Name: Aromatoleum toluolicum T
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13881

Type strain:

Species: Aromatoleum toluolicum

Strain Designation: T

Culture col. no.: DSM 9506, DSM 19020, LMG 30751

Strain history: <- J. Zeyer, EAWAG, Swiss Fed. Inst. Aquatic Sci. & Technol., Switzerland; T

NCBI tax ID(s): 29544 (species)

SI-ID 48638

DSM 9506, DSM 19020

Section

Aromatoleum toluolicum T is an aerobe, mesophilic bacterium that was isolated from effluent from laboratory aquifer column.

aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Rhodocyclales*
	Family	*Zoogloeaceae*
	Genus	*Aromatoleum*
	Species	**Aromatoleum toluolicum**
	Full Scientific Name (LPSN)	Aromatoleum toluolicum Rabus et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3618]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #3618]

Culture medium growth

[Ref.: #3618]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3618]

Culture medium composition

expand / minimize

[Ref.: #3618]

Culture medium

MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461)

[Ref.: #3618]

Culture medium growth

[Ref.: #3618]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3618]

Culture medium composition

expand / minimize

[Ref.: #3618]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #3618]

Culture medium growth

[Ref.: #3618]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3618]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3618]			growth	28 °C

[Ref.: #3618]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3618]	Oxygen tolerance	aerobe
[Ref.: #3618]	Oxygen tolerance	anaerobe

[Ref.: #3618]	Name of produced compound	succinyl-CoA:(R)-benzylsuccinate CoA-transferase
[Ref.: #3618]	Name of produced compound	benzylsuccinate synthase

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3618]	Sample type/isolated from	effluent from laboratory aquifer column
[Ref.: #3618]	Country	Switzerland
[Ref.: #3618]	Country ISO 3 Code	CHE
[Ref.: #3618]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	-
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aromatoleum toluolicum T	GCA_012911005	contig	GenBank	90060 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aromatoleum toluolicum T NCBI: GCA_012911005.1
[Ref.: #69480]	motile	yes	89.512	no
[Ref.: #69480]	flagellated	yes	80.097	no
[Ref.: #69480]	gram-positive	no	99.097	no
[Ref.: #69480]	anaerobic	no	93.907	no
[Ref.: #69480]	aerobic	no	55.25	no
[Ref.: #69480]	halophile	no	89.786	no
[Ref.: #69480]	spore-forming	no	95.321	no
[Ref.: #69480]	glucose-util	yes	54.084	no
[Ref.: #69480]	thermophile	no	98.357	yes
[Ref.: #69480]	glucose-ferment	no	89.549	no
[Ref.: #69480]	motile	yes	89.512	no
[Ref.: #69480]	flagellated	yes	80.097	no
[Ref.: #69480]	gram-positive	no	99.097	no
[Ref.: #69480]	anaerobic	no	93.907	no
[Ref.: #69480]	aerobic	no	55.25	no
[Ref.: #69480]	halophile	no	89.786	no
[Ref.: #69480]	spore-forming	no	95.321	no
[Ref.: #69480]	glucose-util	yes	54.084	no
[Ref.: #69480]	thermophile	no	98.357	yes
[Ref.: #69480]	glucose-ferment	no	89.549	no

Availability in culture collections External links

[Ref.: #3618]

Culture collection no.

DSM 9506, DSM 19020, LMG 30751

[Ref.: #83056]

SI-ID 48638

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov. and Aromatoleum diolicum sp. nov.	Rabus R, Wohlbrand L, Thies D, Meyer M, Reinhold-Hurek B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003244	2019	*

References

#3618

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9506

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83056

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48638.1 )

* These data were automatically processed and therefore are not curated

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