Aromatoleum toluolicum (DSM 9506, T, DSM 19020)

Name: Aromatoleum toluolicum (DSM 9506, T, DSM 19020)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13881

Type strain

Strain Designation T

Culture col. no. DSM 9506 T DSM 19020

NCBI tax ID(s) 90060 29544

Special Collections DSMZ

Links

Aromatoleum toluolicum T is an aerobe, mesophilic prokaryote that was isolated from effluent from laboratory aquifer column.

aerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 48638

LMG 30751,DSM 9506,DSM 19020

@ref 20215

Last LPSN update 2025-12-16 09:50:12

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Rhodocyclales

Family Zoogloeaceae

Genus Aromatoleum

Species Aromatoleum toluolicum

Full scientific name Aromatoleum toluolicum Rabus et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.7
125438	negative	98.9

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3618	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
3618	MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461)	Medium recipe at MediaDive	Name: MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461) Composition: Na2HPO4 x 2 H2O 1.44135 g/l MgSO4 x 7 H2O 0.497018 g/l NH4Cl 0.298211 g/l KH2PO4 0.248509 g/l NaCl 0.0497018 g/l MnSO4 0.00994036 g/l CaCl2 0.00994036 g/l HCl 0.00248509 g/l FeCl2 x 4 H2O 0.00149105 g/l Thiamine-HCl x 2 H2O 0.000248509 g/l p-Aminobenzoic acid 0.000248509 g/l Vitamin B12 0.000248509 g/l Pantothenic acid 0.000248509 g/l Riboflavin 0.000248509 g/l alpha-lipoic acid 0.000248509 g/l CoCl2 x 6 H2O 0.000188867 g/l Nicotine amide 0.000124254 g/l Nicotinic acid 0.000124254 g/l Folic acid 9.94036e-05 g/l Biotin 9.94036e-05 g/l MnCl2 x 4 H2O 9.94036e-05 g/l ZnCl2 6.95825e-05 g/l Pyridoxamine hydrochloride 4.97018e-05 g/l Na2MoO4 x 2 H2O 3.57853e-05 g/l NiCl2 x 6 H2O 2.38569e-05 g/l H3BO3 5.96421e-06 g/l CuCl2 x 2 H2O 1.98807e-06 g/l Distilled water
3618	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3618	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
3618	aerobe
3618	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.5

Compound production

@ref	Compound
3618	succinyl-CoA:(R)-benzylsuccinate CoA-transferase
3618	benzylsuccinate synthase

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Laboratory
#Engineered	#Waste

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
3618	effluent from laboratory aquifer column	Switzerland	CHE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1291100v2 assembly for Aromatoleum toluolicum T	contig	GCA_012911005	90060.3	3001516296	90060	17.21

Genome browser: GCA_012911005

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aromatoleum toluolicum T
NCBI: GCA_012911005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.50	no
125439	motility	BacteriaNetⓘ	yes	79.60	no
125439	gram_stain	BacteriaNetⓘ	negative	93.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aromatoleum toluolicum T
NCBI: GCA_012911005.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.90	no
125438	anaerobic	anaerobicⓘ	no	83.44	no
125438	aerobic	aerobicⓘ	yes	57.55	no
125438	spore-forming	spore-formingⓘ	no	86.80	no
125438	thermophilic	thermophileⓘ	no	95.92	yes
125438	flagellated	motile2+ⓘ	yes	80.89	no

Literature

Title	Authors	Journal	DOI	Year
Enhancing tellurite and selenite bioconversions by overexpressing a methyltransferase from Aromatoleum sp. CIB.	Alonso-Fernandes E, Fernandez-Llamosas H, Cano I, Serrano-Pelejero C, Castro L, Diaz E, Carmona M.	Microb Biotechnol	10.1111/1751-7915.14162	2023
Isophthalate:coenzyme A ligase initiates anaerobic degradation of xenobiotic isophthalate.	Junghare M, Frey J, Naji KM, Spiteller D, Vaaje-Kolstad G, Schink B.	BMC Microbiol	10.1186/s12866-022-02630-x	2022
Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019

References

#3618	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9506
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aromatoleum toluolicum (DSM 9506, T, DSM 19020)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_012911005

Genome-based predictions

Predictions

Literature

Literature

References

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