Azonexus fungiphilus (DSM 23841, CCUG 46758, LMG 19178)

Name: Azonexus fungiphilus (DSM 23841, CCUG 46758, LMG 19178)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13888

Type strain

Strain Designation BS5-8

Culture col. no. DSM 23841 CCUG 46758 LMG 19178 BS5-8

NCBI tax ID(s) 146940

Special Collections DSMZ CCUG

Links

Azonexus fungiphilus BS5-8 is an aerobe, mesophilic prokaryote that was isolated from rice soil,.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13093

LMG 19178,CCUG 46758,KCTC 12150,KCTC 12198,DSM 23841

@ref 20215

Last LPSN update 2025-12-16 09:50:12

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Azonexaceae

Genus Azonexus

Species Azonexus fungiphilus

Full scientific name Azonexus fungiphilus Reinhold-Hurek and Hurek 2000

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7
125439		95.4
125438	negative	97

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17396	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
17396	positive	growth	28	mesophilic
57329	positive	growth	30-37	mesophilic

Physiology and metabolism

Oxygen tolerance

57329

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.6
125438		91.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17396	rice soil,	Punjab	Pakistan	PAK	Asia
57329	Soil,rice,black sclerotium of a basidiomycete	Punjab	Pakistan	PAK	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF011350 (>99% sequence identity) for Azonexus fungiphilus subclade from Microbeatlas

Aquatic Samples	509
Soil Samples	20
Animal Samples	114
Plant Samples	18
Total Samples	661

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17396	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM363496v1 assembly for Azonexus fungiphilus DSM 23841	scaffold	GCA_003634965	146940.3	2770939617	146940	73.96

Genome browser: GCA_003634965

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17396	Azonexus fungiphilus 16S ribosomal RNA gene, partial sequence	AF011350	1475		146940

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Azonexus fungiphilus DSM 23841
NCBI: GCA_003634965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	95.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	70.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Azonexus fungiphilus DSM 23841
NCBI: GCA_003634965.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	89.14	yes
125438	aerobic	aerobicⓘ	yes	63.80	yes
125438	spore-forming	spore-formingⓘ	no	91.80	no
125438	thermophilic	thermophileⓘ	no	95.90	no
125438	flagellated	motile2+ⓘ	yes	84.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Azonexus hydrophilus sp. nov., a nifH gene-harbouring bacterium isolated from freshwater.	Chou JH, Jiang SR, Cho JC, Song J, Lin MC, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65434-0	2008
Phylogeny	Azonexus caeni sp. nov., a denitrifying bacterium isolated from sludge of a wastewater treatment plant.	Quan ZX, Im WT, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64019-0	2006

References

#17396	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23841
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#57329	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46758
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Azonexus fungiphilus (DSM 23841, CCUG 46758, LMG 19178)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003634965

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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