browser: GCA_000236665

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5030	Dechlorosoma suillum 16S ribosomal RNA gene, complete sequence	AF170348	1532		640081

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Azospira oryzae PS
IMG: 2508501046

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.40	no
125439	motility	BacteriaNetⓘ	yes	69.20	no
125439	gram_stain	BacteriaNetⓘ	negative	90.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	83.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Azospira oryzae PS PS
NCBI: GCA_000236665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	78.20	no
125438	aerobic	aerobicⓘ	yes	52.72	no
125438	spore-forming	spore-formingⓘ	no	89.32	no
125438	thermophilic	thermophileⓘ	no	96.45	yes
125438	flagellated	motile2+ⓘ	yes	80.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Quantitative rRNA-targeted solution-based hybridization assay using peptide nucleic acid molecular beacons.	Li X, Morgenroth E, Raskin L.	Appl Environ Microbiol	10.1128/aem.01002-08	2008
Phylogeny	Dechlorosoma suillum Achenbach et al. 2001 is a later subjective synonym of Azospira oryzae Reinhold-Hurek and Hurek 2000.	Tan Z, Reinhold-Hurek B	Int J Syst Evol Microbiol	10.1099/ijs.0.02606-0	2003
Phylogeny	Dechloromonas hortensis sp. nov. and strain ASK-1, two novel (per)chlorate-reducing bacteria, and taxonomic description of strain GR-1.	Wolterink A, Kim S, Muusse M, Kim IS, Roholl PJM, van Ginkel CG, Stams AJM, Kengen SWM	Int J Syst Evol Microbiol	10.1099/ijs.0.63404-0	2005

References

#5030	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13638
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dechlorosoma suillum (DSM 13638, ATCC BAA-33, PS)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000236665

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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